Gadus morhua (Atlantic cod): 115539773 Help Entry 115539773         CDS       T10832                                  Symbol htt Name (RefSeq) huntingtin isoform X1   KO K04533   huntingtin Organism gmh  Gadus morhua (Atlantic cod) Brite KEGG Orthology (KO) [BR:gmh00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:gmh03019]     115539773 (htt)    04131 Membrane trafficking [BR:gmh04131]     115539773 (htt)    03029 Mitochondrial biogenesis [BR:gmh03029]     115539773 (htt) Messenger RNA biogenesis [BR:gmh03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     Common to processing body (P body) and stress granule      115539773 (htt) Membrane trafficking [BR:gmh04131]  Endocytosis   Rab GTPases and associated proteins    Rab associated proteins     115539773 (htt) Mitochondrial biogenesis [BR:gmh03029]  Mitochondrial quality control factors   Regulator of mitochondrial biogenesis    Other regulator of mitochondrial biogenesis     115539773 (htt) SSDB OrthologParalogGFIT Motif Pfam:  Htt_C-HEAT Htt_N-HEAT Htt_bridge Htt_N-HEAT_1 HEAT HEAT_GCN1 HEAT_EF3_N HEAT_ECM29 Motif Other DBs NCBI-GeneID:  115539773 NCBI-ProteinID:  XP_030206416 Ensembl:  ENSGMOG00000012719 LinkDB All DBs Position 3:complement(28865433..28922226) Genome browser AA seq 3208 aa AA seqDB search MATMEKLMKAFESLKSFQQQQGPPTVEELVQKQKKEQAATKKDRVTHCLTICENIVAQSL RTSPEFQKLLGIAMEMFLLCSDDSESDVRMVADECLNKIIKALMDSNLPRLQLELYKEIK KNGASRSLRAALWRFAELAHLIRPQKCRPYLVNLLPCLTRITKRQEETVQETLAAAMPKI MAALGQFANDGEIKVLLKSFVANLKVSSPTIRRTAASSAVSVCQQSRRPSYFYTWLLNVL LGLLVPVDEEHPSHLILGVLLTLRYLLPLLQQNINGPSLKGSFGVMRKEVDVQPTPEQLL QVYELTLHYTQHRDHNVVTAALELLQQMFRTPPPELLHMLITPGSIPHAGVFRQDAEGRA RSGSIGEFIAGGGAACSPLVPRKQKGKMLSGEEDGLEDDPERADLPSGSFTAAVVGADSA PAPQADIITEQPRSSQHSLQPGDSVDLSAAEQAGGGAGGGAGTSPSGTPESPSGPDEDML SRSSSGGANVTPETADYTTPESATPEGGPLGDGGGAEPGDRSLAPSDSSQTTTEGPDSAV TPSDVAELVLDGSDSQYSGMQIGTLQDEEDDGTAPVHSDPPEPFSHSILALSKPHLLDGR GHNRQGSDSSVDRFVPKEEPTEPEPENKPSRIKGPIGHYTDQGAEPLVHCVRLLSASFLL TGQKKGLVPDKEVRVSVKALAVSCVGAAAALLPEAFFNALYLEPLGGVPADEQQYLSDVL ELVDHADPQIRGATAILCGAILQAVLIKTRYSMHSWLAGVQKATGNPLSLVDLVPLLQKT LKDESSVTCKLACSAVRHCLMTLCSSTLSELGLQLLINLLALRDCSYWLVRTELLETLAE MDFRLVNYLERKTEALHKGDHHYTGHLCLQDRVLNSVVIHLLGDDDHRVRHVAASIISRL VPRLFFDCDQGQADPVVAIARDQSSVYLQLLMHETQPPSHFTVNTITRTYRGYDLSTGLS DVTMENNLSRVVTAVSHALTSSTSRYLTFGCVEALCLLASTFPVCSWSTGWHCGYVSSSA SYSSRSGLNRARSRTLSLSQPGGAPAAPGSSAAPEPERRTLTVGVANMVLSLLTSAWFPL