Gadus morhua (Atlantic cod): 115536084
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Entry
115536084 CDS
T10832
Symbol
col28a1
Name
(RefSeq) collagen alpha-1(XXVIII) chain
KO
K23619
collagen type XXVIII alpha
Organism
gmh Gadus morhua (Atlantic cod)
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
gmh01002
]
115536084 (col28a1)
Peptidases and inhibitors [BR:
gmh01002
]
Peptidase inhibitors
Family I2: Kunitz - BPTI family
115536084 (col28a1)
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Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Kunitz_BPTI
DUF1194
Motif
Other DBs
NCBI-GeneID:
115536084
NCBI-ProteinID:
XP_030203595
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Position
22:18815819..18838063
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AA seq
1162 aa
AA seq
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MRWVLELACLMLLLQLSAGAQGRRRKGQRDDNQVILNEGKVLVCPVELMFLVDSSETAKL
LLFQKQKEFVLRFSERLSRLQAPGWRVRLRMAAAQYSSSVVVEHNFRDWQDLDVFRGRVA
AMAYIGHGTYSAYALGNATRLFGRETSPGSLRVALLMSDGVDHPRSPSALAAAADAKNHN
IRVFAIRPSGQPRDAVERLRSVASAPPHQHVFSLADPQMEERLYKELTNVIHLGCPPPKS
CLCDKGERGHPGSPGKAGERGSDGAPGPQGPHGESGINGRPGMDGIQGRSGVRGEKGECG
AVGSPGLQAEKGLQGLAGARGPRGEQGSRGGPGDQGPEGPTGPKGETGPAGAPGQQGDVG
VGFPGAKGDKGNQGRAGPSGPLGQGEPGPPGPPGPQGLHGAHGAPGEGLPGSKGDRGYEG
PKGNRGPPGVGLRGDKGSAGEPGLPGLLGFPGVGIQGEKGDQGPVGPSGPRGPSGHGAVG
PKGDQGFPGEHGPQGERGTGEPGSKGEPGPEGTAGLPGIPGEDGAAGPKGESGLPGQRGT
EGAAGKGIPGEKGDRGDRGIRGLPGGTGPVGPAGAKGEPGSLGMTGVSGPPGRGLPGPKG
ESGPVGPSGPVGEAGVGITGPKGERGPRGPVGPTGVAGEGQPGPQGLPGLPGQQGDVGPE
GNGLPGTKGNRGPAGVPGPSGPPGVGLVGQKGSAGTVGPTGEPGLPGEGIQGPKGEQGFQ
GITGPRGPPGHGVPGEKGGRGSPGERGRKGDLGGFGEPGTPGPTGKPGEKGLRGLNREEV
IRIIREICGCGLKCRESPLELVFVIDSSESVGPDHFEAVKDFVNVLVDRVSVSREASRVG
VVLFSHVAMVVASLTQHSSQADVKAAVRGMPYLGEGTFTGSAMRRAGQLFRAARPGVRKV
AVVLTDGQADRRDAVQPAEAAAEVRAAGVEVFVIGVLNRNDPDYLEFQEEVKTMASDPDD
EHVYLIDDFRTLPDLESKLLSRICEHDDGTLFVPNSFSPSTPGENDLPETLDQGHVLHLP
EVVTQIDLPGGPETTPAPEPTPDYDDSYEDGLVDASQATALYEEPPREQGPHTVEGPQTK
GNWLYVRETTRAPGTTTPLPVLYGPDSGCDQPLDPGPCREYLVRWYYDPEANACAQFWYG
GCQGNQNNFKADADCRDACVYT
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgcgctgggtcctagagctagcctgtctgatgctgctcctgcagctctctgccggagcc
caggggaggaggaggaaggggcagagagacgacaaccaggtcatcctgaacgaagggaaa
gtgctggtgtgcccggtggagctgatgttcctggtggacagctcggagacggccaagctg
ctgctgttccagaagcagaaggagttcgtcctgcgcttcagcgagcgtctgtcccgtctg
caggcccccgggtggcgcgtgcgcctgcgcatggccgccgcgcagtacagcagcagcgtg
gtcgtggagcacaacttccgcgactggcaggacctggacgtgttccggggccgcgtggcc
gccatggcgtacatcggccacggcacctactcggcgtacgcgctgggcaacgccacgcgg
ctgttcggccgcgagacgtccccgggcagcctgcgggtggcgctgctgatgagcgacggc
gtagaccacccgcgcagccccagcgcgctggccgccgccgccgacgccaagaaccacaac
atcagggtgttcgccatccggccgtcgggccagccccgcgacgccgtggagaggctgcgc
tccgtcgccagcgcgccgccccaccagcacgtcttcagcctggccgacccccagatggag
gagcggctgtacaaggagctgaccaatgttatccaccttgggtgcccgccaccaaagtcc
