Gadus morhua (Atlantic cod): 115538679
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Entry
115538679 CDS
T10832
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115538679 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmh03019
]
115538679 (xab2)
03041 Spliceosome [BR:
gmh03041
]
115538679 (xab2)
Messenger RNA biogenesis [BR:
gmh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
115538679 (xab2)
Spliceosome [BR:
gmh03041
]
Complex B
Other components
Prp19-related factors
115538679 (xab2)
Complex C
115538679 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_12
TPR_8
TPR_15
TPR_16
ARM_TT21_C
ARM_TT21
NRDE-2
TPR_1
LTN1_E3_ligase_6th
DUF4515
Motif
Other DBs
NCBI-GeneID:
115538679
NCBI-ProteinID:
XP_030205932
Ensembl:
ENSGMOG00000009239
UniProt:
A0A8C5B4P2
LinkDB
All DBs
Position
2:7903117..7909838
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AA seq
853 aa
AA seq
DB search
MPSADGPTDVLFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGPKATLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITETVFEEVNNCHERALVFMHKMPRIWLDYCQFLVGQSK
ITKSRRSFDRALRALPVTQHPRIWPLYLRYARKLPLPETAIRVYRRYLKLSPENAEEYID
YLRSIGRLDEAAVRLAAIVNDENFVSKEGKSNYQLWHELCDLISQNPDKVKSLKVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSEMGQDEDDDVDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDPLKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVT
FKQVDDLSGVWCEYGEMELRHENYEQALRILRKATAIPAKKAEYFDVSEPVQNRVFKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATQAVGTGERHSMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHSR
DMCVRFADMESKLGEIDRSRAIYSYCSQICDPRVTASFWQSWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMMKATTSSTGTVSDLAPGQLGLDDMKMLEQKAQQLAAEAEQ
DKAKPKEKILFVRSDTSRSELAQLAKQANPDEIDIDDDDDDDENGGEEEQGPEEVQLEQK
SVPTAVFGGLKED
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgccttcagcagatggaccaactgatgtcctctttgaggacgatgacctaccttatgaa
gaggagatcatcaggaacccttattcagtcaagtgttggatgcgatacatcgagttcaaa
cagaatggacccaaggctacactcaatatgatatacgagcgggctctgaaagagctacct
ggcagttacaagctttggtacaactacctgagagaaaggcggaagcaagtaaaggggaaa
tgtattacagagacggtttttgaggaggtcaacaactgccatgaaagggccctggtgttc
atgcataagatgcctcgtatatggcttgattactgccagttcttggtgggtcagtctaaa
atcaccaaaagtcgaaggtcatttgaccgggccctccgagcactccccgttacacaacat
ccacgtatctggcccctctaccttcgctatgcacggaagctcccactgcccgagacggcc
atccgggtctaccgcagatacctaaagctctctccagaaaacgcagaggagtacatcgac
tacctgcgctccatcggtcgcctggacgaggcggccgtgcgcctcgccgccatcgtcaac
gatgagaactttgtgtccaaggaggggaagtccaactaccagttgtggcatgagttgtgt
gacctgatctcccagaaccctgacaaagtgaagtcgctgaaggtcggggccatcatacga
ggaggcctgacccgcttcacagaccagctggggaaactctggtgctccttagctgactac
tacatccgcagcggccactttgagaaggcccgtgacgtgtacgaggaagctatcctgaca
gtggtgacggtaagggacttcacccaggtgttcgacagctacgcccagttcgaagagagc
atgatcgccgccaaaatggagaccacgtctgaaatgggtcaggatgaagacgatgacgtt
gacctggagctcaggctggcccgcttcgagcagctgatagccagacggccgctcctgttg
aacagtgtcctgctgcggcagaacccccacaacgtccacgagtggcacaaaagggtcaag
ctgtacgagggcaatccgcgacagatcatcaacacgtacacggaggcggtgcagaccgtg
gaccccctgaaggccacggggaagccccactccctctgggtctccttcgccaagttctac
gaggaaaacgagcagctggacgatgccaggaccatctttgagaaggccaccaaggtgacc
ttcaaacaagtggacgacctctcgggggtgtggtgcgagtacggagagatggagctgaga
cacgagaactacgagcaggcgcttcgcatcttaaggaaagcaacggctataccggccaag
aaggcagagtactttgatgtgtccgagcccgtccagaacagagtcttcaagtccttgaag
gtctggtctatgttggccgaccttgaggagagcctgggaactttccagtctacaaaggca
gtgtacgaccgcataatcgacctccgcatcgccacgccacaaatcatcatcaactacgcc
atgttcctggaagagcacaactactttgaggagagcttcaaggcgtacgaacgaggcatt
gcgctcttccgatggcccaacgtgtacgacatctggaacacgtacctcaccaagttcatc
gatcgctacgggggaaagaagctggagagagcgagggacctgttcgagcaggctctggat
ggctgtcctgccaagtttgcaaagactatctacctcctgtacgccaagctggaagaggag
tacggtttggcccgccatgccatggccgtctatgaacgggccacgcaggcggtgggcacc
ggggagaggcactccatgttcaacatctacatcaaaagagccgccgaaatctacggggtc
acctacaccagggccatctaccagaaggctattgaggtccttccagatgagcactccagg
gacatgtgtgtgcgattcgctgacatggagagcaagctgggggagatcgaccgctcgaga
gccatctactcctactgctcccagatctgcgaccccagggtcactgccagtttctggcag
tcgtggaaggagttcgagatccgccacggcaacgaggacaccatcagggagatgttgagg
atcaagcgcagcgtgcaggccacgtacaacacccaggtcaacttcatgtcctcccagatg
atgaaggccaccaccagctccacaggaacggtgtcagacctcgctccgggccagctgggc
ttggatgacatgaagatgctggagcagaaagcacagcagctggctgcagaggccgaacag
gacaaggccaagcccaaagagaagatcctctttgtcaggagtgacacctctcgcagtgag
ctggcccagctcgccaagcaagccaacccggatgagatcgacattgatgatgacgacgac
gatgacgagaacggaggggaggaagaacaaggcccagaggaggtgcaactggaacagaag
agcgtcccgacagctgtgtttggagggctcaaagaagactga
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