Gadus morhua (Atlantic cod): 115540536
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Entry
115540536 CDS
T10832
Symbol
smarce1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X1
KO
K11651
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03082
ATP-dependent chromatin remodeling
Brite
Transcription machinery [BR:
gmh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
115540536 (smarce1)
Chromosome and associated proteins [BR:
gmh03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
115540536 (smarce1)
PBAF complex
115540536 (smarce1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
GCN5L1
HMG_WDHD1
Pcf11_helical
Motif
Other DBs
NCBI-GeneID:
115540536
NCBI-ProteinID:
XP_030207798
Ensembl:
ENSGMOG00000012950
LinkDB
All DBs
Position
3:26806926..26819436
Genome browser
AA seq
437 aa
AA seq
DB search
MSKRPYAPPPPPAPTTQIPNTAGFVGYNPYSHLAYNNYRLGGSQGTNGRVTNTSGINIPK
PPKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQDYLNDYEA
EKIEYNESMKAYHNSPAYLAYVTAKSRAEAALEEESRQRQSRQDKGEPYMSIQPADDPDD
YDDGFTVKHSATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRKL
EAELLQIEDRHQDKKRKFIEATESFSSELKRLCCLKVEVDMEKISAEISAAEEASRRRLA
ERDKEAGAEPGAREAPTCVLAEEEKHVCATHGGGKPPQNAADDDDGGGGADGVKDGEEAG
PGAADATVKPEAESQPGGGGEEAASEDKDSVPEGAMEEGTSDSNTGSETTSAQTEDAPPS
EPVPEGPGPLPRGRAAH
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagaggccctatgccccgccccctccaccagcccccacaactcaaatccccaac
actgctgggtttgtgggctacaacccatacagccacctggcctacaacaactacaggctc
ggagggagccaaggcaccaacggtcgggtaacgaatacctcgggaataaacatcccaaag
ccgcccaagccccctgacaagccattgatgccctacatgaggtacagccgcaaggtttgg
gatcaagtgaaagcctccaaccccgatctgaagctctgggaaattgggaagataatcggt
ggcatgtggagagacctcactgatgaggagaaacaagattatctgaacgactacgaagca
gagaagatcgagtacaacgagagcatgaaggcgtaccacaactccccggcctacctggcc
tacgtcacggccaagagccgggcggaggcggcgctggaggaggagagccggcagaggcag
tcgcggcaggacaaaggggagccctacatgagcatccagccagccgacgacccagacgac
tacgacgacggcttcacggtgaagcactcggccaccgcccgcttccagcgcaaccaccgg
ctgatcagcgagatcctgagcgagagcgtggtgccggacgtgcgctcggtggtgaccacg
gcccgcatgcaggtgctgaagcggcaggtccagtcgctcatggtgcaccagaggaagctg
gaggcggagctactgcagatcgaggaccggcaccaggacaagaagaggaaattcatcgag
gccaccgagtccttcagcagcgagttgaaaaggctgtgctgtctgaaggtcgaggtcgac
atggagaagatctccgctgagatctcggcggcggaggaggcgtcccgccggcgcctggcg
gagcgggacaaggaggcgggggcggagcctggcgcgcgggaggcccccacctgcgtgctg
gcggaggaggagaagcacgtctgcgccacgcacggcgggggcaagccgccgcagaacgct
gcagatgacgacgacggcggcggcggcgccgacggcgtcaaggacggagaggaggcgggg
cccggcgccgcggacgccacggtgaagccggaggcggagtcccagcccggcggcggcggc
gaggaggcggcctcggaggacaaggacagcgtccccgagggagccatggaggagggcacc
agcgacagcaacacgggctccgagaccacctcggcccagacggaggacgccccgcccagc
gagccggtccccgagggcccgggtcccctcccgcggggccgggcggcccactga
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