tgtctgtgtgacaagggggaaagggggcaccctggcagcccgggcaaggcgggcgagcgg
gggtccgacggagccccgggtccccaagggccgcacggggagtccggcatcaatgggcgc
ccaggaatggacggcattcagggtcgttctggtgtcagaggagaaaagggggagtgtggg
gctgtaggcagccccgggcttcaagcagaaaaaggtctgcaggggctggctggggccagg
gggccaagaggagagcagggatcgaggggaggaccaggggaccagggccctgagggaccc
actggacccaaaggtgaaacggggcccgctggggcccccggacaacaaggggacgttggc
gtcggttttcccggagcgaagggagacaaggggaaccaggggcgagcgggccccagcggg
cccttgggtcagggggaacccggccccccgggaccgcccggaccgcagggcctccacggg
gcccatggggccccgggggaggggctcccagggtcaaagggggacagaggctatgagggt
cccaagggcaatcgcggacccccgggggttgggctaagaggagacaagggcagtgcaggt
gagccaggcctccccgggctgctgggattcccgggggtcgggatccagggagagaaggga
gaccaggggccggtgggcccgtccggccccagggggccctcagggcacggtgctgtgggg
cccaagggagaccaggggttcccaggggaacatggaccccagggagagagaggcaccggg
gagccagggtcaaagggcgagccagggccagaaggtaccgccgggttaccggggatcccc
ggggaggacggcgccgccgggcccaagggtgagagcggtttgccgggtcaacgcggaaca
gaaggtgcagctggcaaaggaatcccaggagagaagggggacagaggggaccgcgggata
agggggcttccagggggcacggggccggtggggcccgcaggggctaagggagagccaggc
agcttgggcatgacgggagtttctggtcctccgggccgcggcctgcctgggccgaagggg
gagtcgggcccggtgggccccagtggaccggtgggagaggcgggagtgggcatcacaggg
cccaagggcgagaggggaccccgggggccagtcggccccacaggagtggcgggggaaggt
caacccggaccccaggggctgccagggttaccagggcaacaaggagatgtaggacctgaa
ggcaatgggttgccagggaccaagggtaaccgaggaccagcgggggtcccgggcccttca
ggaccccctggagtcggccttgtggggcagaagggctctgcagggacggtcggacccaca
ggcgagccagggctcccaggagaaggcattcagggcccaaagggagagcaggggttccag
gggatcacgggcccccgagggcccccgggccacggtgtcccaggagaaaagggcggcaga
ggctccccgggggaacggggccgcaaaggagacctggggggattcggagagcccgggacc
cctggacccacggggaaacctggggagaaggggctgcgcgggttgaatagagaagaggtc
atcagaataatccgtgaaatatgtggctgcgggctgaagtgccgcgagagccccctggag
ctggtgtttgtgatcgacagctccgagagcgtggggcccgaccacttcgaggcggtgaag
gactttgtgaacgtgctggtggaccgcgtgtcggtgagccgcgaggccagccgcgtgggc
gtggtgctcttcagccacgtggccatggtggtggccagcctcacgcagcactccagccag
gccgacgtcaaggccgccgtgcggggcatgccctacctgggcgagggcaccttcacgggc
agcgccatgcgccgcgccggacagctgttccgggcggcgcggcccggcgtacgcaaggtg
gcggtggtgctgacggacggccaggccgaccggcgcgacgccgtgcagccggcggaggcg
gcggcggaggtgcgggcggcgggcgtggaggtgtttgtgatcggcgtgctgaaccgcaac
gaccccgactaccttgagttccaggaggaggtgaagaccatggcttcggaccccgacgac
gagcacgtatacctcatcgacgacttcaggaccctccccgatctggagagcaagctactg
agtcgtatatgtgagcacgatgacggcaccctgttcgtccccaactccttcagcccctcc
acgcccggggagaacgacctacccgagacgctagaccagggtcatgtactccatttacca
gaggtcgtcacacaaatcgacctgccgggggggccagagactacccccgcccccgagccc
accccagactacgacgacagctatgaggacggcctggtggacgccagccaggccacggcg
ctctacgaagagcccccccgggagcaggggccccacactgtggaggggccgcagactaag
ggcaactggctgtacgtcagggagacgacccgggcccctggcacgacgacaccactgcca
gtgctctacgggccagattctggctgtgaccagcccttggacccggggccttgccgggag
tacctggtgaggtggtattacgacccagaggccaacgcctgcgcccagttctggtacgga
ggttgccagggcaaccaaaacaactttaaggccgacgcggactgtagggacgcctgcgtc
tacacgtaa
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