Gadus morhua (Atlantic cod): 115540619
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Entry
115540619 CDS
T10832
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115540619 (exosc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmh03019
]
115540619 (exosc1)
Messenger RNA biogenesis [BR:
gmh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
115540619 (exosc1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
115540619 (exosc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
115540619
NCBI-ProteinID:
XP_030207931
Ensembl:
ENSGMOG00000008993
LinkDB
All DBs
Position
3:21711255..21715157
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AA seq
194 aa
AA seq
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MSPMKLCVPGDKLCSTDDCIPGTGVYMRHGYIFSSLAGYVLKKNEGEELPVISVVRETET
QLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRKEDVRATEKDKVETYKS
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGAQMVPINWCEMQCPRTHTKE
FRKVARVQPEYLHA
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccatgaagctgtgtgttccaggtgacaagctttgcagcacagatgactgcata
cccggtacaggcgtgtacatgcgtcacggttacatattttcttcactagctggctatgtg
ctgaaaaaaaacgaaggcgaagagttacctgtgatctcagtggtgagggaaacagaaacg
cagctactgccagacgtaggagccatagtcacctgtaaggtaaccagcatcaatccccgg
ttcgcaaaggttcatatactctacgtgggctccacaccactgaaagaccgcttcagaggc
acaatcagaaaagaagatgtgcgcgcaacagaaaaagataaggtggagacttacaaaagc
ttcagacctggagacattgtgctggccaaagtgatctcactgggggatgttcagtccaac
tatctgttgacgacagcagagaatgaactgggcgtggttgtggcacacagtgaagcaggt
gcccagatggtacccatcaactggtgtgagatgcagtgtccacgcacgcacactaaagag
ttcagaaaagtagcgcgggtgcagccagagtatctgcacgcatga
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