Gadus morhua (Atlantic cod): 115540190
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Entry
115540190 CDS
T10832
Symbol
rfx1
Name
(RefSeq) MHC class II regulatory factor RFX1 isoform X1
KO
K09173
regulatory factor X 1/2/3
Organism
gmh Gadus morhua (Atlantic cod)
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gmh03000
]
115540190 (rfx1)
Transcription factors [BR:
gmh03000
]
Eukaryotic type
Other basic domains
RF-X
115540190 (rfx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BCD_RFX
RFX_DNA_binding
RFX1_trans_act
Laminin_I
Motif
Other DBs
NCBI-GeneID:
115540190
NCBI-ProteinID:
XP_030207128
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Position
3:complement(30650113..30671839)
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AA seq
812 aa
AA seq
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MATSGYSEDLQSQQGNTVTMAMPAAAAPSASKPAHFLSEISPTSVAITTSNQSAAASKSR
QEALCAQVTATMSQKAVLLPGATQQYSATEVQKSNGQSSPQYIIVTVTEGSVQSNDSVSE
SSPPAGVPTQVVQQVQTTSQQRSVLQAVAQNSKRSAAHLNSIQTVHLNQEVDPVYSGQVH
YVDGDSSYTSTPTVRSGGYPYSPLYSQTPPTASSYYDAPPSSESDVSESVGAQPVTMGTG
GGGYLLQGNYVLAGGGGGLGGAQGYGNTNSRAPPATVQWLCENYEGAEGVSLPRCTLYCH
YLLHCQEHKLEPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKSGSPLLRLMD
EQQHLAMRQQPFSQKHRTKPVQKAEGFTNGLSGGAGLQTAGLGDISSQVQQYQQFLDSSR
QLPSLGEVDLGGYGLPEGVQLEHIKAFQSLYREHCEAILDVMINLQFILVETLWKSFWRF
SLSNEPQSLSLHNESEKRLPKACLVVLCKFEPVLNWTKDCDNVLYQTLVEVLIPEVLRPI
PSALTQAIRNFAKGLESWLTNAMMNVPEDMVRIKVACVCAFSQTLRRYTSLNHLAQAARA
VLQNSAQITQMLSDLNRVDFTNVQEQASWVCRCEEDLVQRLEQDFKSTLQQQSSLEQWAA
WLDGVVTRVLKPFHLNPAALPKAAKLFLLNWSFYSSMVIRDLTLRSAASFGSFHLIRLLY
DEYMYYLVEHRVAGARGQTPIAIMGEFASSAKGRSSLDIEKEEEEEDEDEESEEDGGGEL
LLHSGSAPLPPGKEEVMEPPPKMSRGGLFPSD
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atggcaacttccggatactctgaggaccttcagtctcagcagggcaacacagtaaccatg
gcgatgcctgccgccgccgcgccctcggcttcgaagcccgcacacttcctgtctgagatt
tcgccaacttctgtcgctattacgacatctaaccaatcagcagccgcgtccaaatcaaga
caggaagccctttgtgcccaggtcaccgccaccatgtcccagaaggccgtgctgctcccc
ggcgccacgcagcagtacagcgccaccgaggtccagaagagcaacgggcagagctcccct
cagtacattatcgtgaccgtcacagagggctccgtccaatccaatgacagcgtgtcagag
tccagcccccccgctggggtccccacccaggtggtccaacaggtgcagacgacgtcgcag
cagaggtcagtgctgcaggcggtcgctcagaactctaagaggagtgcagctcacctgaac
agcatacagacggttcaccttaaccaagaggtggaccctgtgtactcaggccaggtccac
tatgtggacggggactccagctacacctccacccccactgtacggtcagggggctaccct
tactcgcccctgtactcccagactccgcccaccgcctcgtcctactacgacgccccgccc
tcctctgagtcggacgtctctgagtccgtgggcgcgcaacccgttaccatggggacggga
ggcggaggctacctcctccaggggaactacgtcctggccgggggggggggcgggctgggc
ggagcgcagggatacggaaacaccaactcacgggcgccgcccgccacggtgcagtggctg
tgtgagaactacgagggggcggagggggtgagccttccgcgctgcaccctgtactgccac
tacctgctgcactgccaggagcacaagctggagcccgtcaacgccgcctccttcgggaag
ctgatccgctctgtgttcatgggcctgaggacacgcaggctgggcaccaggggtaactct
aagtaccactactacggcctgcgtatcaagtccggctccccgctgctgaggctgatggac
gagcagcagcacctggccatgaggcagcagccgttcagccagaagcacaggaccaagccg
gtgcagaaggcggagggcttcaccaatgggctgtcggggggggcgggtcttcagacggcc
ggccttggggacatctcatcccaggtgcagcagtaccaacagttcctggattcctcccgc
cagctgcccagcctcggggaggtggaccttgggggctacgggctgcctgagggggtccag
ctggagcacatcaaggccttccagagcctgtaccgggagcactgtgaggccatcctggac
gtcatgatcaacctgcagttcatcctggtggagacgctgtggaaatccttctggaggttc
agcctgagcaacgagccgcagtccctgagcctgcacaacgagtccgagaagcgtctcccc
aaagcctgcctggtggtgctgtgtaagtttgagccggtgctgaactggaccaaagactgt
gacaacgtgctgtaccagacgctggtggaggtcctgatcccagaggtgctgaggcccatc
cccagtgccctgacccaggccatcaggaactttgccaagggtctggagagctggctgacc
aacgccatgatgaacgtccccgaggacatggtccgcatcaaggtggcgtgtgtgtgtgcc
ttctcccagacactgcgtcgctacaccagcctgaaccacctggcgcaggccgcgcgcgct
gtgctgcagaactccgcccagatcacccagatgctctcggacctcaaccgcgtggacttc
accaacgtccaggagcaggcctcctgggtgtgccgctgtgaggaggacctggtccagagg
ctggagcaggacttcaagagcaccctgcagcagcagagctccctggagcagtgggccgcc
tggctggatggcgtggtgacccgcgtgctgaagcccttccacctcaaccccgctgccctg
cccaaggccgccaagctcttcctgctcaactggtccttctacagctccatggtgatcaga
gacctgaccctgcgctccgctgcgtccttcgggtccttccacctgatccgtctgctgtat
gatgagtacatgtactacctggtggagcaccgcgtggccggggcccgcggacagacgccc
atcgccatcatgggagagtttgccagcagtgctaagggccgcagctccctggacatagag
aaagaagaggaagaggaggatgaggatgaggagagtgaggaggacggtggcggcgagctc
ctgctgcactcaggctccgcccccctgccccccgggaaggaggaggtcatggagcccccg
cccaagatgtccagggggggcctgttcccctcagactga
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