Gadus morhua (Atlantic cod): 115537142
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Entry
115537142 CDS
T10832
Symbol
shh
Name
(RefSeq) sonic hedgehog protein
KO
K11988
sonic hedgehog
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
115537142 (shh)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
gmh01002
]
115537142 (shh)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gmh00536
]
115537142 (shh)
Peptidases and inhibitors [BR:
gmh01002
]
Cysteine peptidases
Family C46: hedgehog family
115537142 (shh)
Glycosaminoglycan binding proteins [BR:
gmh00536
]
Heparan sulfate / Heparin
Morphogens
115537142 (shh)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
DUF7764
Intein_splicing
Ribosomal_S6e
Motif
Other DBs
NCBI-GeneID:
115537142
NCBI-ProteinID:
XP_030204705
Ensembl:
ENSGMOG00000027117
LinkDB
All DBs
Position
23:11150586..11158271
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AA seq
414 aa
AA seq
DB search
MLVLSRMLLVVLVCLGLASPGAGCGPGRGYGRRRHPKKLTPLAYKQFIPNVAEKTLGASG
RYEGKITRSSERFKELTPNYNTDIIFKDEENTGADRLMTQRCKDKLNSLAISVMNQWPGV
KLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGTLSRLAVEAGFDWVYYESKAH
IHCSVKAENSVAAKSGGCFPGLASVSLADGGRKYVRDLTPGDSVLAVDDQGTLTVTDFIM
FLDKDSATTRLFYVIETETGERLTLTAAHLLFVESNATDARGQMTAVFASAVTAGQKVFV
LQEPNDVLTPVTVKRIYRQEHEGSFAPLTARGSLVVDHVLASCYAVVEDQQLAHWAFAPV
RFSYWLSGLLHLHVKGAAAHADGVHWYSDVMYRLGRWVLNEHAMHPLGVSRPSS
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgctcgtgctgagcagaatgctgctggtggtcctggtgtgtctggggctcgcgtcgccc
ggcgcgggctgcggaccgggaaggggctacgggaggcggcgacatcccaagaagctgacg
cctctcgcgtacaagcagttcataccaaacgtggccgagaagacgctgggcgcgagcgga
agatacgagggcaagatcacgcgcagctcggagcgcttcaaggagctcacccccaactac
aacacggacatcatcttcaaggacgaggagaacaccggggcggaccgcctcatgactcag
agatgtaaggacaagctgaactccctcgccatctcggtgatgaaccagtggcccggggtg
aagctgcgggtgacggagggctgggatgaggacggacaccacttcgaggagtccctgcac
tacgagggccgcgcggtggacatcaccacgtccgaccgcgacaagagcaagtacggcacg
ctgtcccgcctggcggtggaggcgggcttcgactgggtctattacgagtccaaagcccac
atccactgctccgtgaaagcagaaaactcagtggcggcaaaatccgggggctgtttcccg
ggcttggcgtccgtgtccctcgccgacggtggccggaagtacgttagagacctcacgccg
ggggacagcgtgctggcggtggacgaccaggggactctgacggtcacggacttcatcatg
ttcctggacaaggactcggccaccacgagactcttctacgtcattgaaacggagaccggc
gagcgcctcacgctgacggcggcgcacctgctcttcgtggagagcaacgcgacggacgcg
cgcggccagatgacggcggtgttcgcgagcgccgtgaccgcgggccaaaaggtgttcgtg
ttgcaggagcccaacgacgtcctcacacctgtgaccgttaagaggatttaccggcaggag
catgagggctcattcgccccgctgacggcgcgcggctccctagtggtggaccacgtgctc
gcttcgtgctacgccgtcgtcgaagaccaacagctcgcgcactgggcctttgcgcccgtg
cgcttctcctattggctgtccgggctgcttcacctgcacgtgaagggcgcagccgcccac
gcggacggcgtgcactggtactcagacgtcatgtaccgtctcgggaggtgggtgctgaac
gagcacgccatgcacccgctgggggtgtcgagaccctcgagctga
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