Gadus morhua (Atlantic cod): 115540059
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Entry
115540059 CDS
T10832
Symbol
slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
115540059 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gmh04121
]
115540059 (slx4)
03400 DNA repair and recombination proteins [BR:
gmh03400
]
115540059 (slx4)
Ubiquitin system [BR:
gmh04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
115540059 (slx4)
DNA repair and recombination proteins [BR:
gmh03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
115540059 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-C2H2
B129_C2H2-zf
Motif
Other DBs
NCBI-GeneID:
115540059
NCBI-ProteinID:
XP_030206897
Ensembl:
ENSGMOG00000028154
LinkDB
All DBs
Position
3:complement(24757573..24773778)
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AA seq
1833 aa
AA seq
DB search
MDDSDQDFADICSKFVKRVRKKAVDPVLSRKAEPQSFSQTRNVTADPSKKTRKKKVVVPE
YKPIQAKPGPGGDWAPTRRPEQSLDNGYALCDAGDGGPPGLTDSGEALHVVEGGQRARDK
VLLRMQQFKRASPHMLVHDDRSDAVPKQPKDKDEPPQETGSSDAALALRLQQSQDPQAAQ
DPERQASLDLCLHQDPDQQRVDSLEDQGLFFCQLCQRNMSHMTPEGRTQHLNRCLDETEG
EPAALGAPPPPPRVADCPICGKRFKAPKSRAAHLKRCSADMGVAPAVLLQCLQRQAAAVQ
SDGGDGGGGSPPPRGASRGSKRKEPADPSLPTTKRPRKKAQPLDEETQVALALCSSLLER
EKELEREAAAALAAVAPRLQWRAEAGQGRRKGGKRRKGGPPRPPPLLLVQDALAAQTRVQ
ERVAALLLRQRPPSPPTPPRCPSRLPSAPARPLWSASALRDDADTRGPAQYYTPELRDLL
LTRDPPGTTVASIAKVPPEPSIQSPVKADPQMTPLPPLPSPTPPCPSPSWAGTSRLSVGS
QALRDVMELADEGRSLSQWLRDEACGTAVVADFPLSGFIPDECDAKMGLSGFLPGGDAAA
AAASSQPIRDSGRPGGQPESGWRESVALSRLSCDLSSMVNNPQLSDVQVQVDSGEVFSVH
SFMLYARCPLLAQMVHDAGFGVQEEGLPSTQRVLLGDCPGEAVLALLQYLYTGRCPVPAG
PLLPALLGLATRFDLEELQSLAQLYLEEADSAPQEDPVEAGQPWDNHHPSPGVEPARGDQ
DFTKLLRSMWSEEEGEEGEEEGGGEATAGTSVDRRGDDVNGGGQRDGRLASGDGDGHEER
VNDEEMEEIYEFAATQRKLAEERESTGSVEEEEDEDEEPTSAEDNLFTKAGGPEHDETPV
CVEADARERSPGCQVPSSLSYSRLFSGSWDVCEEEFPASPPLSSPRPSTSTLGPPQATPT
PPRLRSPEGAFPRGDGAATARSDATCLQSSPSEIIDLSDSPGPPSTPGLPLPGLSPGRHR
RGAPDADAPGGGRPGNPDPAADPGTSPKREGAAPRGAGRPASPDPPPPRRRAEPELIVLS
DSSSGEDEGEGPAPAASPGPTPPHSPVWSQRHRRYTKIKAPSLHPGPCTSPPSGGDVQGP
GWSDGAEEGGGDGGQGSARGVVVVAAQSPDQLGFSPEVSWLIPATPPPPAGHPSSSICTQ
TRSSMFRTRLFPRASASASTSSPPSSPRSKGRAHSGSSASDGPPAKSKGPESSLDAQPLP
GTFTPPAPGARPPGFPHPPLSSSSTKSTPAHGHPGPYSSTPLHARPPKPPVPLGTSLVRG
DPAREALGRGHLSRSDPSRSASPSSLCRDPSGPDGDADVGRSGRTLGSDHRHGNTVDPEK
IGDADESGRGEQRGSGVEAAVERGAESEAGHERGSELGFCQSFMDEPPMAFNDSWGLDGG
GGGGGGGEGHGGQAVCFSLRLEDSEGVSSHQHSPVSPHSLQQHPPLTPRRYPDRGPNPSA
SRSPGTPPSTTAAAARPSVDPDTPHRVPEVNGSLLDPQLWDSWQEEPEEQDEALPVSQKG
NAAVRFQTPVSTGSRKRIALVPITPMPSYSDMDTPDLKNKLDRFGVRPLPKRQMILKLRQ
IHQYTHQLVHSDDEEEEDGAALLGGPGPTRPRPTASSARPPSGSQGPQFKRPGVPTGASP
VKRGHEDPEPLSSSQGSSSSSTVASEESERSNPELLHSSSDSESDGDGAVTASQAAGRQR
DRVQAVRAFILSNADLHLQVLRYQPLVLAQLQARLKAAGIRLGAAKLMDYLDSQCITVTT
AKPGGRPRRKQRAKGERGARGRKRKTAPATEGR
NT seq
5502 nt
NT seq
+upstream
nt +downstream
nt
atggatgactcggatcaggatttcgcagacatctgttctaaatttgtaaaacgagttcgt
