Gadus morhua (Atlantic cod): 115535829
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Entry
115535829 CDS
T10832
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115535829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmh03019
]
115535829
Messenger RNA biogenesis [BR:
gmh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115535829
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
115535829
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Cluap1
Motif
Other DBs
NCBI-GeneID:
115535829
NCBI-ProteinID:
XP_030203215
Ensembl:
ENSGMOG00000027580
UniProt:
A0A8C5FTL5
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Position
22:139613..172918
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AA seq
890 aa
AA seq
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MADKRKLQGEIDRCLKKVAEGVEQFEDIWLKVRGGRVELHNAANANQKEKYEADLKKEIK
KLQRLRDQIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQK
VDPAQKEKEEVGTWLTNTIDTLNMQVDQYESEVESLSVQTRKKKGEKEPQQERIEELKQF
VEKHRYHIRMLETILRMLDNHSIQVDSIRKIKDDVEYYLDSSQDPDFEENEFLYDDLDLD
EIPTALLATSPPGTTLEDEILQHSSSTPTSTTSSSPTPPSPATCTTENSEDDKKRGRSTD
SEVSQSPVKNGNPSSSFSSSSSSSSSSSSASGPASSSGPASSSLVSLAGAGGGNTLLGSM
GGLLSSSLASSYSNATQQPPHPSTQQHHLPKNPSSASTSSGLHHPGSSAASASPPNAITQ
PQASPASMPTNSLGLSLGMGLGKGSGPGRGDASSPVSSGGMAGLISGSTPAPYAQAAAAS
GPVGGGLLGGVSSAPGAAGGGCSITVGGPTSTTGGLLGTSPGGGGGLLGLGSGPLGGQGG
SSMGSLAPGGGVGVIGSGGGGAVGSAVGGVTGSSLLSNRPPSRQKQNGGYSAVVSDSTQD
SVLTSASQSQSSQPSCLTSTANQLKDSGPSLLGSLTLASCSASPLCYTEAHSSGSSPLLN
GPLSYPQASDIIKPQESMSSLKTMAHQAALSSGIETDMSSLHLNTDVFPSTTAPSGPPSG
PQTSLSEVSIPPSLGVCPLGPVALSKEQLYQQAMEEAAWTHMPHPSDSERIRQYLMRNPC
PTLPFHHQVPPPHSDSVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYM
MWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atggccgataaacgaaaactccaaggtgaaatagatcgatgtttgaaaaaggtagcggag
ggggtggagcagtttgaagacatctggctgaaggtacgcggaggtcgcgtcgagctgcac
aacgccgcaaacgccaaccagaaggagaaatatgaagcggacctcaagaaggagatcaag
aaactacagcgactgcgggaccagatcaagacgtgggtcgcatccaacgagatcaaagac
aaacggcagctcgtcgagaaccgcaaactcatagaaacgcaaatggagcgcttcaaggtg
gtggagcgtgagaccaagacgaaggcctactccaaggaaggcctggggctcgcccagaag
gtggaccccgcccagaaggagaaggaggaggtcggcacctggctgacgaacaccatcgac
acgctgaacatgcaggtggaccagtacgagagcgaggtggagtcgctctccgtccagaca
cgcaagaagaagggcgagaaggagccgcagcaggagcgcatcgaggagctgaagcagttt
gtggagaagcaccgctaccacatccgcatgctggaaaccatcctgcgcatgctggacaac
cactccatccaggtggactccatccggaagatcaaggacgacgtggagtactacctggac
tcctcccaggacccggactttgaggagaacgagttcctgtacgacgacctggacctggac
gagatccccaccgccctgctggccacctccccccccggcaccaccctggaggacgagatc
ctgcagcactcgagcagcacgccgacctccaccacctcctcctcccccacgccgccctcc
ccggccacctgcaccacggagaactctgaggacgacaagaagagaggccgctctacagac
agcgaggtcagccagtctcctgtgaagaacggcaacccgtcctcctcgttctcctcgtcc
tcctcgtcctcctcgtcctcgtcctccgcctcgggtcccgcctcctcctcgggccccgcc
tcctcctcgctggtctccctggcgggggccggggggggcaacaccctgctgggcagcatg
ggcggccttctgtccagcagcctggccagcagctacagcaacgccacgcagcagccgccc
cacccctccacgcagcagcaccacctgcccaagaacccctcctccgcctccacctcctcc
ggcctccaccaccccggctcctccgccgcctccgcctctccccccaatgccatcacccag
ccccaggcctcgccggcctccatgcccaccaacagcctggggctcagtttgggcatgggc
ctggggaagggctccgggccgggccgcggcgacgccagcagccccgtgtcgtcgggcggc
atggcgggcctcatctcgggctccacgccggcgccctacgcccaggccgccgccgcctcg
ggcccggtgggcgggggcctgctgggcggggtctcctcggccccgggggcggcggggggc
ggctgcagcatcacggtggggggccccacctccaccacgggggggctgctggggacctcg
ccgggcgggggcggcgggctgctgggcctggggtccggcccactgggggggcagggcggc
tcctccatggggagcctggcccccgggggcggcgtgggggtcatcggcagcggagggggc
ggagctgtgggcagcgcagtgggcggagtcacaggcagctctctgctctccaatcgaccg
cccagccggcagaaacagaacggaggttacagtgccgtggtgtcagacagcacgcaggac
tctgtcctcaccagtgcaagccaatcacagagcagccagccttcctgtttgacctccaca
gccaatcagcttaaggacagcggccccagcctcttggggtccctcaccctggcctcctgc
tctgcgtctcctctctgctacacggaggcgcactcgtctggcagcagccccctcctcaac
gggcccctgtcctacccccaggcctctgacatcatcaagccccaggagtcgatgagcagt
ctgaagaccatggcccatcaggcggccctcagctctgggatcgagacggacatgtcctcc
ctccacctcaacacggacgtgttccccagcacgacggccccctcagggcccccctccggg
ccccagacctccctgtcggaggtgagcatcccgccctcgctgggcgtgtgccccctgggg
cccgtggcgctgtccaaggagcagctctaccagcaggccatggaggaggccgcctggacg
cacatgccccacccctccgactccgagaggatcaggcagtacctgatgaggaacccgtgc
cccacgctgcccttccaccaccaggttccgccgccgcactcggactcggtggagttctac
cagcggctctccaccgagacgctcttcttcatcttctactacctggagggaacgaaggct
cagtatttggcagcgaaggccttgaagaagcagtcgtggaggttccacaccaagtacatg
atgtggttccagcgccacgaggaaccaaagaccatcacggacgagtttgaacaggggacc
tacatctacttcgactacgagaagtggggccagcggaagaaggagggcttcaccttcgag
taccgctacctggaggaccgcgacctccagtga
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