DLSAHQDALLLAGSLLAAAAPKCMRSPWAGEEEGGAGGAGPNAGGPAHKPEEPWAALSER SLVAMLEQLFSHLLKVLNICAHVLDDTPPGPAVKATLPSLANTPSLSPIRRKGKEKDPIE PSITPMSPKKGSEPSTGRPGDGTGPPGVSKSSTIGSFYHLPPYLKLYDVLKATHANYKVT LDLHSSQEKFGGFLRSALDVLSQLLELATLHDIGKCVEEILGYLKACFLREPTMATLCVQ QLLKTLFGTNLASQYDGALSGPSRSQGKALRLGSSNLRPGLYHYCFMAPYTHFTQALADA SLRNMVQAEHEQDASGWFDVMQKVSNQLRSSITNVTRQRGDKNAIHNHIRLFEPLVIKAL KQYTTSTSVALQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEFIEVGQFRDSDAV IPNIFLFLVLLSYERYHSKQIISIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLR GSNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIADV ILPMIAKQQIHLDSPEALGVLNTLFETVAPSSLRPVDMLLKSMFTTPATMASVSTVQLWV SGILAVLRVLISQSTEDIVLSRVHELSLSPALLGCPTIRALHQHGPPQAGAPPAAAAAVA PGNQEAGGEVAVRAQPEETFARFLLQLVGVLLEDISCRQVKVDMTEQQHAFYCQQLGTLL MCLIHIFKSGMFRRITAAASRLLKGEGPCVGGEAGAFYSLDALNARVQGLTTTHPALVLL WCQVLLIINYTNYSWWAEVHQTPRGHSLSCTKLLSPHSSGEGEDEKPEWRLAMINREVVR RGALILFCDYVCQNLHDSEHLTWLIVNHVSDLISLSHEPPVQDFISAVHRNSAASGLFIQ AIQSRCDNLSTPTMLKKTLQCLEGIHLSQSGSLLMLYVDKLLSTPFRVLARMVDTLACRR VEMLLAETLQNSIAQLPTEELDRLQDYLQSSGLAQRHQRFYSLLDRFRATVAEETTSPAP PVTSHPLDGDPPPAPELVVADKEWYVNLVKSQCCVAGDGSLLETTELLTKLPAADLSSIM SCKDFNLSLLCPSLSVGRQRLARGQGSLLMETALQVTLEQLAGVTQALPVPHQSFLPPTS PTQPEPYWDQLAEVYGEPGFFPRVLSLCRALSQYLLSVSRLPASLHIPVDKEHLITVFTV TATELMAWRLLQDALPISVDLQWGLAALCLALQQPCVWSRLASPEYTSHTCSLVRCLRLI ITAVAVSPGDQLLHPEKKKTRAEREAEEDQLDSAPPPEINVCQQQACEIMAELVEGLQSV FALGHHRNAAIPAFFTPTLRNIIISLSRLPLVNSYTRVPPLVWKLGWSPRPGGEFGTTLP EIPLDFLQEKDVFREFLYRINTLGWSSRTQFEETWATLLGVLVTQPITMDQEEEVQQEED LERTQLNVLAVQAITSLVLSAMTLPAAGNPAVSCLEQQPRNKSLKALDTRFGRKLAVIRG EVEREIQALVSKRDNVHTHHPYHAWDPVPSLSAASAAGTLISHEKLLLQINTEREMGNMD YKLGQVSIHSVWLGNNITPLREEEWGEDEEDETDTPAPSSPPTSPINSRKHRAGVDIHSC SQFLLDLYSQWLIPGTPNTRRTPVVLISEVVRSLLAVSDLFTERNQFDMMFSTLMELQKL HPMEDEILNQYLVPAICKAAAVLGMDKAIAEPVCRLLETTLRSTHLPSRVGALHGVLYVL ECDLLDDTAKTLIPVVSEYLLSNLRAIAHCVNLHNQQHVLVMCAVAFYMMENYPLDVGAE FSAGVIQMCGVMVSASEDCTPSVIYHCVLRGLERLLLSEQLSRVDGEALVKLSVDRVNMP SPHRAMAALGLMLTCMYTAVIASGSEVTGVRGQVGSAVAEAVGVTAGPVGFSSGKEKASP AGRPAHPDPQAPDSESVIVAMERVSVLFDRIRKGLPSEARVVARILPQFLDDFFPPQDIM NKVIGEFLSNQQPYPQFMATVVFKVFQTLHATGQSSMVRDWVLLSLSNFTQRSPVAMAMW SLSCFFVSASTSQWISALLPHVISRMGSSEVVDVNLFCLVAMDFYRHQIDEELDRRAFQS VFETVASPGTSYHQLLGCLQSIHHDTSL NT seq 9627 nt NT seq  +upstreamnt  +downstreamnt atggccaccatggagaaactaatgaaggccttcgagtccctgaagtcgttccagcagcag cagggtccccccacggtggaggagctggtgcagaagcagaaaaaggagcaggctgccact aagaaggaccgcgtcacacattgcttgacgatatgcgagaacattgtagcccagtctctg