KEGG   Gadus morhua (Atlantic cod): 115541023
Entry
115541023         CDS       T10832                                 
Name
(RefSeq) LOW QUALITY PROTEIN: trinucleotide repeat-containing gene 6C protein-like
  KO
K18412  trinucleotide repeat-containing gene 6 protein
Organism
gmh  Gadus morhua (Atlantic cod)
Brite
Messenger RNA biogenesis [BR:gmh03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     115541023
Chromosome and associated proteins [BR:gmh03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    115541023
SSDB
Motif
Pfam: TNRC6-PABC_bdg M_domain UBA_7 UBA RRM_1 RRM_occluded UBA_NBR1_C THOC7 Mei5_like
Other DBs
NCBI-GeneID: 115541023
NCBI-ProteinID: XP_030208591
LinkDB
Position
3:7090268..7147412
AA seq 2010 aa
MEKKKRPEEKTKTDAAQKKAADQKTKVPAPAATTPSPGPPRHHLHPSSPTPSLATSSPSC
ASSGNGKRASAAGHTPSPGPPQQQQQQQCQTSSASTRYPPREVPPRFRQQEHKQLLKRGQ
PLPAGPLGGPPPPSATSSDAPNAAKRLPDASLQVGPGAQYETSHWGAPSPINAPSGAGSW
DKVIKGPDTNSWPSTDSDSKHSTASECPLGWADATTDSSATTTTTGTPSSSSSTSLRMAT
GATGQQAHYSSLKGNANMMPGPGPIGANSMASRGWYSDGKQDMMNGGRTGGPHGWGTPGF
NLNLTPTANPSAWPVLGQEGGGMGPNGLANTASLPHGMNGNVANGVLGDPGKGSYGGMMS
PDGGDMQRTSSSAKMSYGMEPAKPCGDGPSHTQRQQQQQQAPEPMSPAHGMPGWGGQSPT
ESSQLNEELTGSSVWGGGDPKPADTSKDSGWDSNPSGGHSGWGRQGSGGGSGGGGSGGGW
GEWGKPPGGGGEGTKGWDSAEAGSPGSGPEQQQQQQQQQQQGSWGQQPGKAPASEGSGDS
TDGRSHRDRTSSMDVSPMLPRQDLDPRVLCNTGWGQTPVRQHTVWEMDEAAADGEKSGGG
SDKWGGSSSSGGPSSGGHSSGGHSSGGQSSGGHSSGGHSNNGGHSAGGPSNGRHSDGSTA
HLNPGPGPGHRPCSGGKNESSGGPSGWGAPPPQPAQTGSGWGEPPPPASKAPHGNSNGGG
GGGNNAGWGEPTPANGPKNGGPQSWGAEEKSPGWGEAPAKSQQANWGEGPKNPQGWGNGS
GGSNGSSTGEWGETDKKKNSPRNSMWEGEGGNDGGGGGGGGGGGRGGGWKDSTRGGGGGG
GGGGGGPGGWGKPTPAAAPNSWGGENQRANGPSQQGGWASSKPQESSSSSSGSGGGGSGG
GMGSWGGPGTVKQSGWGGGGGGGGGGGGGGGGGGGGGGKQEQGAESTGWEEPSPPSIRRK
MEIDDGTATWGDPSGNGKSVNMWDRHHPSGNQGNGGPPPPQQGKNGGMFNNNNIHSVGPG
NPNHNHNQHHHHPPPHHMQHHHHSGHGQPPAHPHSHGNNNGSTNAPPPHQGGGSQGRPPI
ANPGWGELPSSVQAKSEPAWGEPAAPSSAVDNGTSAWGKPPAGMGSWADGGTDPSGPYGR
SQGPPGPAPCKLGPKPMQDGWGGGSDEMGLSGGQWDHTDDGDMWNSPTSQEGSSPCNSWG
NGPKKIPCKKMSSKPDDAWIMGRLIKQLTDMGFPRDPAEEALKSNNMNLDQAMSALLEKK
TELDKRAMTMSDYTNGMSKALGCRPSAHPKDSSDRSAFLDKDGGLSDDAPPSPFLPSPAL
KLPGSNSGLPGHGLGQGGPAGMAMQNLNNRQMPSGMFSSNGAAQARAMQQQQQQQQQQQQ
QQQPPQPPVPLSSAQPSVRAQVPQFLSPQVQAQLLQFAAKNIGLNPALLTSPINPQQMTL
LYQLQQLQMAYQRLQIQQQMMQAQRNMSGPIRQQEQQVARTISNMQQQIQQHQRQLYQAL
LMKQQQQPPSHLSSSSSSSSSSSSAGLHPSASQAGGLGKSLLDAFPGQHQNPGLSDSLHI
KEQASSPGSGYSSYPLSGLNPNMNVNCMEVGGLSLKDPPQPQSRLSQWTHPNSIDNFSAN
STHMENNLNKHGAISAASSLGPSGKGPQMEDSYSPYGLMSGSDSSTNSLGPQDSWGQSKS
PNEKPSNGKHINWPPEFCPGVPWKGLQNIDPENDPNMTPGSVPSGPTINTNIHDVNRYLL
RDRNGGKMSDMKSAWSPGPITHSQASLSHELWKVPQGPRSSVAPSRPPPGLTNSKPAPSS
