Gadus morhua (Atlantic cod): 115540511
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Entry
115540511 CDS
T10832
Name
(RefSeq) protocadherin-18-like isoform X1
KO
K16499
protocadherin delta 2
Organism
gmh Gadus morhua (Atlantic cod)
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
gmh04515
]
115540511
Cell adhesion molecules [BR:
gmh04515
]
Cadherins
Protocadherins
115540511
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
115540511
NCBI-ProteinID:
XP_030207743
Ensembl:
ENSGMOG00000003211
LinkDB
All DBs
Position
3:28030396..28040875
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AA seq
1270 aa
AA seq
DB search
MEGLCSTMWKVIVLLAIASLASGKTLKYQIYEEQKAGTVIARLKDDVADVLAKLPNTVSL
RFRAMQRGSMSLLAVREADGEISIKTKIDREKLCEKNLNCSIQFDVLTLPTEHLQLFHVE
VEVLDINDNTPQFARSIIPIEISESAAVGARIPLDSATDPDVGENSLYSYALEPNNFFKI
DIQSRTDGAKYAELVVLKELDREVRAGYELQYTASDKGVPARTGSTLLRISVADSNDNSP
IFDKSSYIINLPENAPVGTLLINLNATDADEGTNGKIVYSFSSHVSGKILDTFKINPDSG
HMTLIRRVDYETASSYDIDVQAQDMGPNSMPAHCKILVKVGDVNDNKPDISINLMSSQGK
EDAAYLSEASPLDTFVALVRVEDMDSGLNGEIVCKLHGQGYFKLQKTYENNYLILTNVSL
DREKRSEFSLTVVAEDRGTPSLSTIKHFTVHVTDENDNPPRFEKGRYEIFKSENNAPGAY
LYSLVATDADLNANGQVSYSIVENNIHGSSISTYVTIDPSNGAIYALRTFDREDVSHISF
VVQAKDAGSPALSSNATVSLNILDENDNPPAIVVPQLWNFTADVPVSKFTEAGHLVTALR
VTDRDTGVNAELICSIAGGNDEGFFIMDPRTCEVHANASLEGFPRERAELAVLVRDQGSE
SLSAKAVLKITLYENMENHVQVMDPGESSFDASLIIIISLGAICALLLVIMVAFAARCSR
EKKETRNSYNCRVAESNHQHHPKKPSRQIHKGDITLVPTVNGTLPIRAHHRSPLTTPPLD
RAPMGSRQSHHSRQSLNSLVTISSNHIPESFALELTHTTPPVEQVSQLLSMLHQGQYQPR
PSFRGNKYSRSYRYALQDMDKFSLKDSGRGDSEAGDSDYDMGRESPVDRLILGEGFSDLL
HLEMHHRLHPAMRLCTDECRVLGHSDQCWMPPLSSPASSDYRNNMYIPGEESQAQPQSHL
LHQQQQQQHQHHLLHHQQQVADDDQASLESERRKSFSTFGKESGSEEEVSPGVAVGVAMG
GAGSDACGAMAPGMGGSLLTEMNHVFQRLLPPNGNNAYSDCGEPLALAPPSSSAAAAAAT
AVGPAPGPPPVNSSSTSERGTACGSSGGNHGNSNAMPQENRKGLLPGGKVPVYPPGVAAW
AANAHYLTNPGNGNHAAAPCLPPPSSTCPSASSPSSNNNNAPNNGQPPHLKWLPAMEEIP
ENYEEDEFDGVFQQCNPGVAKRVAAADGPREGGGCGGGGGGNGGGNGGGMDASELVNEIN
KLLQDVRQGS
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atggaaggactttgtagtacgatgtggaaagttatagtgcttttggccatcgcgtccctc
gcgagcggcaagacgctgaaataccagatctatgaagaacaaaaagcaggcacagtgatc
gcccgtttgaaagacgacgttgccgatgtcttggccaaacttcccaacacggtgtctctg
cgcttcagggcgatgcagcgagggagcatgtctttgctggcggtccgcgaggcggacgga
gagatcagcatcaagaccaaaatcgaccgcgagaaactttgcgaaaagaaccttaactgt
tccatccaattcgacgtgctgaccctcccaaccgagcacctgcagctcttccacgtcgag
gtggaggtgttggatatcaacgacaacacgccccagttcgcccgctccattatccccatc
gagatatccgagagcgcggcggtgggagcgcgcattcccctggacagcgccaccgacccg
gacgttggggaaaactccctgtacagttacgcgttggaaccaaacaatttcttcaagatc
gacatccagtccaggaccgacggcgccaaatacgcggagttggtggtgctgaaggaactg
gatcgggaggtgcgggcgggttacgaactccagtacaccgcgtctgataagggcgttccc
gcaagaacaggttcgaccctcctcagaatcagtgttgcggactccaatgataacagtcct
atttttgacaagtcgtcatacatcattaacttacccgaaaacgcacctgttggcacacta
ctgatcaacctaaacgccaccgatgcggacgaggggaccaacggcaagatagtgtactcc
ttcagcagtcacgtgtctggtaaaatattagacacgtttaaaatcaacccagacagcggt
cacatgaccctgatcagacgcgtggactatgagaccgcgagctcgtatgacatcgacgtg
