Gadus morhua (Atlantic cod): 115540888
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Entry
115540888 CDS
T10832
Name
(RefSeq) VPS10 domain-containing receptor SorCS3-like isoform X1
KO
K27083
VPS10 domain-containing receptor SorCS3
Organism
gmh Gadus morhua (Atlantic cod)
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gmh04131
]
115540888
Membrane trafficking [BR:
gmh04131
]
Endocytosis
Others
Others
115540888
Endosome - Lysosome transport
115540888
Endosome - Golgi transport
115540888
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
Motif
Other DBs
NCBI-GeneID:
115540888
NCBI-ProteinID:
XP_030208361
Ensembl:
ENSGMOG00000024381
LinkDB
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Position
3:23823214..23959908
Genome browser
AA seq
1272 aa
AA seq
DB search
MGTGGADVRPGLHLSFGIWVMIAAHCLHHAKAEISCASCPLPVQLHREELPLVARGGGGV
GGGRATPGPSPLHQIRLELLTQTAVTDRITGLDEARKHARFSTDVPRSPEDATLDFGVGA
EEDAALPRRSRASDQTFGGDFNEDPPEKRASFTALRRARRSGPEVPEYRKSSREARDGLS
VDSFEGRGGNSGPKLDGQRSGRPEVKYSRDEGRGTGRQDEPKLASSTYALTGDSAHNHAV
VYWSGKNSSVILILTKLYDFHIGSVTESTLWRSTDYGSTYERMNDKVGSKTVLSYLYICP
TNKRKIMVLTDPEFESSVLVSSDEGASFQKYRLSFYILSLLFHPTQEDWALAYSHDQKLY
SSMDFGRKWQLVHEHVTPSRFYWSVSGLDKELDLVHMEAHTPDGNVQYVTCRAQMCTESN
RNYPFPGYVDISSLVVQDDYMFIQVPTSGRAKYYVSYKRDPFLQIKLPKYSLPKDLHIVS
TDEKQVFAAVQEWNQNDTYNLYLSDTRGIYFTLAMENVKTTRGIGGNQMLDLYEVAGVTG
MLIANRRHDSQVRTYITYNKGREWRLLQAPSTDIAGNDIHCILPFCSLHLQLQTSENPYL
SGTISTKGSAPGIIVATGNIGAELSYNNVGMFISSDAGNSWRQIFEEEHNVWFLDKGGAL
VAVKQPSVPTRHLWISFDEGRQWTRHSFSMVPLFVDGVLVEAGAENQIMTFFGHFSHRSE
WQLIKIDYKSVFSRRCTEEDYQTWHLNNQGEPCVMGQKQIYMKRRPGNYCMLGRDYSRVL
STESCICKAHDFECDYGYERRGDGNCRPAFWFNPYTLSKSCSQGQNYFNSTGYRKVVSNN
CTKGVKEMYTPRRQQCPSRAPRGLSLTTKDDKLTAHLGTNVSFKVHLDEGDSMRTNIQLD
FGDGTAVSYSNLSWTEEGIRHMYKAAGIFRVTALAENSLGFDTTTLHLHVTCPVEHVQLL
APYVAIGHQEVNITAVVWPGHSRTVTYFWWLDNNTEPVITLEGSISYTFLTEGMHTVTVQ
VSSSNAILQDTRTVAVQEFFKSLLLSFSPNLDEFNPDIPEWRLDVGRVIKKSILQVLDFP
EEQLLVAVFPGVPTAAELFLLPNRNQSHSKKNHEEELERVSKIIVSALNQNLVEFELKPG
IRVIVYFTQLTLARPKRVLSNNLTAPLVDSSPRHSSSAMLMLLSVVLLGLAVFLIYKFKR
KIPWINIYAEVNQEKEQEMIGSAGQGDSTPKITLSEFTTSKELMEKELDARIKRGVGNSC
ENTREIPNCTSV
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atggggacagggggtgcagacgtccgcccagggctgcacttgtctttcggtatctgggtg
atgatagccgctcattgcctccaccacgcaaaggcagaaataagttgcgcgtcttgcccg
ttgccggttcaacttcaccgggaggaattaccgctcgtcgcgcgcggtggaggcggcgtt
ggcggcggcagagcgactccgggtccgagtcctctgcatcagatccgactggagctccta
acgcagaccgccgtgaccgatcgaattactggattagacgaagcgcgcaaacacgctcgg
ttttcaacagatgttccccggagccccgaagacgcaactttggactttggagttggcgcg
gaggaggacgccgccttgccgcgtcgctcccgcgcatcggaccaaactttcggcggtgat
ttcaacgaggatccgccggagaaacgcgcctcgtttacagcgctccggagagcaaggagg
agcggcccggaggtccccgagtaccgcaagagcagccgggaagctagggatggtttgagt
gtggattctttcgagggaagaggaggaaattctgggccaaagttggacggacagagatcc
gggaggccagaagtcaagtatagccgagacgagggcaggggcaccgggcggcaggatgag
ccgaagctggccagcagcacttacgcactgacgggggactctgcgcacaaccacgccgtg
gtttactggtcagggaagaacagcagcgtgattctgatcctgaccaagctgtatgacttc
cacattggcagtgtcacggagagcactctgtggaggtctactgactacggatccacctat
gagagaatgaatgacaaagtaggatccaagacagtgctgagctacctctacatctgtccg