aggacttctccggagttccaaaagctgcttggcatcgccatggagatgttccttctctgc agcgacgacagcgaatcggacgtcaggatggtggctgacgagtgcctgaacaagatcata aaggctctgatggactccaacctacccagactccagctggagctgtacaaagagattaag aagaacggtgcctcgcggagcctgagggcggctctctggaggttcgctgagctcgcccac ctcatcaggccacagaagtgcagaccctacctggtgaacctgctgccctgcctgacccgg atcaccaagcgccaggaggagacggttcaggagaccctcgccgccgccatgcccaagatc atggccgcgctcggacagttcgccaacgacggggaaatcaaggtgctgctgaagtcgttt gtggccaacctgaaggtcagctctcccaccatcagacgcacggccgctagctcggccgtg agcgtgtgtcagcagtccagacggcccagctacttctacacctggctgctcaacgtgctg ctgggcctgctggtgccggtggacgaggagcacccgagccacctgatcctgggcgtgctg ctgacgctgcgctacctgctgccgctgctgcagcagaacatcaacgggcccagcctgaag ggcagcttcggggtgatgaggaaggaggtggacgtccagcccacgccggagcagctgctg caggtgtacgagctgaccctccactacacgcagcaccgcgaccacaacgtggtcacggcg gcgctggagctgctgcagcagatgttccggactccgcccccggagctgctgcacatgctc atcacgcccggcagcatcccgcacgccggcgtgttccggcaggacgccgagggccgtgcg cgctccggcagcatcggggagttcatcgccggggggggggcggcctgcagtcccctcgtc cccaggaagcagaaaggcaagatgctgtccggggaggaggacgggctggaggacgacccc gagagagcggacctaccctctggctccttcactgcggcggtggtgggggccgacagcgcg ccggccccccaggcggacatcatcacggagcagcctcgctcctcccagcacagcctgcag ccgggcgactcggtggacctcagcgccgcggagcaggccgggggcggggccgggggcggg gccgggacctccccctcggggacccccgagtcccccagcggccccgacgaggacatgctc agccgcagctccagcgggggggccaacgtgaccccggagacggcggactacaccacgccc gagagcgccacgcccgagggggggcccctgggggacggcgggggggcggagcccggcgac cgctcgctggcgcccagcgactcgtcccagacgaccacggaggggccggactcggccgtc acgccctcggacgtcgcggagctggtgttggacggcagtgacagccagtactcggggatg cagatcggaaccttgcaggatgaggaagacgacggcaccgcccccgtccacagcgacccc ccagaacccttctcccactccatactggctctgagcaagcctcacctgctggacggcaga ggacacaacaggcagggctcggacagcagtgtggaccgcttcgtaccgaaggaagagccg acagaacccgaaccggagaacaagccctcgaggatcaagggtcctattggccactacacg gaccagggggcggagcctctggtgcattgtgtccgcctcctctccgcctccttcctcctg actggacagaagaagggtctggtgccggacaaggaggtgcgtgtgagcgtgaaggcgctg gcggtcagctgcgtgggggcggcggctgctctgctccccgaggccttcttcaacgccctg tacctggagccactgggcggggtcccggccgacgagcagcagtacctcagtgacgtgctg gagctggtggaccacgcggacccccagatccggggggccacggccatcctctgcggcgcc atcctgcaggcggtgctcatcaagacgcgctacagcatgcacagctggctggccggcgtg cagaaggcaacgggtaaccctctgtccctggtggacctggtgcctctgctccagaagacc ctgaaggacgagtcgtctgtcacctgcaagctggcctgctctgccgtcaggcactgcctc atgacgctctgcagcagcactctgagcgagctgggcctgcagctgctcatcaacctccta gccctgagggactgctcctattggctggtcaggacggagctcctggagaccctggctgag atggacttccggttagtgaactacctggagaggaagactgaagcattacacaaaggagac