Gadus morhua (Atlantic cod): 115540490
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Entry
115540490 CDS
T10832
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1I-like
KO
K04856
voltage-dependent calcium channel T type alpha-1I
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh04010
MAPK signaling pathway
gmh04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
115540490
04020 Calcium signaling pathway
115540490
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
gmh04040
]
115540490
Ion channels [BR:
gmh04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
115540490
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
GRP
TMEM208_SND2
Motif
Other DBs
NCBI-GeneID:
115540490
NCBI-ProteinID:
XP_030207693
LinkDB
All DBs
Position
3:complement(14323595..14467548)
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AA seq
2423 aa
AA seq
DB search
MTIEEEEGLTPASAIVGVTPTPVVFTTTTAWEDGGGGGGGRAFAFSSPRQHSPTPRLSPR
EQEEEEEEGMMEVDWIEEDIVEEEEEEEMGRCDSEVGCDHHDDDDDDDDDDDEGSSDASV
LVVPHPEMVPVVFFCLKQTTFPRSCCISLVSSPWFERVTMMVILLNCVTLGMYQPCENID
CNSQRCKILQAFDAFIYIFFALEMVVKMLALGILGRRCYLGDTWNRLDFFIVMAGIVEYS
LDLQNVNFSAIRTVRVLRPLKAINRVPSMRILVNLLLDTLPMLGNVLLLCFFVFFIFGII
GVQLWAGLLRNRCYPAENFTLNMGVRLPRPYYMADEDDERPFICSLPVDNGIMACTDVPA
RREGGRTCCLDKEDALYRRSLGLSPDPPPVIANGSHGNPGLCVNWNQYYTRCQTGHSNPH
KGAINFDNIAYAWIVIFQVITLEGWVEIMYYVMDAHSFYNFIYFILLIIIGSFFMINLCL
VVIATQFSETKQREHQLMQEQRAQCLSSSTLASQPGDCYEELFQLVCHVLRKARRRTVTL
FNAMRGKPRGFRGPGRGGGGGGGGGGGGGGGGGRGGGGRERRGNRGGADSREMRRPVRPA
SYCPDYNKPDHVTPAEPMALDVAVPVSLGAAGAAGPGDGGPANEAAGEAEIEETDGEGDR
CCGQRKGEKGGGCHPRRRCQGLWYEVRVKLWSIVESKYFNRGIMIAILINTISMGIEHHQ
QPEELTNVLEICNIVFTSMFSLEMILKITAFGSFNYLRNPYNVFDSIIVIISVCEIVGQS
DGGLSVLRTFRLLRVLKLVRFMPALRRQLVVLMKTMDNVATFCMLLMLFIFIFSILGMHI
FGCKFSLRTETGDTVPDRKNFDSLLWAIVTVFQILTQEDWNVVLYNGMAATSPLAALYFV
ALMTFGNYVLFNLLVAILVEGFQAEGDANRSYSDDDRSSFDESEKHNDSLKLSDPKICTL
TPNGHLELGGSLAHASDPRSLVLDSRKSSDISLGRASLDRRSLSLRHGRSSMYHNWGRPL
PPQSAWSRRSSWNSLSRRSCTVGGAPLVGGSLRVRSTRSPYSSSPHSAEHQSLLFHSRPA
IHPPLPPPPPPPPLSRRYSGGARHDRRALSLELPELPPAPASSTLPPALPPPLPPAPPPP
APPPPPPPPQQEPLRRSLGSGTAGSGSVGVGPEHQDCNGKTAHPHHHALILAEVFPQLKA
RKDRADTDEEIDYGLCFRIHKMMEVYKPDWCESRQDWSVYLFSPQNKFRQLCRSIIVHKL
FDYVVLAFIFLNCITVALERPKIMQGSLERLFLTVSNYVFTAIFVTEMTVKVVSMGLYLG
ERAYLRSSWNVLDGFLVFVSLIDIVVSMAGGAKILGVLRVLRLLRTLRPLRVISRAPGLK
LVVETLITSLKPIGNIVLICCAFFIIFGILGVQLFKGKFYYCLGLDVRNITNKSDCQLAN
YRWVHHKYNFDNLGQALMSLFVLASKDGWVNIMYHGLDAVGIDQQPAINNNPWMLLYFIS
FLLIVSFFVLNMFVGVVVENFHKCRQHQEVEEARRREEKRQRRMEKKRRKAQKTPYFASY
GPTRLTVHTLCTSHYLDLTITFIICINVITMSLEHYSQPKSLETGLKYCNYFFTSTFVIE
STLKLVAFGFRRFFKDRWNQLDLAIVLLSVMGIILEEIEINASLPINPTIIRIMRVLRIA
RVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGELVCNADYPCE
GMSRHATFENFGMAFLTLFQVSTGDNWNGIMKDTLRDCPPGQSSSDYGCHAGLQFISPLY
