KEGG T10832: 115540741

Gadus morhua (Atlantic cod): 115540741

Entry

115540741         CDS       T10832

Name

(RefSeq) heterogeneous nuclear ribonucleoprotein A1-like isoform X1

K12741

heterogeneous nuclear ribonucleoprotein A1/A3

Organism

gmh Gadus morhua (Atlantic cod)

Pathway

gmh03040

Spliceosome

Brite

KEGG Orthology (KO) [BR:gmh00001]
09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115540741
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gmh03019]
    115540741
   03041 Spliceosome [BR:gmh03041]
    115540741
Messenger RNA biogenesis [BR:gmh03019]
Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     115540741
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     115540741
Spliceosome [BR:gmh03041]
Common components
  Common spliceosomal components
   hnRNP proteins
    115540741

SSDB

Motif

Pfam:

RRM_1 RRM_7 RRM_PARP14_3 Nup35_RRM_2 NID RRM_3

Other DBs

NCBI-GeneID:

115540741

NCBI-ProteinID:

XP_030208146

Ensembl:

ENSGMOG00000017950

LinkDB

Position

1:8621643..8625529

AA seq 405 aa
MSKDHDQGAREPEQLRKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDTGSKRSRGFG
FVTYSTVEEVDAGMDARPHKVDGRMVEPKRAVSREDSNKPGAHVTVKKIFVGGIKEDTEE
AQLRDYFSQFGKIDLVEIMTDRNTGKRRGFAFVTFDDHDSVDRIVIQKYHTVNCHNCEVR
KALSKQEMQNTGMSRPGNFNRGGGYGGNDFGRDGYFGDRGGRGGGYGGDNYNNGYGGGDG
DNLGAADVLNTSVAGYGGGGYGGGGGGNRGYGGGQGYGNQGGGGGGGYGGNGYDGYNNGN
GNGNYGGGGGDSSVGNYGSGGGGGGGGSSGGNGYNDFGNYNNQSSNYGPMKGTNFGGGGG
GGSGGGGGGGRNSGPYGGGYGGSTGGGGGGGYGGGGGGGGSGRRF

NT seq 1218 nt +upstreamnt +downstreamnt
atgtcgaaagatcatgatcaaggcgcacgggaaccggagcagctccgcaagctcttcatc
ggaggactgagttttgagaccacagacgagagcttgcgagcccattttgaacaatggggt
acactcaccgactgcgtggtgatgagagatactggcagcaaaaggtccaggggattcggc
tttgtgacctactccactgtggaagaagtggatgctggcatggatgcacggcctcataag
gttgatggcaggatggtagagcccaagagagcggtttccagagaggactccaataaaccc
ggtgcccacgtaacggtcaagaagattttcgttggcggcatcaaagaagacacagaggaa
gcacagctgcgagactacttcagtcagtttggaaagattgacttggttgaaattatgacc
gaccgcaacacgggcaagaggcgaggctttgcattcgttacgtttgatgaccacgattcc
gtggacaggattgtcattcagaaataccacacagtcaactgccacaattgtgaggtgagg
aaggccctctcgaagcaagagatgcagaatacgggcatgagtcgccctggtaacttcaac
agaggcggtggctatggaggtaatgattttggccgcgatggatacttcggtgaccgtggt
ggaagaggtggaggatacggtggtgacaattacaacaatggctacggcgggggagatggt
gataacctaggcgctgctgatgtactcaatacatctgttgcaggttacggaggtggtgga
tacggaggtggtggcggtgggaaccgtggctatggagggggacaaggctatggcaaccag
ggtggcggtggcggaggcggttatggtggaaacggctacgatggctacaacaacggtaat
ggaaatggaaactacggcggtggtggtggagattcctctgtaggtaactacgggagtgga
ggaggaggcggcggcggtggcagcagtggaggcaacggctacaatgattttggcaactac
aacaaccagtcgtctaactacggccccatgaaaggaactaactttggaggtggaggcggt
ggtggcagtggaggaggaggaggtggaggacggaacagtgggccttatggtggtggctat
gggggtagcactggcggaggcggtggcggcggatacggtggtggtggtggtggcggcgga
tctggcagacggttttaa

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