aagaaagcagttgatccggtgttgtcccggaaagcagagccccagtctttcagccagacc
aggaacgtcactgctgatccgagtaagaagacgcgaaagaagaaggtcgttgttccggaa
tacaagcccatccaagccaagcccggtcctggaggcgattgggctccaacacgtcgacct
gagcaaagtctggacaatggatatgccctgtgtgatgccggagatggtgggccacctggg
ctcacggattcgggtgaagcactgcacgtcgttgagggaggccaacgtgccagagacaaa
gtactgttgcgaatgcagcagtttaagagagccagcccacacatgctggtacacgacgac
aggagcgacgcggtccccaagcaaccaaaagacaaagacgagccgccgcaggagactggg
tccagcgatgccgctctggccctccgtctacagcagagccaggacccccaggcagcccag
gaccctgagcggcaggcctcccttgacctctgtctgcatcaggacccggaccagcagcgc
gttgactccctggaggaccaaggcctgttcttctgtcagctctgccagcggaacatgtcc
cacatgacccccgagggacgcacgcagcacctcaacaggtgtttggacgagacggagggc
gagcccgccgctctcggcgcgccccctccccccccccgcgtggccgactgccccatctgc
gggaagaggttcaaggccccgaagagccgcgcggcccacctgaagcgctgctccgcagac
atgggtgtggccccggccgtgctgctgcagtgcctccagaggcaggcggcggcggtgcag
agcgacggcggcgacggcggcggcggcagcccccccccgcgtggggcatccagaggctcc
aaaaggaaagagccagcggaccccagcctgcccaccacgaagaggcccaggaagaaggcc
cagccgctggacgaggagacccaggtggccctggctctgtgctcctcgctgctggagcga
gagaaggagctggagagggaggcggccgccgcgttggccgccgtggcgcctcggctccag
tggagagcagaagcaggtcagggccggaggaagggaggcaagaggaggaagggcgggccc
ccccggccgccgccgctcctgctcgtccaggacgccctggccgctcagaccagggtgcag
gagcgggtcgccgcgctcctgctgcggcagcgccccccctccccgcccacgcccccccgc
tgccccagcagactgccttctgctcccgctcgccccctgtggagcgcgagcgcactgcgg
gacgacgcggacacccgcggccccgcccagtactacaccccggagctccgggacctcctg
ctgaccagggacccccccgggacgaccgtggcctccatcgccaaggtacctccggaacct
tccatccagtcccccgtcaaagcagacccccagatgacgcctcttcctcctctcccctct
ccgacacccccgtgtccgtccccatcgtgggctggaaccagccggctgtctgtgggcagc
caggccctgagagacgtgatggagctggctgacgagggccggtccctgtcccagtggctc
agagacgaggcgtgtggcaccgccgtcgttgctgacttcccgctcagcggattcatccca
gatgagtgcgacgccaagatgggcctcagcggctttctccccgggggggacgccgccgcc
gccgccgcctccagccagccaatcagggactccggaaggccgggcggccaaccagagagc
ggctggcgagagtcggtggcgctgtccaggctgtcatgtgacctgagcagcatggtgaac
aaccctcagctcagcgacgtgcaggtccaggtggacagcggagaggtcttctccgtccac
tcgttcatgctgtacgcccgctgccccctgctggcccaaatggtgcatgacgccggcttc
ggggtgcaggaggagggcctgcccagcacccagcgggtgctgcttggggactgtcccggg
gaggccgtgctggctctgctgcagtacctctacacgggccggtgtcccgtgcccgccggc
cccctgctacccgccctcctggggctggccaccagatttgacctggaggagctccagagt
ctggcccagctctacctggaggaggcggactcggcgccacaggaagacccagtcgaggct
gggcagccctgggacaaccaccaccccagccccggcgtggagccagcgcgcggggaccag
gacttcaccaagctgctgcgctccatgtggagcgaggaggagggggaggagggggaggag
gagggtgggggagaagccacagccggcacatcggtggatcggcgaggcgacgacgtcaac
ggcggcggccagcgagacggtcggctggcgtccggagacggggacgggcacgaggagcgc
gtgaacgacgaggagatggaggagatctacgagttcgccgccacgcagaggaagctggcg
gaggaacgggagagcacggggtcggtggaggaggaggaggatgaggatgaagagcccaca
tcggcagaggacaacctgttcaccaaggcaggcggtccagaacatgacgagaccccggtg
tgtgttgaagcagacgcccgtgagcggagccccggttgccaggttccaagcagtctcagc
tacagccgcctcttctctggctcctgggacgtctgcgaggaggagttccccgcctccccc