FVSFVLTAQFVLINVVVAVLMKHLDDSNKEAQEDAEMDAEIELELAQGGLCCMTGGLGAV
AGATGASVGGGGSGGGGGGGGGGGGGGGGPGAGMMMMMGQGGPPPGGAGGGPVALRGGGG
GAGGGGGGGGGGGGGSTQYEAQRHRRCRLYSPAQESQWLDSVSLLIKDSLEGELIDNLSG
SVFHHYCPLPTCRDCRAHSQEIRLAEVEQASLMSEQMSDKSSLALPDDLSLDEHSMYQLL
LPDPPPQRGGSSCPSPEEQREVGSRGGSDPVSPDSSGGEEGLRWWLEEGLLPRSAPTSLG
RSGAARHANAGLTETQAGDLGAGGARGVREKEEEEEEEGSALPSFPLPADFFHPAHVAPH
GSPPPDADPSRIDPSRLASPASWASLRSPAVHSRDLCSQHPSHSGSSLATASSDGSLQTT
LEEGLSFSVTLTGHQGLQQPLLCPLPPSQPLSYTSTPPPHTAQAHGSTTLRGRSTALTLQ
ATRGHQRSQSSCGGSISPGGLRQDSMDPSDEEAGTGSGRGGAGSQAFNSEHLSDVLSSLS
LTSLLSPVSLKPPVVKKCNSTGSLNQANLSTRSQDGRQCCGIDAHGYLSNPWEQYRGEQD
GGFSMVNRGSDSQIANTSPRKNR
NT seq
7272 nt
NT seq
+upstream
nt +downstream
nt
atgacgattgaggaggaggagggcctgacaccggcctccgctatcgtcggggtaacgccg
acccctgtcgtcttcacgacgaccacggcatgggaagatggcggcggtggcggcggcggc
cgagccttcgctttctcctctccacgacagcactcccccactccccgcctctctccgagg
gagcaggaggaggaagaggaggaagggatgatggaggtggactggatcgaagaggacata
gtggaggaggaggaggaggaggagatgggccggtgtgacagtgaagtagggtgtgaccac
cacgatgatgatgatgatgatgatgatgatgatgacgaaggaagcagtgatgccagtgtg
ctggtggtcccccaccctgagatggttcccgtggtcttcttctgcctcaagcagaccacc
ttcccccgcagctgctgcatcagcctcgtctccagcccgtggttcgagcgtgtcactatg
atggtgatcctgctgaactgcgtgacgttggggatgtaccagccctgcgagaacatcgac
tgcaactcgcaacgctgcaagattctgcaggccttcgatgcgttcatctacatcttcttt
gcgctggagatggtggtgaagatgctggcactggggattctgggtcgtcgctgttacctg
ggtgacacatggaaccgcttggacttcttcatcgtcatggccggtatcgtggagtactcc
ctggacctgcagaacgttaacttctccgccatcaggacagtgcgggtactgcggccgctc
aaagccatcaacagagtgccaagcatgcgtatcctggtcaacctgttgctggacacgctg
cccatgctaggcaacgtgctgctcctctgcttcttcgtcttcttcatcttcggcatcatc
ggggtgcagctgtgggcggggctcctgaggaaccgctgctaccccgccgagaacttcacc
ctcaacatgggcgtgcgtctcccccggccctactacatggcggacgaggacgacgagcgg
cccttcatctgctcgctgcccgtggacaacggcatcatggcgtgcaccgacgtgccggcg
cggcgcgagggcggccgcacctgctgcctggacaaagaggacgcgctgtaccgccgctcg
ctgggcctcagccccgaccccccgcccgtcatcgccaacggtagccacggcaacccaggg
ctgtgcgtcaactggaaccagtactacacccgctgccagaccggacacagcaacccgcac
aagggcgccatcaactttgacaacatcgcctacgcctggatcgtcatcttccaggtcatt
accctggagggctgggtggagatcatgtactatgtgatggatgctcactccttctacaac
tttatctacttcatcctgctcatcatcatcggctccttcttcatgatcaacctgtgcctg
gtggtcatcgccacccagttctcggagaccaagcagcgggagcaccagctcatgcaggag
cagcgcgcccagtgcctgtcctcctccaccctggccagccagccgggggactgctacgag
gagctcttccagctcgtctgccacgtgctgcgcaaggcgcgccgtcgcaccgtcaccctc
ttcaacgccatgcgggggaagcccagaggcttccgggggccgggcagggggggaggcggg
ggcggagggggaggaggaggagggggaggagggggagggaggggaggcggagggagggag
aggagggggaaccgaggaggagcggacagccgggagatgaggaggcctgtgcgacccgcc
tcctattgcccagactacaacaaacccgaccatgtgaccccagccgagccaatggcactt
gacgtggccgtgcccgtgtcgctcggcgccgctggagctgcggggcccggcgacggcgga
ccggccaatgaggcggcgggggaggcggagatagaggagacggacggggagggggaccga
