Gadus morhua (Atlantic cod): 115539882
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Entry
115539882 CDS
T10832
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115539882 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmh03019
]
115539882 (parn)
Enzymes [BR:
gmh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
115539882 (parn)
Messenger RNA biogenesis [BR:
gmh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
115539882 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
Cyc-maltodext_C
NCBP3
RRM_1
Motif
Other DBs
NCBI-GeneID:
115539882
NCBI-ProteinID:
XP_030206604
Ensembl:
ENSGMOG00000003231
LinkDB
All DBs
Position
3:complement(19301658..19309440)
Genome browser
AA seq
681 aa
AA seq
DB search
MEVTRKNFKDCLSAVYSAIDEADFLAIDGEFSGISDGPNVSALTNGMDTPEERYAKLKKH
SMDFLLFQFGLCTFKYDTEASKYIIKCFNFYIFPKPFNRASPDIKFICQSSSIDFLASQG
FDFNKVFRHGIPYLNQEEEGRVREQAEERRNQQANGAATPSYISPSSKGPAHVPEEHKDF
ISRVIEKVDGLFTNSEKTVELEPCTGFQRKLIYQTLNWKYPKGLHVETIETEKKERYIQI
SKVDDDERKRREQQKLEKEQEELNDAVGFSRVIHAISKSGKLVVGHNMLLDVMHTIHQFY
CPLPQDLQDFKEVSMCVFPRLLDTKLMSSTQPFKDLIPITSLAELERRLKLAPFKSPKVE
TAEGFPRYDTAQEQLHEAGYDAYITGLCFISMANYLGSFLTPPKAHISPRSKLMEPFFNK
LFLMRIIDIPYLNMTGPDLRPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSA
FVSLSQTDQVQIAMNTSRYAESYRIQTYAEYMKGRRQNKDVNSQPDQSWGEEGWVKSPTT
AGTTGYGYKGTLGKRSISPNQADQGAGEAQATDGWNQSSHPDGMGNKKLKTDELYSQSYA
GVVDSRTSEGWLKTPCTSESSDLSPIHEEQSAEGPVPANEAENTWQNPVTNQGKKARKNN
KKRKNEGSESTASLFDVPAVW
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggaggttacacggaaaaattttaaagactgtttaagcgccgtgtatagtgcgatagac
gaggctgatttccttgctatcgatggtgaattctcaggtataagcgatgggcctaatgtc
agtgcactcaccaatggaatggatacacctgaggaacgatacgcgaagcttaaaaagcat
tccatggactttctattgttccagtttggtctgtgtacgttcaagtatgacacggaggcg
tccaagtacatcatcaagtgttttaatttttatatattcccgaaacccttcaacagagca
tcacccgacattaaattcatctgtcaaagttcaagtattgactttctagcaagccagggg
tttgactttaacaaggtcttccgccatgggatcccctacctaaaccaggaagaggaaggc
cgtgtgagggagcaggcagaggagagacggaaccagcaggccaatggagccgcgacaccg
tcctacatctcaccgtcctctaaagggcccgcgcacgtacccgaagaacacaaggacttc
atcagccgtgtcatcgagaaggtcgatggcctcttcaccaactctgagaagacggtggag
ttggagccatgtaccgggttccagagaaagctgatataccagactcttaactggaagtac
cctaagggtcttcatgtggagaccatagagacggaaaagaaagagcgctacattcagatc
agcaaagtggacgacgatgagcgaaagaggagggagcagcaaaaactggagaaggagcag
gaggagctaaatgatgcagttggcttctcaagggtcatccatgccatctctaaatctggt
aagcttgtggtcggacacaacatgcttctggatgtcatgcacacaatccaccagttctac
tgcccactgccacaggacctccaagacttcaaagaagtatccatgtgtgtgttcccaaga
ctcctggacactaaactgatgtcttccacgcaaccttttaaggacttgattcccatcacc
tctctggcagagctggagaggcgcctcaagttggcccccttcaaatctcctaaagttgag
actgcagaaggcttcccccgatatgacacagcccaagagcagctccatgaggccggctac
gatgcctacatcactggcctgtgtttcatctccatggcaaattacctgggttcatttttg
acccctcccaaagcccacatctctcctcgctcgaaactaatggagccctttttcaacaag
cttttcttgatgaggatcattgatattccctacctcaacatgaccggccctgacttgcga
cccaagcgggaccatgttctctacgtcaccttccctaaagaatggaaaaccagcgacctc
taccagctcttcagtgccttcggtaatatccaggtgtcctggatagacgacacctcagct
ttcgtctctctcagtcagacggaccaggttcagatagcaatgaacaccagtcgctatgca
gagagctaccgaatccaaacgtacgcagagtacatgaagggccggcggcagaacaaggat
gtcaacagccagcctgaccagtcctggggagaggagggctgggtcaagtcccccactaca
gctggaactacgggctacggctataaagggactttgggtaagcgcagcataagtcccaat
caagcagaccaaggggctggagaagctcaggccaccgacggctggaatcaaagcagccat
ccagatggcatggggaacaagaagctgaagactgatgagctatactctcaatcgtacgca
ggagtggtcgacagcaggacgtccgaaggctggcttaagactccgtgtacttcagagtct
tcagatttgagtccgatccatgaagagcaaagtgccgaaggcccagttccagctaatgag
gctgaaaacacctggcaaaaccctgtgaccaatcaaggcaagaaggctcgtaagaacaac
aagaagaggaagaatgaaggttctgaatcaactgcatccctgtttgatgtccccgcggtc
tggtag
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