KEGG   Gadus morhua (Atlantic cod): 115540619
Entry
115540619         CDS       T10832                                 
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
  KO
K07573  exosome complex component CSL4
Organism
gmh  Gadus morhua (Atlantic cod)
Pathway
gmh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gmh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    115540619 (exosc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gmh03019]
    115540619 (exosc1)
Messenger RNA biogenesis [BR:gmh03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     115540619 (exosc1)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     115540619 (exosc1)
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1
Other DBs
NCBI-GeneID: 115540619
NCBI-ProteinID: XP_030207931
Ensembl: ENSGMOG00000008993
LinkDB
Position
3:21711255..21715157
AA seq 194 aa
MSPMKLCVPGDKLCSTDDCIPGTGVYMRHGYIFSSLAGYVLKKNEGEELPVISVVRETET
QLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRKEDVRATEKDKVETYKS
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGAQMVPINWCEMQCPRTHTKE
FRKVARVQPEYLHA
NT seq 585 nt   +upstreamnt  +downstreamnt
atgtcgcccatgaagctgtgtgttccaggtgacaagctttgcagcacagatgactgcata
cccggtacaggcgtgtacatgcgtcacggttacatattttcttcactagctggctatgtg
ctgaaaaaaaacgaaggcgaagagttacctgtgatctcagtggtgagggaaacagaaacg
cagctactgccagacgtaggagccatagtcacctgtaaggtaaccagcatcaatccccgg
ttcgcaaaggttcatatactctacgtgggctccacaccactgaaagaccgcttcagaggc
acaatcagaaaagaagatgtgcgcgcaacagaaaaagataaggtggagacttacaaaagc
ttcagacctggagacattgtgctggccaaagtgatctcactgggggatgttcagtccaac
tatctgttgacgacagcagagaatgaactgggcgtggttgtggcacacagtgaagcaggt
gcccagatggtacccatcaactggtgtgagatgcagtgtccacgcacgcacactaaagag
ttcagaaaagtagcgcgggtgcagccagagtatctgcacgcatga

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