ccgctctccagcccccggccctctacctctacccttggcccccctcaagcgactcctact
ccgccccgactccggtcccccgaaggagccttcccccgaggggacggggcggccacggcg
cgctcggacgccacctgcctccagtcttcgcccagcgagatcatcgacctctccgacagc
cccggcccccccagcacgcccggcctgcccctcccgggtctgtccccgggcaggcaccgc
cggggagcgccggatgcggacgcgcctgggggcggtcgccccggcaaccccgatcccgcc
gccgacccggggacgtcgccgaagagagagggtgccgctcctcggggcgcaggtcggccc
gcgtcgccggaccccccgcccccgcggagacgcgcggagccggagctgatcgttctgtcg
gactcctcctccggcgaggacgagggcgaaggcccggcccccgccgcctcccccggaccc
accccgccccactccccggtctggtcgcagcgccaccggcggtacacgaagatcaaagcg
ccgtcgctccacccaggaccctgcacatctcccccttcggggggagatgtgcagggtcct
gggtggagcgacggcgccgaggagggagggggcgacggcgggcagggctccgcccgtggc
gtggtcgtcgtggccgcccagagtccggaccagctgggcttctccccggaggtgtcctgg
ctgatcccggccacgccgccgccgccggccggccaccccagcagcagcatctgcacccag
acccgtagcagcatgttccggacgcggctcttccccagagccagcgccagcgccagcacg
tcctcgcccccctcttccccccgctccaaaggcagagcgcattcggggagctcagcctca
gacggccctccggcaaagagcaaggggccagagtccagcctcgacgctcagcccctgccc
gggacgtttaccccgccggcccccggcgcgagacctcctggtttcccccacccgcctctc
tcctcctcttcgacgaagagcacccccgcccacggccatccggggccgtacagcagcact
cccctgcacgcgcggccccccaagccccccgtccccctggggacctccctggtgcgcggc
gaccccgcgagggaggcgctggggcgcgggcacctctcccggtcggacccgtcgcgctcg
gcctccccctcctcgctttgccgagacccctcgggtccagacggagacgcggacgtcggt
cgctccggacgcacgctgggatcggatcatcgccacggcaacaccgtggaccccgagaag
atcggcgacgcagacgagagcgggcggggcgagcaaagagggagtggagtggaagcagcg
gtggaaaggggggcggagtcggaggcggggcacgaacgggggtccgaactcggtttctgc
cagagcttcatggacgagccccccatggccttcaacgactcgtggggactggacgggggc
ggcggcgggggcggcggcggcgagggacacggcggccaggcggtgtgcttcagcctgagg
ctggaggacagcgagggggtcagctcgcaccagcacagccccgtctcccctcactccctg
caacaacacccccccctcactccacgccgttacccggacagagggccgaacccctccgcc
agcagaagcccgggcacgcccccctccaccaccgccgccgccgcccgcccgtcagtggac
cccgacacccctcacagagtcccggaggtcaacggaagcctcctggacccccagctgtgg
gacagctggcaggaggagccggaggaacaggatgaggcgctccctgtctcgcagaagggg
aacgctgcggtgcgattccagaccccagtgtccactgggagcaggaagcggatcgccctc
gtgcccatcacccccatgcccagctactccgacatggacacccccgacctcaagaacaag
ctcgaccggttcggtgtgcgtccgttacccaagagacagatgatcctgaagctgaggcag
atccaccagtacactcaccagctggtccactccgacgacgaggaggaggaggatggggcg
gccctcctgggcggccccggacccaccaggcctcggcccaccgcctccagcgcccggccc
ccctccggttcccaggggcctcagttcaaacggccgggcgtgcccacaggcgcctccccg
gtgaagcggggccacgaggacccggagcccctgtcctcgtcccagggctccagctcctcc
tccacggtggccagtgaggagtcagagaggtccaacccggagctgctgcactcctcctcc
gacagcgagtcggacggcgacggcgccgtcaccgcctcgcaggcggccggacgccagcgg
gaccgcgtgcaggcggtgcgggccttcatcctgtccaacgccgacctgcacctccaggtg
ctgcgctaccagcccctggtgctcgcccagctccaggcccgcctcaaggccgccggcatc
cgcctgggcgccgccaagctcatggactacctggactcccagtgcatcaccgtgacgacg
gccaagccgggggggcgcccgcggcggaagcagagggccaagggggagaggggagcgagg
gggagaaagaggaagacggctccggccacggagggaaggtag
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integrated database retrieval system