tgctgcggccagagaaagggggagaaaggcggggggtgccacccccggcggcggtgccag
gggctgtggtacgaggtccgggtgaagctctggagcatcgtggagagcaagtacttcaac
agaggcatcatgatcgccatcctcatcaacaccatcagcatgggcatcgaacaccaccaa
cagccagaggagctgaccaacgtcttggagatctgcaacatcgtcttcaccagtatgttt
tcgctggagatgatcctgaagatcacggcatttggctccttcaactacctcaggaacccc
tacaatgtgtttgacagcatcatcgtcatcatcagcgtgtgtgagatcgtgggccagtcg
gacgggggtctctccgtgctgcggaccttccgcctgctgagggtcctgaagctggtgcgc
ttcatgccggctctccgcaggcagctggtggtcctgatgaagaccatggacaacgtggcc
accttctgcatgctcctcatgctcttcatcttcatcttcagtattctagggatgcatatt
tttggctgtaagttcagcctgaggacggagacgggggacacagtgccggacaggaaaaac
tttgactctttgctctgggccatcgtcaccgtgttccagatcctcacccaggaagactgg
aacgtggtgctgtataacggcatggccgccacctccccgctggccgcgctgtacttcgtc
gctctgatgaccttcgggaactacgtcctcttcaacctgctggtggccatcctggtggaa
ggtttccaggcagagggtgatgctaaccgttcctactctgacgacgaccgctcttcgttc
gacgagagcgagaagcacaacgactccctgaagctctcagaccccaagatatgcaccctg
acacccaacgggcacctggagctggggggctccctggcccacgcctcggacccccgcagc
ctggtgctggactcacgcaagagcagcgacatcagcctgggaagagccagtctggaccgg
aggtccctctccctgcgacacggccgcagttccatgtaccacaattgggggcgccctctc
cctccacagtcggcctggagccgcaggtccagttggaacagcctgagccggaggagctgc
acggtgggcggagctcccctggtgggcgggagcctgcgtgtccgcagcacccgttccccc
tactcctcctccccccactccgccgagcaccaatccctgctcttccactcccggcccgcc
atccacccccctctgccgccgccgccgccgccgcccccgctgtccaggcgctacagcggg
ggggcccgccacgaccgccgcgccctctccctggagctccccgagctgccgcccgccccc
gcttcatccaccctccccccagcgctgcccccgcccttacctccagcgccaccgccgccc
gcaccaccaccaccacctcctcctcctcaacaagaacccctgaggaggagcttggggtcg
ggcacggcgggctccggcagcgtgggcgtggggccggagcaccaggactgcaacggcaag
acggcccacccccaccaccacgccctcatcctggccgaggtgttcccccagctcaaggcc
cgcaaggaccgcgccgacacagacgaggagatcgactacggcctgtgtttccggatccac
aagatgatggaggtgtacaagccagactggtgtgagagccgacaggactggtctgtgtac
ctgttctcccctcaaaacaagttccgtcaactgtgccgttccatcatcgttcacaagctg
tttgactatgtggttctggccttcattttcctcaactgcatcaccgtggctctggagagg
cctaaaatcatgcagggcagcctggagcgtctcttcctaaccgtctcaaactacgtattc
actgccatcttcgtcacggagatgactgtcaaggtggtgtctatggggctctacctgggc
gagcgggcctacctgcgtagcagctggaacgtcctggacggttttctggtgtttgtgtct
ctcatcgacatcgtggtgtccatggcaggaggggccaagatcctgggggtcctcagggtc
ctacgcctgctacggactctaagacccctccgggtgatcagcagggctccaggtctgaag
ctggtggtggagaccctcatcacgtctctgaagcccatcggaaacattgtcctcatttgc
tgcgccttcttcatcatcttcggcatcctgggagtacagctcttcaaggggaagttctac
tactgcctgggccttgatgtgaggaacatcactaataaatcagactgccagttggccaac
taccgctgggttcaccacaagtacaactttgataacctggggcaggctctgatgtccctg
tttgttctggcatcaaaagacggatgggtcaacatcatgtaccacggcctggacgcagtg
ggcattgaccagcagccggcgatcaacaacaacccgtggatgctgctgtacttcatctcc
ttcctgctcatcgtcagcttcttcgtgctcaacatgtttgtgggcgtggtggtggagaac
ttccacaagtgccggcagcaccaggaggtggaggaggcccggcggcgcgaggagaaacgc
cagcggcgcatggagaagaagaggaggaaggcccagaagaccccctacttcgcgtcgtac
