Gadus morhua (Atlantic cod): 115535668
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Entry
115535668 CDS
T10832
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115535668
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmh03019
]
115535668
03036 Chromosome and associated proteins [BR:
gmh03036
]
115535668
Enzymes [BR:
gmh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115535668
Messenger RNA biogenesis [BR:
gmh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
115535668
mRNA degradation factors
5'-3' decay
Decapping complex
115535668
Chromosome and associated proteins [BR:
gmh03036
]
Eukaryotic type
Gene silencing
piRNA pathway
115535668
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
115535668
NCBI-ProteinID:
XP_030202931
Ensembl:
ENSGMOG00000003561
LinkDB
All DBs
Position
22:complement(6401036..6415162)
Genome browser
AA seq
493 aa
AA seq
DB search
MATAKTESTAAAVLMGLNKQNGQLRGQPKPATLLSGPQVQGKAVALQQKTGGPPQEGGGG
GGGGIKFGDDWKTSLHLPPKDTRVRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSP
IQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDYIQAMVMVPTRELALQVS
QICIQISKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQ
MMVMDEADKLLSQDFVVLIEDIISFLAKSRQILLYSATFPISVQKFMNKHLQKPYEINLM
EELTLKGITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSC
FYIHAKMMQEYRNRVFHDFRNGLCRNLVSTDLFTRGIDIQAVNVVINFDFPKNAETYLHR
IGRSGRFGHLGLAINLITSEDRYNLKSIEDQLMTDIKPIPSCIDKSLYVAEFHSSNPDCE
VEEVDERSGRQQD
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgcgaaaacggagagtacagcagccgccgtcctcatgggactcaacaaacag
aacgggcagctccgaggacagcccaaacccgccacgctcctctcaggaccccaggttcag
gggaaggccgtggccctgcagcagaagacgggagggcccccgcaggaaggcggcggcggc
ggcggcggcggcatcaagttcggagacgactggaaaacaagcctccatcttcctcccaaa
gacacccgtgtcagaacatcagatgtgacctcaaccaagggcaacgagtttgaggactac
tgcctgaaacgagagctcctgatgggcatcttcgagatgggctgggagaaaccgtctcct
atccaggaggagagcattcccatagcgctgtctggccgagacattctggcccgcgccaag
aacgggacggggaaaagtggggcgtacctcatccccctcctggagagaatagacctgaag
aaggactacatacaggccatggtgatggtacccaccagagagctcgccctgcaggtcagc
cagatctgcatccagatcagcaagcacatgggcggggtcaaggtcatggccaccaccgga
ggcaccaacctgagggacgacatcatgcgtctggacgagaccgtgcatgtggtgatcgcc
acacccggcaggatcctggatctcatcaagaagggcgtggccaaggtggaccgggtccag
atgatggtgatggacgaggcggacaagctgctgtctcaggactttgtggtgctcatcgag
gacatcatcagcttcctggccaagagccggcagatcctgctctactctgccaccttcccc
atcagcgtgcagaagttcatgaacaagcacctccagaagccctacgagatcaacctgatg
gaggagctcaccctgaagggcatcacacagtactacgcctacgtcacggagaggcaaaaa
gtccactgtctcaacactctcttctccaggctccagatcaaccagtcgatcatcttctgc
aactccacccagagggtggagctcctggccaagaagatcacccagctgggctactcctgc
ttctacatccacgccaagatgatgcaggaatacagaaaccgcgtgttccatgacttcaga
aatggactgtgcagaaatctggtcagcaccgacctgttcaccagaggcattgacattcag
gctgtcaatgtggtgatcaactttgacttccccaagaacgcagagacgtaccttcatcgt
atcggacgatcaggtagattcggccacctgggcctggccatcaacctgatcacctcagag
gaccgctacaacctgaagtccatcgaggaccagctgatgacggacatcaagcccatcccc
tcttgcatagacaagagcctgtacgtggccgagttccactcctccaaccccgactgcgag
gtggaggaggtggacgagagatccggccggcaacaagactga
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