caagcgcaagacatggggccgaactccatgcctgcgcactgcaagatcctggtcaaggtg
ggagacgtgaacgacaacaagccagacatcagcatcaacctcatgtcctcccaggggaag
gaagacgcggcctacttatccgaggcctcccctttggatacctttgtggctctggtgcgc
gtggaggacatggactcgggactaaacggggagatagtgtgcaaactgcacggccagggc
tacttcaaactgcagaagacctacgagaacaactacctgatcctcaccaacgtgtccctg
gaccgcgagaagaggtcagagttcagcctgacggtggtggcggaggaccggggaaccccc
agcctctccaccatcaagcacttcacggtgcacgtcaccgacgagaacgacaacccgccg
cgcttcgagaagggccgctacgagatcttcaagtcggagaacaacgcgcccggggcgtac
ctctactcgctggtggccaccgacgccgacctcaatgccaacggccaggtgagctactcc
atcgtggagaacaacatccacggcagctccatctccacctacgtcaccatcgacccgtcc
aacggcgccatctacgccctgcgcaccttcgaccgcgaggacgtcagccacatctccttc
gtggtgcaggccaaggacgccggctccccggcgctctccagcaacgccaccgtgtccctc
aacatcctggacgagaacgacaacccgcccgccatcgtggtcccgcagctgtggaacttc
accgccgacgtgcccgtgtcaaagttcaccgaggcgggccacctggtcaccgccctgagg
gtcaccgaccgcgacacgggggtcaacgccgagctcatctgctccatcgccgggggcaac
gacgagggcttcttcatcatggacccgcgcacgtgcgaggtgcacgccaacgccagcctg
gagggcttcccccgcgagagggcggagctggccgtgttggtgcgggaccagggcagcgag
agcctgagcgccaaggccgtgctgaagatcacgctgtacgagaacatggagaaccacgtg
caggtgatggacccgggggagtcctccttcgacgcctccctcatcatcatcatctcgctg
ggcgccatctgcgcgctgctgctggtcatcatggtggcgttcgccgcccgctgcagccgg
gagaagaaggagacgaggaactcgtacaactgccgcgtggcggagtcaaaccaccagcac
caccccaagaagccctcgcggcagatccacaagggggacatcaccctggtgcccaccgtc
aacggcaccctgccgatccgggcgcaccatcgctcgcctctgaccacgccccccttggac
cgagcgccaatgggaagcaggcagagtcaccacagcaggcaatcgttgaacagcctggtg
acgatctcgtccaatcacatcccagagagctttgcgttggagctgacccacaccacgccc
ccagtggagcaagtctcacagcttctgtccatgctccatcagggccagtaccagcccaga
cccagtttccgtggcaacaaatactcccgcagctacagatatgcactacaggacatggac
aagttcagcctgaaggacagtggtcgtggggacagcgaggccggggacagcgactatgac
atgggccgcgagtcccccgtggacaggctgatactgggagagggcttctctgacctgctg
caccttgagatgcaccacaggctccacccagctatgagactgtgcaccgatgagtgtcgt
gtactgggccactcagaccagtgctggatgccccctctgtcgtccccggcgtcctccgac
taccgcaacaacatgtacatcccaggggaggagtctcaggcgcagccccagtcccacctc
ctccaccagcagcagcagcagcagcatcagcaccatctcctccaccaccagcagcaggtt
gccgacgacgaccaggcctccctggaatccgagcgccgcaagagcttctccaccttcggc
aaggagtcgggcagcgaggaggaggtctcgccgggcgtggccgtgggcgtggccatgggc
ggagcaggaagtgatgcgtgcggggcgatggcgccgggaatgggcggttccctgctgacg
gaaatgaaccacgtgttccagcgcctgctgccccccaacgggaacaacgcctacagcgac
tgcggcgagcccctcgccttggccccgccctcctcctcagccgcagccgccgccgccacc
gccgtcggccccgcccccgggccgccgcccgtcaactcctcgtccacctcggagcgaggc
accgcctgcgggagcagcggcggtaaccacggcaacagcaacgccatgccccaggagaac
cgaaagggcctgttgccgggcgggaaggttccggtctacccccccggggtggcggcctgg
gcggccaacgcccactacctgacgaaccccggcaacggtaaccacgcggccgccccctgt
ttgcccccgccgtcctccacctgcccctccgcctcctcgccctcctccaacaacaacaac
gcccccaacaacggacagcccccgcacctaaaatggctgccggcgatggaggagatcccc
gagaactacgaggaggacgagttcgacggggtcttccagcagtgcaaccccggggtcgct
aagcgcgtcgccgcggccgacgggccccgtgagggcggcggatgcggcggcggcggcggc
ggcaacggtggcggcaacggcggcggcatggacgccagcgagctggtcaacgagatcaac
aagctgctgcaggacgttcgccagggctcctga
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