Gadus morhua (Atlantic cod): 115535595
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Entry
115535595 CDS
T10832
Symbol
vps50
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
gmh Gadus morhua (Atlantic cod)
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gmh04131
]
115535595 (vps50)
Membrane trafficking [BR:
gmh04131
]
Protein recycling
Others
EARP complex
115535595 (vps50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
115535595
NCBI-ProteinID:
XP_030202800
Ensembl:
ENSGMOG00000008792
LinkDB
All DBs
Position
22:complement(16429289..16536125)
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AA seq
991 aa
AA seq
DB search
MQKIKSLMARQGLKSPQESMSDLSPVENLRIPSKEELRELREQPIDPQAEQEMIESIAEV
YYSCDSFDMVKHELEKLPPELDLQELEDHRDTLKKQQAAVSKKVADLILEKQPAYVKELE
RVTALQTNLQLAAVICTNARRQLGVSKEGFTEASLGLLANQRKRQLLTGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKTCKHFDVSHYTKVQLAYTLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNA
DTKFQKMQYKDLCTHITPDSYIPCLTDLCKALWEVMLSYHSTMQWHEELDNKEGPATQDG
GASAGADESVVDRSYVKKKLEHGLTRIWQDVQLKVKAYILGTDMSNFKYDDFIVVLDVIS
RLMQVGEEFCGSRSEVLQESIKRQSVNYFRNYHRARLEELRMFLENETWELCPVKSNFSI
AQLHEFKFMGQCHSPSLSPSRQAGTGAAGGDLSLFQQFLLEGNPFEMHIENKEEETEDVL
ASNGYESDELEKNVFQDYDSDSDVPEELKQDYVDEQTGDAPLKSVSRETMRSHKKSDYSL
NKGTAPILTNTTLNVIRLLGKYMQMMNILKPIAFDVIHCVSQLFDYYLYAVYTFFGRNDM
PAPSPSLLSQSGRETVGARVVGPACLYESSGLGLISSRLRTTLNRIQENLIDMESSGESA
GVHGQVEDRKEKVPTPHLSQLVVLTKSGTLYGLAQRVVATESLVFLAEQFDSLQAHLDSM
MPAVKKPFLQQFYSQTVSTASELRKPIYWIVAAKAIDYEQMLLMMSGVKWDIREIMSQHN
VYVDILLKEFEQFNAQLGDVSRQVRIPLAVSNVLWEHCIRLANRTLVEGYANVKKCSNEG
RALMQLDFQQFLMKLERLTDLRPIPDKEFVETYIKAYYLTENDMEQFIKNHREYSMKQLA
NLVNVCLGSHINKKARQKLLSAIDDIDRPKR
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagatcaagtctcttatggcccgacagggtctgaaaagtcctcaagaaagcatg
tcagacctcagtcctgtggaaaacctgaggattccaagcaaggaggagctgcgtgagctg
agggagcagcccatcgacccccaggcggagcaggagatgatcgagagcatcgccgaggtg
tactactcctgtgactccttcgacatggtgaagcacgagttggagaaacttccccctgag
ctggacctgcaggagttggaggatcacagagatacgctgaagaaacaacaggccgccgtg
tccaaaaaagttgccgatctcatcctggagaaacaaccggcatacgtcaaggagctggag
agagtgactgcgcttcaaaccaatttacagctagcagctgtcatctgcaccaatgcaagg
aggcagctgggcgtgtccaaggaaggattcaccgaggccagcctgggcctgttggccaac
cagaggaagagacagctgctcacaggactgctcaagtcgctcaggaccattaagaccctg
caaagaacagatgtacgactcagtgaaatgcttgaggaggaagactacccaggggccatc
cagctctgtctggagtgtcagaaggccgccagcaccttcaagcactacagctgcatcagt
gaattgaactccaaactacaagacactctcgaacaaatagaggaacagctggacgtggct
ctgtccaagacctgcaagcactttgatgtatctcattacaccaaggtgcagctggcttac
acgctcctgggaaagacacagaccgccatggaccagctgcacatgcacttcacgcaggcc
atccacaacacggtgttccaggtggtgctgggatacgtggagctctgtgccggcaacgcc
gacaccaagtttcagaaaatgcagtacaaggacctctgcacgcatatcaccccggacagc
tacatcccctgcctgactgacctgtgcaaggcattgtgggaagtgatgctcagctaccac
tctaccatgcagtggcacgaagagcttgacaacaaggagggccccgccacccaagacggg
ggggcgtcggccggcgcggacgagtcggtggtggaccgcagctacgtgaagaagaagctg
gagcacggcctcacacgcatctggcaggatgtccagttgaaggtgaaggcctacatcctg
ggaaccgacatgtccaactttaagtatgacgacttcatcgtggtgctggatgtcatcagc
aggttgatgcaggtgggggaggagttctgtggcagcaggtcggaggtgctgcaggagtcc
atcaaacgacagagcgttaactacttcaggaactaccacagggcacgactggaggagctg
aggatgtttttggagaacgagacatgggagctctgtccggtcaagtctaacttcagcatc
gcccagctccacgagttcaagttcatgggccagtgccactcgccgtcgctctcccccagc
cgacaggccggcactggggccgcggggggggatctctccctcttccagcagttcctcctg
gaggggaacccttttgagatgcacatcgaaaacaaggaggaggaaacggaggacgtgctg
gcatcgaatgggtatgagtcggacgagctggagaagaatgtgttccaggactatgacagc
gacagcgacgtcccggaagaactcaagcaggactacgtggacgagcagacgggcgacgcc
cctctcaagagtgtgtcccgggagaccatgagaagccacaagaagtcagactacagcctc
aacaagggtaccgcgccaatcctcaccaacaccactctaaacgtcatccggctgcttggc
aagtacatgcagatgatgaacatcctgaagcccatcgccttcgacgtcatccactgtgtg
tcgcagctgtttgactactacctgtacgccgtctacaccttcttcggacgcaacgacatg
cccgcccctagcccgtctctgctctcccagagcggcagagagacggtcggggctagggtg
gtgggacctgcctgcctgtacgagtcgtcaggtctgggtctcatcagcagcagattgaga
actaccctcaaccgcatccaggagaacctcatagacatggagtcctcaggggagagcgcc
ggggtccacgggcaggtggaggaccgaaaggagaaggtgcccaccccccacctcagccaa
ctggtggtcctcaccaaaagtgggaccctgtatggcttggctcagagggtcgtagcaaca
gagtctctggtgttcttggcagagcagtttgactctctgcaggcccatctggacagcatg
atgccggctgtgaagaagcctttcctgcagcagttctactcccagacggtgtccacggcc
agcgagctgcggaagcccatctactggatcgtggcggccaaggccatcgactacgagcag
atgctgctcatgatgtccggggtcaagtgggacatcagggagataatgtcccagcacaac
gtgtatgtggacatcctgctgaaggagtttgagcagttcaacgcacagctgggtgatgtg
tccagacaggtgcgcatccccctggccgtctccaacgtcctttgggaacactgcatccga
ttggccaatcgcactctggtggagggctacgctaacgtgaagaagtgcagcaacgagggg
cgtgcgctgatgcagctggacttccagcagttcctcatgaagctggagcggctgacggac
ctgcggcccatccccgacaaggagtttgtggagacctacatcaaggcctactatctgacg
gagaacgacatggagcagttcatcaagaaccacagggaatactccatgaagcagcttgct
aacctggtcaacgtgtgtctgggctcgcacatcaacaagaaggctcgtcagaagctgctg
tcggccatcgacgacatcgaccggccaaagagatag
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