catcactacaccgggcatctgtgtctgcaggaccgggtgctgaacagcgtggtgatccac ctgctgggagacgatgaccacagagtgaggcacgtggccgcctccatcatcagcaggctg gtgccgcggctgttcttcgactgcgaccagggccaggcggaccccgtggtggccatcgcc cgggaccagagctccgtctacctgcagctgctgatgcacgagacccagcccccgtcccac ttcaccgtcaacaccatcaccaggacgtatcgcggttacgacctgtccacgggcctgtcg gacgtaaccatggagaacaacctgtccagggtcgtcacggccgtgtcccacgcactcacc tcgtccacctccagatacctcaccttcgggtgcgtagaggccctgtgtctcctggcctcc accttcccggtgtgcagctggagcaccggctggcactgcggctacgtcagctccagcgcc agctactcctcccgctccggcctgaaccgcgcccggagccgcacgctcagtttgtcccag cctggtggggcccccgcggcccccggctcctcggcggccccggagcccgagcggaggacc ctgacggtgggcgtggccaacatggttctgtccctgctgacgtcggcctggttccccctg gacctgtcggcccaccaggacgccctgctgctggccggcagcctgctcgccgcggccgcg cccaagtgcatgcgcagcccctgggccggggaggaggaggggggtgcgggcggggcgggc cccaacgccggcggccctgcccacaagccggaggagccctgggccgcgctgtcggagcgc tccctggtggccatgttggagcagctcttctcccacctgctcaaggtgctcaacatctgc gcccacgtgctggacgacacgccccccggacctgctgtcaaggccactctgccctcgctg gccaacaccccctccctcagccccatccggaggaaggggaaggagaaggaccccatcgag cccagcatcacccccatgagccccaagaagggcagcgagcccagcacgggacgtccgggc gacggtacgggccccccgggcgtcagcaagtccagcaccatcggcagcttctaccacctg cccccctacctcaagctctacgacgtcctcaaggccacgcacgccaactacaaggtgacg ctggacctccacagcagccaggagaagtttggtgggttcctgcgctctgcgctggacgtg ctgtcccagctgctggagctggccacgctccacgacatcggcaagtgtgtggaggagatc ctgggctacctcaaggcctgcttcctgagggagcccaccatggccaccctgtgcgtccag cagctgctgaagactctgttcggcaccaacctggcctcccagtacgatggggcgctgagc gggcccagccgctcccaggggaaggccctccggctgggctcctccaacctgcggccgggc ctctaccactactgcttcatggcgccctacacgcacttcacccaggccctggccgacgcc agcctgaggaacatggtgcaggcggagcacgagcaggacgcgtccgggtggttcgatgtg atgcagaaagtgtccaatcagctcaggtctagcatcaccaacgtgacgcggcagagggga gacaagaacgccatccacaaccacatccgtctgttcgagccgctggtgatcaaggccctg aagcagtacaccaccagcacgtcagtggccctgcagaggcaggtcctggacctgctggcc cagctcgtccagctccgcgtcaactactgcctgctggactcggaccaggtgttcatcggc tttgtcctgaagcagtttgagttcattgaagtcggccagttccgggactctgacgcggtg atccccaacatcttcctgttcctggtgctgctgtcgtacgagcgctaccactccaagcag atcatcagcatccccaagatcatccagctgtgtgacggcatcatggccagcggcaggaag gccgtcacccacgcgatcccggcgctgcagcccatcgtccacgacctgttcgtgctgcgc ggctccaacaaggcggacgcgggcaaggagctggagacgcagaaggaggtggtggtgtcc atgctgctgaggctcatccagtaccaccaggtgttggagatgttcatcctggtcctccag cagtgtcacaaggagaacgaggacaagtggaagaggctgtcgcggcagatcgccgacgtc atcctgcccatgatcgccaagcagcagatccacctggactcccccgaggctctgggcgtg