ggccccacccgcctgaccgtccacacgctgtgcaccagccactacctggacctgactatc
accttcatcatctgcatcaacgtcatcaccatgtccctggagcactacagccagcccaag
tccctggagacaggactgaagtactgcaactactttttcacctccaccttcgtcatcgaa
tccacgctgaagctggtggcctttggcttccgacgcttcttcaaggacaggtggaaccag
ctcgacctggccatagtgctgctgtctgtgatgggcatcatcctggaggagattgagatc
aatgcctcgctacccatcaaccccaccatcatcaggatcatgagggtgctccggatagca
cgcgtgttgaagctgctcaagatggcgacggggatgagggccctgctcgacacggtggtt
caggctctacctcaggttggtaacctgggcctgctcttcatgttgctgttcttcatctac
gctgcgctgggcgtggagctgtttggggagctagtttgtaacgctgactacccatgtgag
gggatgagtcgccacgccaccttcgagaacttcggcatggccttcctcacgctgttccag
gtctctaccggggacaactggaacggcatcatgaaggacaccctgagggactgccccccc
ggccagtcgagcagcgactacggctgccacgcgggcctgcagttcatctcgccgctgtac
ttcgtgtccttcgtgctcaccgcccagttcgtgctcatcaacgtggtggtggccgtgctc
atgaagcacctggacgactccaacaaggaggcgcaggaggacgccgagatggacgccgag
atcgagctggagctggcgcaggggggcctctgctgcatgaccggggggctgggagccgtc
gccggggcaaccggggcctccgtcggcggaggaggaagcggcggcggcggcggcggcggc
ggcggcggcggaggcggaggaggaggacccggagctgggatgatgatgatgatgggccag
ggtgggcccccgccgggtggggctggcggggggccggtggcgttgagaggaggaggaggc
ggagcaggaggaggaggaggaggaggaggaggtggcgggggaggaagcacacagtacgaa
gcacagaggcaccgcagatgcaggctgtactccccggcgcaggagagccagtggttggac
agtgtgtctctgctgattaaagactccctcgagggcgagctgatagacaacctgtctggc
tccgtcttccaccattactgccccctgccaacctgcagagactgcagagcgcactcccag
gagatccgattggccgaagtggagcaggcgtctctgatgtcagagcagatgtcagacaag
tcttccctggcgctgcctgatgacctcagcctggacgaacacagcatgtaccaactgctg
ctcccagatccgccgccccagaggggcggtagctcctgtcccagcccagaggagcagcgc
gaggtggggtcccggggaggctctgaccccgtcagcccggacagcagtgggggggaggag
ggtctccggtggtggctggaggaagggctcctgccccgctccgccccaacctcgctggga
cgctcaggtgcagcacggcacgccaacgctggcctcacagaaactcaagcgggcgacctg
ggagcaggcggtgccagaggagtcagggagaaggaggaggaggaggaggaggagggctca
gccttgccctccttccccctcccggcggacttcttccacccggcccatgtggccccgcac
ggcagcccgccaccagacgccgacccgagcaggatagacccgtcaaggctggcctccccc
gcctcgtgggcctccctccgctccccggccgtccacagcagggacctctgttcccagcac
ccctcccacagcggctcctccctggctacagccagctccgacggcagcctgcagaccacc
ctggaggaggggctgagcttcagcgtcaccctgacaggacaccagggcctccagcagccc
ctactctgccctttgccccccagccagcccctctcctacaccagtacacccccaccgcac
accgcccaggcccatggctcgaccacactgcggggtcgcagcactgcgctgaccctccag
gccaccagggggcaccagaggagccagagcagctgtgggggcagcatcagtccagggggc
ctccgccaggactccatggatccctcggacgaggaggcgggcacggggtctgggcgtggc
ggtgccggcagccaggcgttcaacagcgagcacctctcagatgtgctgagcagcctttcg
ctgacgtcgctgctctctccggtctctctgaagccccctgtggtgaagaagtgtaacagc
accggctccctcaatcaggccaacctgtccacacggagccaagatggccgccagtgttgc
ggcatcgatgcccatggctacttgtccaacccctgggaacagtaccggggagagcaagat
ggcggatttagcatggtgaacagaggcagcgacagccaaatagcgaacacaagccccaga
aaaaacagatga
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integrated database retrieval system
