Gadus morhua (Atlantic cod): 115536034
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Entry
115536034 CDS
T10832
Symbol
col22a1
Name
(RefSeq) collagen alpha-1(XXII) chain isoform X1
KO
K16630
collagen type XXII alpha
Organism
gmh Gadus morhua (Atlantic cod)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
115536034
NCBI-ProteinID:
XP_030203548
LinkDB
All DBs
Position
22:20026928..20072333
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AA seq
1623 aa
AA seq
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MGLRLGLRFSLVMVILALTLSGEGVEAQSRAGCKNVHYDLAFILDTSSSVGKENFEKIRQ
WVANLVESFDVGEERTRVAVVRYSDRPTLEFNLARHKSLEEVKRAAANIRYIGGNTMTGD
AISYTTQNVFVERHGARPRAKGIQRVAILVTDGRSQDYVLEPSKEAAAAGIRVFAVGIGE
ALKVELEEIAAEPKNAHVFHVTDFNAIDKLRGRLRRRLCENVLCPNMKVQPDRFKPGSTS
YALDAVPGFDLMEYFNVRDILGTREDEGQSSYVRLGTMPIVQKTEDVFPQGLPDEYAFVT
TFKFRKTSRREDWYLWQIFDKYGIPQVSIRLDGENRAVEYNAVGLTKDAVRAVFKNDEVD
NLFDRNWHKIALSVDAKSVTLYLDCKLIQTLPIGDREDIDIQGKTVIGKRLYDSVPIDFD
LQRMMIYCDSKHAELETCCDLPTGPCPKKVVTEAPPVQIPTPAPTVAEQKRGPQVNCSCP
PGEEGPAGEPGVPGTKGVKGDSGLKGAMGPSGVKGQRGETGKVISVKGDRGEKGDSGSIG
LTGRDGPKGVKGTGGIPGIDGLQGDKGESGEGGAPGVAGLPGSVGLKGIQGDSGVPGVPG
FNGVSGENGFKGEQGTPGTKGEVGLSGFAGKPGFPGKDGLRGMVGAPGAGGTKGDKGERG
PAGLPGDVVQKDGLKGEEGLAGPPGAPGAIGPAGPPGPPGNQGYPGEPGEFGQRGKKGES
GLPGVDGLPGAAGQAGIPGPAGLQGHTGPPGLPGEIGFSGKHGESGKAGLPGKDGLDGLP
GNDGGPGPRGERGTDGLSGKEGLKGQDGPPGPRGPPGERGEAGLRGPAGEEGPGGIRGVP
GERGNDGGLGPKGAKGDKGDVGGRGLPGIPGNVAEVIQEPGEPGKPGEKGEKGDQGKQGE
TGLRGLPGEQGFRGLPGAQGTKGDGGIPGEVGRVGDAGPPGPAGIQGGRGLPGNAGIPGT
MGPPGPIGERGEKGEGGKEGKTGAAGPRGDPGLSGPPGPTGKGKDGPDGEPGQPGVQGPP
GPQGQTGPSGPQGGPGLRGVPGEGKVGVQGPSGLRGEPGAAGLRGQAGTAGAQGPAGHNG
VPGRPGEKGDAGVPGKAADLSELDLKNVCSDCPAGPPGTPGLPGVLGEKGHNGLPGKSGQ
DGYPGQVGPTGPAGPPGADGTKGIKGDRGPAGTNGDKGEKGHPGPPGHQGAAGLPGSAGN
DGPPGPSGPPGAPGEKGKEGLKGIQGPPGLPGMMGQSGKMGKDGRSGEPGEPGKQGDPGP
AGNTGLRGMPGFKGHRGEPGPSGSKGEDGKSGLPGREGKPGTDGATGPPGGDGLMGQRGE
SGKPGEPGPSGKPGAAGTPGLMGNKGEPGNPGLPGFSGPKGPAGPHGPAGPEGKQGMPGR
VGDRGIKGERGDPGNKGDKGHNGESGIPGNPGTPGRKGHTGMMGMSGPQGDIGPTGPQGS
IGNPGTPGPRGESVSVEQMRRLIQEELSKQLDSKLAYLISQIQPAHVKTTAGRPGTPGTP
GKDGSQGRPGPPGEQGMPGQNGGEGIRGPHGPKGERGTRGEKGENGVGERGEKGPAGPIG
PAGLPGYGKDGSPGQVGTQGEPGNPGPHGQTGPPGPTGQCDPSQCAYYASMASRPHTKNT
KGN
NT seq
4872 nt
NT seq
+upstream
nt +downstream
nt
atggggttacgactgggactgaggttcagcctggtcatggtgatcctggccttgactctg
tccggagagggagttgaagcccagagcagggcagggtgtaagaacgtccactacgacctg
gccttcatcctggacacctcgtccagcgtgggcaaggagaactttgagaagatcaggcag
