Gadus morhua (Atlantic cod): 115537337
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Entry
115537337 CDS
T10832
Symbol
vim
Name
(RefSeq) vimentin isoform X1
KO
K07606
vimentin
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
115537337 (vim)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmh03019
]
115537337 (vim)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
gmh04812
]
115537337 (vim)
04147 Exosome [BR:
gmh04147
]
115537337 (vim)
Messenger RNA biogenesis [BR:
gmh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Factors that have mRNA localization signals
115537337 (vim)
Cytoskeleton proteins [BR:
gmh04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
115537337 (vim)
Exosome [BR:
gmh04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
115537337 (vim)
Exosomal proteins of other cancer cells
115537337 (vim)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Filament
Filament_head
DUF1664
TolA_bind_tri
bZIP_1
Motif
Other DBs
NCBI-GeneID:
115537337
NCBI-ProteinID:
XP_030205040
Ensembl:
ENSGMOG00000016673
UniProt:
A0A8C5C3U6
LinkDB
All DBs
Position
23:13947550..13957541
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AA seq
464 aa
AA seq
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MMSNRSSSSSRPIAASSYSRMFSAERPAASRTSYSSRQYSSPAVQRSTARSSYSVSSAPQ
QGMYASKNVRLRSAHMPRLSSDAVDFSLSEAINTEFKTNRTNEKAQMQHLNDRFASYIDK
VRYLEQQNKMLSTELEQLKGQGKSRIGDLYEDEMRELRKQVDQLTNEKSQVEVDRDNLGD
DVERLRQKLQEEMLQKEDAEHNLQTFRQDVDNASLARLDLERKIESLQEEIMFLRKIHEE
ELADLQAQLQDQHVQIEMDVVKPDLTAALRDVRQQYESLATKNLHESEEWYKSKFADLAD
QQQRNGDSLRLAKTEANEYRRQVQALTCEVDSLRGTNESMERQMRELEDNFGAEAGGYQD
NIVQLEDDIRNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITTPLPTFSS
LNMRETMMESRPMVDHSKRVVIKTIETRDGHVINESTQQHDDQE
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgatgagtaatcggtcaagcagcagcagtaggcctatcgccgcctcctcctactccagg
atgttcagcgcggagcgccccgccgcgtcgcgcacctcctactccagccgccagtactcc
agcccggcggtgcagcgctccaccgcccgctcgtcctacagcgtctcctcggcgccccag
cagggcatgtacgcctccaagaatgtccgtctgcgcagcgcccacatgccgcgtctctca
tcggacgccgtggacttctcgctgtccgaggccatcaacacggagttcaagaccaacagg
accaacgagaaggcgcagatgcagcacctcaacgaccgcttcgcaagctacatcgacaag
gtgcgctacctggagcagcagaacaagatgctgagtaccgagctggagcagctcaagggc
cagggcaagtcccgcatcggggatctgtacgaggacgagatgcgtgagctgcgcaagcag
gtggaccagctgaccaacgagaagtcgcaggtggaggtggaccgcgacaacttgggcgac
gatgtcgaacgcctgcgacaaaagctacaggaggagatgctgcagaaggaggacgcagag
cacaacctccagacctttagacaggatgtggacaatgcctctctggcccgtctagacctt
gagaggaagattgagtctcttcaggaggagatcatgttcctcaggaaaatccatgaagag
gagctggccgacctgcaggcccagctccaggaccagcacgtccagatcgagatggacgtg
gtcaagcccgacctcaccgccgccctgcgggacgtccggcagcagtacgagtccctggcc
accaagaacctgcacgagtccgaggaatggtacaagtctaagtttgcagacctcgccgac
cagcagcaacgcaacggagactccctccggctggccaagacggaggccaacgagtacaga
cgccaggtgcaggcgctcacctgcgaggtggactccctcagaggaaccaatgaatccatg
gaacgccagatgcgcgagctggaggacaacttcggagcagaggctggcggttaccaggac
aacatcgtccagctggaggacgacatccgcaacatgaaagacgagatggcccgccacctc
agagagtaccaggacctgctgaacgtcaagatggccctggacatcgagatcgccacctac
cgcaagctgctggagggagaggagagcaggattaccactccattgcccaccttttcttcc
cttaatatgagagaaaccatgatggagagccggcctatggtagaccactccaagagggtc
gtgattaagaccatcgagacccgagatggacacgtaatcaatgagtcaacccagcaacac
gacgaccaggaatga
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