Gadus morhua (Atlantic cod): 115540611
Help
Entry
115540611 CDS
T10832
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115540611
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmh03019
]
115540611
Messenger RNA biogenesis [BR:
gmh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
115540611
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
115540611
NCBI-ProteinID:
XP_030207913
Ensembl:
ENSGMOG00000004913
LinkDB
All DBs
Position
3:complement(12839900..12848895)
Genome browser
AA seq
558 aa
AA seq
DB search
MSAEEADKTNTTDASGGDEEEEWLYGDEGEGKEEDEEAKLNAAVSVVSDAPISTTEDATA
PATGNGVAPEPAGEAADEDSDSDSDDDDDDVRVTIGDIKTGAPQYTPYGAPPVNLNIKTT
GSRPYGQVNAKLKGVDMDAPGNINGVPVLEADVESFEEKPWRKPGADLSDYFNYGFNEDT
WKAYCEKQKRLRMGLEVSTVGSTTSKITVQQGRTGNDKDISSLSVHTSKPDFSSPVNMYK
PPPTQVTRISTPQWTAPPGQDMSYYTKPSGTIDVIGGQTATISRVEGRRRHNLEGNNIQV
ISEHSSSEADSTPAKMPPFFPPGPLPPNMPPPPFLAPPPNVGTAPPLIPPPRMPITVPPP
GFQHPPTGPPPSLMPTMDGHTGGYDGRSIQPYPFPQGAYPPPMPGGPAPSWPPMMDNSKQ
WDFYPRREEKREKERERPRERPHEREREREHSPSAMSYTSDEERFRFREYPPERGGYGER
HRERSSREKEDRHRERRHREKEEGRHKTSRSSSSRRRHDSEEGDSHRRHKHKKSKRSKEG
KEPGEETGGDQENQETME
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctgaagaagcggacaaaaccaacaccacagatgctagtggcggagatgaagag
gaggaatggctctacggagatgaaggcgagggcaaggaagaggatgaagaagccaaactg
aacgctgcagtaagtgttgtcagtgatgctccaatctcgaccacggaggatgccactgcc
cccgctacaggaaatggagtggcgcctgagccggcgggcgaggcagcggacgaggacagc
gatagtgacagtgacgatgacgacgatgatgtgcgagtcaccattggagacatcaaaacc
ggggcgccccagtacacaccatacggagcccctccggtcaaccttaacatcaagacaacg
ggctccaggccatacggacaagtgaacgctaagctaaagggagtggacatggacgctcct
ggcaacataaacggagttccagtgctggaggcagacgtggagtccttcgaggagaaaccg
tggagaaagccaggtgcggacctgtcggactactttaactacggcttcaacgaggacacg
tggaaggcctactgtgagaagcagaagaggctgcgcatgggccttgaggtctccactgtg
ggctccaccaccagcaagatcacagtccagcagggtagaacggggaacgataaagacata
tccagcctgtcagtccacacttccaagccagacttctcgtccccggtcaacatgtacaag
ccccccccgacccaggtcaccaggatctcaaccccccagtggaccgccccgcctggtcag
gacatgtcctactatacgaagccgagtggaacaatagatgttattggtggacagactgcc
accatcagcagggtggaaggacggcgcagacacaacctggaaggaaataatatccaggtc
atctcggaacactcttcgtcggaggccgactcgaccccggcgaagatgccccccttcttc
cccccggggccgctgccccccaacatgcctcctccccccttcctcgcacccccccccaac
gtcggcactgcaccaccgctcatacccccacccaggatgcccatcacagtacctcctcct
ggattccaacacccgcctactggccccccgccctccctcatgcccactatggacggccac
acgggcggctacgacgggcgctctatccagccatatccctttcctcaaggtgcgtaccct
ccacccatgccagggggtccggctccgtcttggcctcccatgatggacaactcgaagcag
tgggacttctaccctcgtagggaagagaagcgggagaaggagcgggagagacccagggaa
aggccccatgagcgggagagggagagggagcacagtccatctgccatgagctacaccagc
gacgaggagcggttccgtttccgtgagtaccctcccgagcgcggcggctatggggagcgc
catcgggagcgctccagccgagagaaggaggaccggcacagagagaggagacaccgtgag
aaggaggaaggacgccacaagacttcacgcagcagcagcagcaggaggaggcacgacagc
gaggagggcgacagccaccgccgacacaaacacaaaaagagcaagaggagcaaggagggc
aaggagccaggcgaggagaccggcggggaccaggagaaccaggagaccatggagtga
DBGET
integrated database retrieval system