tgggtggccaacctggtggagtccttcgacgtgggcgaggagaggacgcgtgtggccgtg
gtgcgctacagcgaccggcccacgctggagttcaacctggccagacacaagagcctggag
gaggtgaagcgcgccgccgccaacatccgctacatcggcgggaacaccatgacgggcgac
gccatcagctacaccacccagaacgtcttcgtggagcgtcacggcgcccggccccgcgcc
aagggcatccagagggtggccatcttggtcaccgacggcaggagccaggattatgtcctg
gagccctccaaggaggcggcggcggcggggatcagggtgttcgccgtgggcatcggggag
gccctcaaagtggagctggaggagatcgccgccgaacccaaaaacgcgcacgtcttccac
gtgacggacttcaatgccatcgacaagctccgcggtcgactgaggagaaggctctgtgaa
aacgtgctgtgtcccaatatgaaggtgcaaccggatcgcttcaagcccggcagcacgagt
tacgctctggatgccgtcccaggctttgatctcatggagtacttcaacgtgagagacatt
ctggggaccagagaagatgagggtcagagctcatacgtacgtcttgggacaatgccaatt
gtacaaaaaacagaagacgtttttcctcagggactgccagacgagtatgcctttgtgaca
acgtttaaattcaggaaaacctcccgacgtgaagattggtacctctggcaaatcttcgac
aaatatggcatcccacaggtgtccatccgcctggacggggagaaccgggcagtggagtac
aacgcggtgggcctcaccaaggacgccgtgagggccgtgttcaagaacgacgaggtggac
aacctcttcgaccgcaactggcataagatcgccctcagtgtggacgccaagtccgtcacc
ctgtacctggactgcaagctgatccagacgctgcccatcggcgaccgggaggacatcgac
atccaggggaagacggtgatcggcaagaggctgtacgacagcgtgcccatcgactttgac
ctccagaggatgatgatttattgcgattccaagcatgcagagctggaaacatgttgcgac
ctacctaccgggccatgcccgaagaaggttgttacagaggcccccccggtacagatccca
accccggcccccacggtggcggagcagaaaagaggccctcaggtcaactgttcctgtcct
cctggggaagaggggccagcaggggaacctggcgttccgggcaccaagggtgtaaaggga
gactctggtctgaagggcgccatgggaccgagcggcgtcaaaggacagagaggagaaact
ggcaaagtaatctctgtcaagggtgacagaggtgagaagggcgactccggaagcatcggg
ttaacaggtcgcgatggacccaaaggagtgaagggaactggtgggattccagggatcgat
ggcttgcagggcgacaaaggagaaagtggtgaaggcggagcccctggtgtagcaggactg
cccgggtcagtggggctaaagggaatccaaggggattcaggagtacctggcgtgcctgga
ttcaatggtgtctctggagaaaacggattcaaaggagaacagggaactcccgggaccaag
ggagaagtcggtttgtctggatttgcgggaaaacctgggtttcctgggaaagacggcttg
cgaggcatggtgggcgctcctggtgcaggtgggaccaagggagataagggagagaggggg
cccgccggattacctggggatgtggtccaaaaggatggtttgaagggcgaagagggattg
gccggacccccgggggccccaggagccatcggaccagcagggccacctgggcctcctggt
aatcaaggatatccaggtgaacctggagaattcggccagcggggaaagaaaggcgaaagt
ggattaccaggagtcgatggcctcccgggagcagcaggtcaggcgggcatccctggccca
gcaggattacagggacacaccggaccccctggtctccctggcgagatcggattctccggc
aaacatggcgagtccggcaaggctggtcttcccgggaaagacggtctggatggccttcca
ggaaatgatggcggcccgggacccaggggcgagcgaggaaccgacggcttatctggcaaa
gaggggctcaagggccaagacggacccccggggccgagaggacccccaggggagagagga
gaggctggtttgaggggaccggccggtgaggagggccccggtgggatcaggggagttccg
ggagaacgaggaaacgatggaggacttggacctaaaggagcaaagggcgacaagggggac