actaacaagagaaagatcatggtgctgaccgacccggagtttgagagcagcgttctggtg
agctctgatgagggggccagtttccagaagtaccgcctcagcttctatatcctcagcctc
ctcttccatcccacccaggaggactgggccttagcctacagccacgaccagaagctgtac
agctccatggactttgggaggaaatggcagcttgttcacgaacacgtaacacctagcagg
ttctactggtctgtgtcaggtcttgataaggagctggatcttgtccacatggaagctcac
actcctgatggaaatgttcagtatgtcacatgcagggctcagatgtgcacggagagcaac
aggaactaccccttcccgggatacgttgacatcagctccctggtggtccaggacgactac
atgttcatccaggttcctacatccggccgggccaaatactacgtgtcctataagagagat
ccgttcctacagatcaaacttcccaaatactccctgcctaaggatttgcacattgtcagc
actgatgagaagcaggtgtttgctgcggtgcaggagtggaaccagaatgacacctataac
ctttacctgtctgacaccagagggatctacttcaccctggccatggagaatgtcaagacc
acccgtggaatcggtggaaaccagatgctggacctgtatgaggtggctggtgtgaccggc
atgctgatcgcgaacaggaggcacgacagccaggtgaggacctacatcacctacaacaaa
ggacgggagtggaggcttctgcaggcgccttccacggacatcgccggaaatgacatccat
tgcatactgcctttctgctcacttcatctgcaactgcaaacgtcagagaacccctacttg
tcaggaacaatctccaccaaaggctcggcgccgggaattatagttgccacaggaaatatc
ggggcagagttgtcctacaacaacgtcggtatgtttatttcatccgatgcgggcaacagc
tggagacagatcttcgaagaggagcataacgtgtggttcctagacaaaggaggagccctc
gtggcggtgaaacagccatcagtaccaacgagacacttatggatcagcttcgacgagggc
agacagtggacccgtcacagcttctccatggtgccgctgtttgtggacggcgtgctggtg
gaggccggggcggagaaccagatcatgacattctttggccacttcagccaccggtctgag
tggcagctcattaaaatcgactacaagtcggtcttcagcaggagatgtactgaggaagat
taccaaacttggcacctgaataatcagggagagccgtgcgtgatggggcaaaaacagatc
tacatgaaacgcaggcctgggaactactgtatgctgggaagggattactccagagttctc
tctacggagtcttgtatctgcaaagcacacgactttgaatgtgattatggatacgagcgg
aggggcgacgggaactgcaggcctgccttctggttcaacccttacaccctctccaagagt
tgtagccaggggcagaactacttcaacagcactggataccgtaaggtggtgtccaacaac
tgcaccaagggggtgaaggagatgtacactcccaggaggcagcagtgtccgagcagagcc
ccccggggtctgtccctgaccaccaaggacgacaagctcaccgcacacctggggaccaac
gtctccttcaaggtgcacctggacgagggggactccatgaggaccaacatccagctggac
ttcggcgacggcacggcggtttcgtactccaacctgagctggaccgaggagggcatccgg
cacatgtacaaggcggccggcatattccgcgtcacggctctggcggagaactcgctggga
ttcgacaccacgaccctccacctgcacgtcacgtgtccagtggagcatgtgcagctgctg
gcgccctacgtggccatcggccaccaggaggtgaacatcacggccgtggtctggcccggc
cactcccgcaccgtcacctacttctggtggctggacaacaacaccgagccagtgataacg
ctggaaggcagcatctcgtacaccttcctcaccgaaggcatgcacaccgtcacggtccaa
gtgtcttcctccaacgccattctgcaggacaccagaaccgtggccgtccaagaattcttc
aaatcgctgcttttatctttctcgcccaacctggacgagttcaaccctgacatccccgag
tggaggctggatgtgggccgcgtcattaagaagtctatactccaggtgctggatttccct
gaagagcagctcctggttgccgtgttccccggtgtccccacagctgccgagctcttcctg
ttacccaacaggaaccaatcgcactccaagaagaaccacgaggaggagctggagagggtg
tcaaaaatcatcgtcagcgcgctgaaccagaacttggtggagtttgagctgaagccgggc
atccgcgtcattgtttacttcacacagttaacgttggcacgaccaaaacgtgtgctatct
aacaatctcacagcccccctggtggactccagccccagacacagcagctcggccatgttg
atgctgctgtcggtggtgctgctcggactggctgtgttcctcatctacaagttcaagaga
aaaatcccttggataaacatctatgctgaggtgaaccaggagaaagagcaagagatgatt
ggctcagcaggtcagggtgacagcacacccaagatcaccctgagcgagttcaccacatcc
aaagagcttatggagaaggagctggacgcaaggatcaaacggggtgttgggaattcctgt
gagaacacaagggagattcctaactgtaccagtgtgtaa
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