KEGG   Gadus morhua (Atlantic cod): 115535383
Entry
115535383         CDS       T10832                                 
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
gmh  Gadus morhua (Atlantic cod)
Pathway
gmh03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:gmh00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115535383 (snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:gmh03041]
    115535383 (snrnp40)
Spliceosome [BR:gmh03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    115535383 (snrnp40)
 Complex C
   U5 SnRNP specific factors
    115535383 (snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 EIF3I Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_EIPR1 Beta-prop_SPT8 ANAPC4_WD40 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_DCAF4 Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_WDR75_2nd Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_IFT140_2nd Beta-prop_VPS8 WD40_like PROPPIN
Other DBs
NCBI-GeneID: 115535383
NCBI-ProteinID: XP_030202398
Ensembl: ENSGMOG00000010466
LinkDB
Position
22:21338656..21345811
AA seq 347 aa
MIEQKKRAADMAVVATGVKRPRTELIAAAQSQQLVAMGPPRSSSLQAPIMLMSGHEGEVY
CCKFHPNGATLASSGFDRLILMWNVYGDCDNFATLKGHSGAVMELHYNTDGSTLFSASTD
KTVGVWDSETGERLKRLKGHSSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKGAVHTF
QNTYQVLAVTFNDTSDQILSGGIDNDIKVWDLRQNKLIYSMHGHSDSITGLSLSSEGSYL
LSNSMDNTVRIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCAWSTDGSKIAAGSADRFVY
VWDTTSRRILYKLPGHAGSVNEVAFHPEEPIVLSGASDKRLYMGEIQ
NT seq 1044 nt   +upstreamnt  +downstreamnt
atgatcgagcagaaaaagagagcggccgacatggctgtggtcgccaccggtgtgaagcgg
ccccgcacggagctgatcgctgcggctcagtcgcaacaactcgtggccatgggtccaccg
cggagttccagcctccaggctcccatcatgttgatgtctggtcatgaaggagaggtctac
tgttgcaagtttcaccccaacggagccacactggcctcctcgggatttgacagactcata
ttgatgtggaacgtttatggagactgcgataactttgctactcttaaggggcacagtggt
gcagtgatggagctgcattacaacacagatggcagcacgctgttctcagccagcacggac
aagacggtgggcgtgtgggacagtgagacaggggagaggctgaaacgcctgaagggccac
agctccttcgtcaactcctgctacccagcccgccgcggcccccagctggtctgcaccggc
agtgacgacggcaccgtcaagttatgggacatacgcaaaaagggggcggtccacaccttc
cagaacacctaccaggtgctggcggtcaccttcaacgacaccagcgatcagatcctgtct
ggaggcatcgacaacgacatcaaggtgtgggacctcaggcagaacaagctcatctacagc
atgcacggtcacagtgactccatcaccggcctcagcctcagttcagagggctcgtacctg
ctctccaactccatggataacacggtgcgcatctgggacgtcaggcccttcgctcccaag
gagaggtgtgtgaagatcttccaggggaatgtccacaactttgagaagaacctgctgagg
tgcgcctggtctacagacggcagcaagatagcagccggctcggccgacaggtttgtgtac
gtctgggacaccacctcccgcaggatcctgtacaagctgcccggacacgctggctccgtc
aacgaggtggccttccacccggaggaacctatagtgctttctggtgccagcgataagcgg
ctatacatgggagaaattcaatag

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