gtcggtggccgggggcttccaggcataccgggcaacgtggccgaggttatccaggagcca
ggtgaaccggggaaaccgggagagaaaggagagaagggtgatcaagggaaacaaggagaa
acgggtctgagaggtttacctggagagcagggcttcaggggacttcccggggcacaggga
accaaaggagacggcggcattcccggggaggttggaagggtcggagacgctggcccacct
ggaccagccggtatccaaggtggacgtggactaccaggaaatgcgggcatcccgggaacc
atggggcctcctggtcccatcggagagagaggagagaagggcgaggggggtaaagaagga
aaaacgggagctgcaggcccccgcggagaccccggtctcagcgggcccccaggacccaca
ggaaagggcaaagacggcccagatggggagcccgggcagcccggcgtccaaggacctcca
gggccgcagggccagaccggaccctcaggaccccagggtgggcccggactgaggggcgtc
cccggggaagggaaggtcggagtccagggaccctcaggactcaggggcgagcccggtgcc
gcggggctgaggggccaagcaggcacagccggtgcccaggggcccgcaggacacaacggt
gtacctggaagacctggagagaaaggggatgccggtgtacctgggaaggctgcagatctc
tctgagctggatcttaagaacgtgtgctcagactgtcccgccggcccacccggaaccccc
ggcctgcccggcgttctgggagagaagggacacaacggcctccccgggaagagcggtcaa
gatggctacccaggccaggtggggccgacggggcccgcggggcccccaggggccgacggg
accaagggaatcaaaggagaccgtggacccgccgggaccaacggagacaagggggagaag
ggccaccccgggccacccggacaccagggggccgctggccttccaggcagtgctggtaac
gacgggccgcctggtccatcgggccccccgggggccccgggagaaaagggtaaagaggga
ctcaagggtatccagggtccacctggccttcctgggatgatgggccagtccggcaaaatg
gggaaagatggccgatccggtgaacccggcgagcctggcaagcagggcgatcctggacca
gcgggcaacactggactcagaggaatgcccggctttaaaggccaccgaggcgaacccggg
ccctcgggatccaagggggaagatggaaaatcgggattgcctggacgggaggggaaacct
ggaacagatggagccacgggccccccaggtggagacggactgatggggcagagaggggaa
tcgggcaaaccaggtgaaccggggccctcaggaaaaccaggagccgccggtactccgggt
cttatgggaaacaagggcgagcccggcaaccctggattaccagggtttagtggccccaag
ggccccgcgggtccacacggtccggccggccccgaggggaaacaggggatgccaggcaga
gtgggggaccgcggcatcaagggggaaaggggtgacccgggaaacaagggcgacaaaggc
cacaacggggagtccggcattcccggcaaccccggaaccccgggaaggaagggccacacc
gggatgatgggcatgtcagggccacagggggacatcggcccaacggggccccagggatcg
atcggtaaccctggaacgccggggcccaggggagagtcggtgtcggtggagcagatgcgg
cgactgatccaggaagagctcagtaaacagttggactccaaactggcctacctgatctct
cagatccagccggcccacgtgaagaccacggcggggcggcccgggaccccggggacgccg
gggaaggacggctcccagggccgccccggccccccgggggagcaggggatgcccggtcag
aacggaggggagggcatccgaggacctcacggccccaaaggtgaacgaggaaccagagga
gagaagggagagaatggcgtcggggagcgaggagagaaaggaccagccggcccaataggc
ccagccggtctgcccggctacggtaaagacggaagcccgggacaagtgggcacccaggga
gagccagggaaccccggcccccacgggcagaccgggcccccgggacccaccggccagtgc
gaccccagccagtgcgcttattacgctagcatggcgtcaagaccccacaccaagaacacc
aaggggaattaa
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integrated database retrieval system
