Gadus morhua (Atlantic cod): 115540171
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Entry
115540171 CDS
T10832
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115540171
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gmh03041
]
115540171
03009 Ribosome biogenesis [BR:
gmh03009
]
115540171
Enzymes [BR:
gmh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115540171
Spliceosome [BR:
gmh03041
]
Complex A
U2 snRNP components
U2 related factors
115540171
Complex B
115540171
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
115540171
Ribosome biogenesis [BR:
gmh03009
]
Eukaryotic type
90S particles
Helicases
115540171
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
SRP54
Cas3-like_C_2
Flavi_DEAD
AAA_25
AAA_29
nSTAND3
nSTAND_NTPase5
AAA_7
Motif
Other DBs
NCBI-GeneID:
115540171
NCBI-ProteinID:
XP_030207106
Ensembl:
ENSGMOG00000012481
LinkDB
All DBs
Position
3:complement(9519635..9530206)
Genome browser
AA seq
757 aa
AA seq
DB search
MSKRHRLDLGDDHSTSKKRSDGRDRDRDREDRSRDRDRDRDRDREKDVKPPGVSYNCVPL
GAAIAPIKPSLAMHQQINPFTNLPHTPRYYEILKKRLQLPVWDYKESFNDIITRHQSFVL
VGETGSGKTTQIPQWCVDLVKGIPGPKRAVACTQPRRVAAMSVAQRVADEMDIMLGQEVG
YSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKE
VVRQRSDLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLEAAIRT
VIQIHMCEEEEGDCLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQQQQ
RIFEPPPPRKPGGGIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLV
TAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLG
IDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKLVIAS
CEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTFLNVYHAFKQNH
ESNQWCYDNFVNYRSLVSADNVRQQLSRIMDRFSLPRRSTEFTSRDYYINIRRSLCTGFF
MQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEWL
VKIAPQYYEMGNFPQCEAKRQLERIVAKLETKEYTQY
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaagacatcgtctagatctgggcgatgaccactccaccagtaagaagcgatct
gatgggcgagacagggatagagatcgggaggatcgctctagggaccgagaccgggaccgg
gatagagaccgggagaaggacgtcaagcccccaggtgtctcctacaactgtgtccctctc
ggagcagctatagcacccatcaaacccagcctagccatgcaccagcaaataaatcctttc
accaacctgccacacacaccgcgctactatgagatccttaaaaaaaggttacaactgccg
gtgtgggattataaggaaagcttcaacgacatcatcactcgtcatcaaagttttgtgctt
gttggcgagacggggtccggcaagacaacccagatcccccagtggtgcgtggacctggtg
aaaggtataccggggcccaagcgtgcggtggcctgtacacagcccaggagggtggctgct
atgagcgtggcccagagagtggctgacgagatggacatcatgctgggacaggaggtcggc
tactcgatcagatttgaggactgcagttcggccaaaacaatattgaagtacatgacagac
ggtatgctgctcagggaggccatgaacgacccgctgctggagcgctacggcgtgatcatt
ctggacgaggcccacgagcggaccctggccacggacatcctgatgggggtgctgaaggag
gtggtgcggcagcgctcggacctcaaggtcatcgtgatgagcgccacgctggacgccggg
aagttccaggtgtacttcgacagttgccccctgctgaccatccccgggcgcacccacccc
gtggagatcttctacacccccgagcccgagcgagactacctggaggcggccatccgcacc
gtcatccagatccacatgtgcgaggaggaggagggtgactgcctcctcttcctcacgggg
caagaggagatcgacgaggcgtgcaagcggatcaagcgcgaggtggacgaccttgggcca
gaggtgggggacatcaagatcatccccctgtactccaccctgcccccgcagcagcagcag
aggatctttgagccgccgccgcccaggaagcccggcggtggaatagggagaaaggttgtg
gtgtcgaccaacatcgcagaaacctccctgaccatcgacggtgtcgtgtttgtgatcgac
cccggcttcgccaaacagaaggtgtacaaccctcgtatccgggtggagtcgctgctcgtc
acggccatcagcaaggcctcggcccagcagcgggcggggcgcgccggccgcacgcggcca
gggaagtgcttccgcctctacacggagaaggcctacaaaacagagatgcaggacaacacg
taccctgagatcctgaggtccaacctgggctctgtggttctgcagctcaagaagctgggc
atcgatgacctcgtgcactttgacttcatggacccgccagcccctgagacgctgatgcgg
gccctggagcttctcaactacctggcggcgctcaacgatgacggagacctgactgagctg
ggctccatgatggcggagttccccctggacccccagctggccaagctggtcatcgccagc
tgcgagttcaactgctccaacgagatcctgtccatcaccgccatgctgtcagtcccgcag
tgcttcgtacgacccaccgaggccaagaaggcggccgacgagtccaagatgcgcttcgcc
cacatcgacggagaccacctgaccttcctcaacgtctaccacgccttcaagcagaaccat
gagtccaaccagtggtgctacgacaactttgtcaactaccgctcgctggtgtctgcggac
aacgtgcggcagcagctgtcgcgcatcatggaccgcttcagcctcccgcggcgcagcacc
gagttcaccagccgggactactacatcaacatccgccgctctctctgcaccggcttcttc
atgcaggtggcccatctagagcgcacgggtcattacctcaccgtgaaggacaaccaggtg
gtgcagctgcacccctccaccgtcctggaccacaagcccgagtgggtgctctacaacgag
ttcgtcctcacaaccaagaactacatccgcacgtgtacagacatcaaaccagaatggctg
gtgaagattgcacctcaatactatgaaatgggtaacttcccccaatgtgaagccaagaga
cagctggagcgaatcgttgccaaactagagaccaaggagtacactcagtactga
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