ctcaacaccctcttcgagacggtggccccctcctccctccggcccgtcgacatgctgctg aagagcatgttcaccacccccgctaccatggcctcggtctccaccgtccagctgtgggtg tccggtatcctggccgtgctgcgcgtgctgatctcccagtccaccgaggacatcgtcctg tcccgcgtccacgagctctccctgtcccccgcgctgctgggctgccccaccatccgggcc ctccaccagcacgggcccccccaggccggggccccccccgccgccgccgccgccgtcgcc cccggcaaccaggaggcgggcggggaggtggctgtgagggcccagcccgaggagacgttt gccaggttcctcctccagctggtgggggtgctgctggaggacatctcgtgccgccaggtg aaggtggacatgacggagcagcagcacgccttctactgccagcagctgggcaccctgctc atgtgcctcatccacatcttcaagagcgggatgttccggcgcatcacggcggcggcgtcc cgcctcctgaagggggaggggccctgcgtgggcggggaggcgggggccttctactcgctg gacgccctgaacgcgcgggtccagggcctgaccaccacccaccctgccctggtgctgctc tggtgccaggtgctgctcatcatcaactacaccaactactcctggtgggccgaggtgcac cagacccccaggggccacagcctgtcctgcaccaagctgctgagcccccactcctccggg gagggcgaggacgagaagcccgagtggcgtctggccatgatcaacagggaggtggtccgc aggggcgcgctcatcctcttctgtgactacgtgtgtcagaacctccacgactctgagcac ctcacctggctgatcgtgaaccacgtcagcgacctcatcagcctgtcccacgagccgccg gtgcaggacttcatcagcgccgtgcaccgcaactcagccgccagcggcctcttcatccag gccatccagtcgcgctgcgacaacctctccacgcccaccatgctgaagaagaccctgcag tgcctggaggggatccacctcagccagtcgggctccctgctgatgctgtacgtggacaag ctgctcagcacgcccttcagggtgctggcccgcatggtcgacacgctggcctgtcgccgt gtcgagatgctgctggcagagacgctgcagaacagcatcgcccagctgccaacggaggaa ctggaccggctccaggactacctccagtccagcgggctggcccagaggcaccagaggttc tactctctgctggacaggttccgagccactgttgccgaggagaccactagccccgccccc ccggtgacgtcacaccccctggacggtgatccgccacctgccccggaactggtcgtcgcc gacaaggagtggtacgtgaacctggtgaagtcccagtgctgtgtggccggggacggctcg ctgctggagaccaccgagctgctcaccaagctgcccgccgccgacctctccagcatcatg agctgcaaggacttcaacctgagcctgctctgcccctccctgagcgtgggaaggcagcgg ctggcccggggtcaggggtcgttgctcatggagacggcgctgcaggtcaccctggagcag ctggcgggtgtcacccaggcacttcctgtgccccaccagtccttcctgccgcccaccagt ccgacccaacccgagccctactgggaccagctggctgaagtttacggcgagccagggttc ttccccagggtgctctctctgtgccgggcgctgtcccagtaccttctgagtgtcagcagg ctgcccgcctcgctgcacatccccgtcgacaaggagcacctgatcaccgtcttcaccgtc acggccaccgagctgatggcgtggcggctgctgcaggatgcgctgcccatcagcgtggac ctccagtgggggctggccgccctctgcctcgccctgcagcagccctgcgtgtggagccgc ctggccagccccgagtacacctcccacacctgctccctggtgcgctgcctgcgcctcatc atcaccgcagtggcggtgagtccgggcgaccagctgctgcatccagagaagaagaagacc agggcggagcgggaagcggaggaggaccagctggactccgcccccccgcccgagatcaac gtgtgccagcagcaggcgtgtgagatcatggcggagctggtggagggccttcagagcgtc ttcgctctcggtcaccataggaacgccgccatccccgccttcttcacgcccaccctgagg aacatcatcatcagtctgtcgcgcctgccgctggtcaacagctacacccgcgtgccccca