KEGG   Gadus morhua (Atlantic cod): 115537337
Entry
115537337         CDS       T10832                                 
Symbol
vim
Name
(RefSeq) vimentin isoform X1
  KO
K07606  vimentin
Organism
gmh  Gadus morhua (Atlantic cod)
Pathway
gmh04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:gmh00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    115537337 (vim)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gmh03019]
    115537337 (vim)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:gmh04812]
    115537337 (vim)
   04147 Exosome [BR:gmh04147]
    115537337 (vim)
Messenger RNA biogenesis [BR:gmh03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Factors involved in mRNA localization
    Factors that have mRNA localization signals
     115537337 (vim)
Cytoskeleton proteins [BR:gmh04812]
 Eukaryotic cytoskeleton proteins
  Intermediate filaments
   Intermediate filaments
    Type III
     115537337 (vim)
Exosome [BR:gmh04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   115537337 (vim)
  Exosomal proteins of other cancer cells
   115537337 (vim)
SSDB
Motif
Pfam: Filament Filament_head DUF1664 TolA_bind_tri bZIP_1
Other DBs
NCBI-GeneID: 115537337
NCBI-ProteinID: XP_030205040
Ensembl: ENSGMOG00000016673
UniProt: A0A8C5C3U6
LinkDB
Position
23:13947550..13957541
AA seq 464 aa
MMSNRSSSSSRPIAASSYSRMFSAERPAASRTSYSSRQYSSPAVQRSTARSSYSVSSAPQ
QGMYASKNVRLRSAHMPRLSSDAVDFSLSEAINTEFKTNRTNEKAQMQHLNDRFASYIDK
VRYLEQQNKMLSTELEQLKGQGKSRIGDLYEDEMRELRKQVDQLTNEKSQVEVDRDNLGD
DVERLRQKLQEEMLQKEDAEHNLQTFRQDVDNASLARLDLERKIESLQEEIMFLRKIHEE
ELADLQAQLQDQHVQIEMDVVKPDLTAALRDVRQQYESLATKNLHESEEWYKSKFADLAD
QQQRNGDSLRLAKTEANEYRRQVQALTCEVDSLRGTNESMERQMRELEDNFGAEAGGYQD
NIVQLEDDIRNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITTPLPTFSS
LNMRETMMESRPMVDHSKRVVIKTIETRDGHVINESTQQHDDQE
NT seq 1395 nt   +upstreamnt  +downstreamnt
atgatgagtaatcggtcaagcagcagcagtaggcctatcgccgcctcctcctactccagg
atgttcagcgcggagcgccccgccgcgtcgcgcacctcctactccagccgccagtactcc
agcccggcggtgcagcgctccaccgcccgctcgtcctacagcgtctcctcggcgccccag
cagggcatgtacgcctccaagaatgtccgtctgcgcagcgcccacatgccgcgtctctca
tcggacgccgtggacttctcgctgtccgaggccatcaacacggagttcaagaccaacagg
accaacgagaaggcgcagatgcagcacctcaacgaccgcttcgcaagctacatcgacaag
gtgcgctacctggagcagcagaacaagatgctgagtaccgagctggagcagctcaagggc
cagggcaagtcccgcatcggggatctgtacgaggacgagatgcgtgagctgcgcaagcag
gtggaccagctgaccaacgagaagtcgcaggtggaggtggaccgcgacaacttgggcgac
gatgtcgaacgcctgcgacaaaagctacaggaggagatgctgcagaaggaggacgcagag
cacaacctccagacctttagacaggatgtggacaatgcctctctggcccgtctagacctt
gagaggaagattgagtctcttcaggaggagatcatgttcctcaggaaaatccatgaagag
gagctggccgacctgcaggcccagctccaggaccagcacgtccagatcgagatggacgtg
gtcaagcccgacctcaccgccgccctgcgggacgtccggcagcagtacgagtccctggcc
accaagaacctgcacgagtccgaggaatggtacaagtctaagtttgcagacctcgccgac
cagcagcaacgcaacggagactccctccggctggccaagacggaggccaacgagtacaga
cgccaggtgcaggcgctcacctgcgaggtggactccctcagaggaaccaatgaatccatg
gaacgccagatgcgcgagctggaggacaacttcggagcagaggctggcggttaccaggac
aacatcgtccagctggaggacgacatccgcaacatgaaagacgagatggcccgccacctc
agagagtaccaggacctgctgaacgtcaagatggccctggacatcgagatcgccacctac
cgcaagctgctggagggagaggagagcaggattaccactccattgcccaccttttcttcc
cttaatatgagagaaaccatgatggagagccggcctatggtagaccactccaagagggtc
gtgattaagaccatcgagacccgagatggacacgtaatcaatgagtcaacccagcaacac
gacgaccaggaatga

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