ctggtgtggaagctgggctggtctccgcgccccgggggcgagttcggcaccacactgccg gagatccccctggacttcctgcaggagaaggacgtcttcagggagttcctgtaccgcatc aacaccctgggctggagcagcagaacccagttcgaggagacctgggccaccctgctgggg gtgctggtcacccaaccaatcaccatggaccaggaggaggaggtgcaacaggaggaggac ctggagcggacccagctcaacgtgctggcggtgcaggccatcaccagcctggttctgagc gccatgacgctgcccgccgccggcaacccggccgtcagctgcctggagcagcagccccgc aacaagagcctgaaggccctggacacgcgatttggcaggaagttggcggtgatccggggg gaagtggagcgggagatccaggcgctggtgtccaagagggacaacgtccacacgcaccac ccctaccacgcctgggaccccgtgccctcgctgtccgccgcctccgccgcagggactctg atcagccacgagaagctgctgctgcagatcaacacggagagagagatgggcaacatggac tacaaactaggacaggtgtcgatccattcggtctggctcggcaacaacattacacccctg agggaggaagagtggggtgaggatgaagaggatgagacagacaccccagcaccctcctcc cccccaacctctcccatcaactccaggaagcaccgggccggggtggacatccactcctgc tcccagttcctcctggacctctacagccagtggctcatccccgggacccccaacaccagg cggacccccgtggtgctgatcagtgaggtggtccgatcgctgctggcggtgtcggacctg ttcacggagaggaaccagttcgacatgatgttctccaccctgatggagctgcagaagctt caccccatggaggacgagatcctcaaccagtacctggtgcccgccatctgcaaggccgcg gccgtgctgggcatggacaaggccatcgcggagccggtgtgccggctgctggagaccacc ctgcgcagcacccacctgcccagcagggtgggggcgctccacggggtgctgtacgtcctg gagtgcgacctgctggacgacacggccaagacgctcatccccgtcgtctccgagtacctg ctgtccaacctgcgcgccatcgcccactgcgtgaacctccacaaccagcagcacgtgctt gtgatgtgcgcggtggcgttctacatgatggagaactaccccctggacgtgggggccgag ttctccgccggagtcatccagatgtgcggggtgatggtgtcggcctccgaggactgcacg ccctcggtcatctaccactgcgtgctgcgcggcctggaacgcctgctgctgtcggagcag ctgtcgcgcgtggacggcgaggcgctggtgaagctcagcgtggaccgcgtcaacatgccc tcgccccaccgcgccatggccgccctgggcctcatgctcacctgcatgtacaccgccgtg attgcgtcggggtcagaggtgacaggggttagaggtcaggtgggctctgcggttgcggag gctgtgggcgtcacagcgggtcctgtgggtttctcctcaggcaaggagaaggccagcccc gccggacgccccgcccaccccgacccccaggcccccgacagcgagtcggtcatcgtcgcc atggagagggtctccgtgctcttcgacaggatccgtaagggccttcccagcgaggcgcgc gtggtggcccggatcctgccccagttcctggacgacttcttcccgccgcaggacatcatg aacaaggtcatcggggagttcctgtccaaccagcagccgtacccccagttcatggctact gtcgtcttcaaggtgttccagacgctccacgccacggggcagtcctccatggtgcgcgac tgggtgctgctgtcgctctccaacttcacccagcgctcccccgtcgccatggcgatgtgg agcctctcctgcttcttcgtgtcggcctccacctcccagtggatctccgccctactgccc cacgtgatcagcaggatgggcagcagcgaggtggtggacgtgaacctcttctgcctggtg gccatggacttctaccggcaccagatcgacgaggagctggaccgacgcgccttccagtcg gtgttcgagaccgtggcctccccgggcacctcctaccaccagctgctggggtgcctgcag tccatccaccacgacacctccctctga

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