AWGSNSLGLAQGWSSSYTSEGATWSTDSPHRTSSWLVLRNLTPQIDGSTLRTLCMQHGPL
ITFHLNLTQGNAVVRYSSKDEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRFFAQGQSLG
ATTTSWQANPGTNQTRMGGATQAHPMSQWGSSSGGGGAKSGGGELLWGGGTPQYSSLWGP
PGGGDDARGMGSPSPIHTLLPGDLLSGESM
NT seq 6033 nt   +upstreamnt  +downstreamnt
atggaaaaaaagaaaaggccagaagagaaaaccaagacggacgccgctcagaaaaaggct
gctgatcagaaaaccaaagtgccagcgcctgcggctactacgccgagccctggcccgccc
cgccatcacctccatccctccagtcccacgccgtccctcgctacctcttccccctcctgc
gcttcttccggcaatggcaagcgtgcctccgctgccggccataccccgagtcccggcccc
cctcagcagcagcagcagcagcagtgccagacgtcctcagccagcacccgctacccgccc
cgagaggtgccccctcgcttccgccagcaggagcacaagcagctgctgaagagaggccag
cctctgcccgccggacccctcggaggcccccccccgcccagcgccacctccagcgacgca
cctaacgctgccaagcgccttccagacgcgtccctccaggtcggccctggtgcccagtat
gagacatcccactggggggctccatcgccaatcaacgccccctccggagccggcagctgg
gacaaagtgatcaagggtccagacacaaattcctggccgtccaccgacagcgactcaaag
cactcgacggcgtcagaatgcccactgggctgggctgacgcgaccacagacagcagcgcc
accaccaccaccaccggtactcccagcagcagcagcagtaccagtctgaggatggccacg
ggggccacaggccagcaggcccactactcctccctgaaggggaacgccaacatgatgccg
ggcccgggtcccataggggccaacagcatggccagccgcggctggtactccgacggcaaa
caggacatgatgaacggcggccggacgggcggaccgcacggctggggcacgcccggcttc
aacctgaacctcacccctaccgccaacccctcggcgtggccggtcctgggccaggagggc
gggggcatgggccccaacgggctggccaacaccgcctccctgccccacgggatgaacggg
aacgtggccaacggggtcctgggcgacccgggcaaaggcagctacggcggcatgatgagc
cccgacggtggcgacatgcagcgcacctcgtccagcgccaagatgtcctacggcatggag
cccgccaagccctgcggcgacggacccagccacactcaacgacagcagcagcagcagcag
gccccagagcccatgagccccgcccatgggatgcccggctgggggggccagtcccctacg
gagtcctcccagctcaacgaggaactcacgggcagctctgtgtgggggggcggggacccc
aagccggccgacacctccaaggactccggctgggactccaacccctcggggggccactcc
ggctggggccggcagggcagcggcgggggcagcggcggcggcggcagcggcggcggctgg
ggagagtgggggaagccccctgggggaggaggtgaaggcaccaaggggtgggactcggcc
gaagccgggagcccggggtccggcccggagcagcagcagcagcagcagcagcagcagcag
cagggttcctgggggcagcagcccgggaaggcccccgcaagcgagggtagcggggacagc
accgacgggcgttcccaccgggacaggacctccagcatggacgtctctcccatgctgccc
cgccaggacctggaccccagggtgctgtgcaacaccggctggggccagacgcctgtccgg
cagcacactgtctgggagatggacgaggccgccgccgacggagagaagagcggcggcggc
tcagacaaatgggggggctcctcctccagcgggggtccctccagcggcggacattccagc
gggggtcactccagcggcggacaatccagcgggggtcactccagcggcgggcactccaac
aatggcgggcacagcgccggcggcccctccaacggcaggcattccgacggaagcacggcg
cacctcaacccaggccccggccccggccataggccatgctccgggggtaagaacgagagc
tccggcgggccctctggctggggggcacccccgcctcagccagcccagaccggatcggga
tggggtgaacctccaccgccggcgagcaaggccccccacggcaacagcaatggcggcggc
ggcggcggcaacaacgccggctggggcgagcccacgcctgccaacggccccaagaacgga
ggcccccagtcctggggcgccgaggagaagtcccccggctggggcgaggcccccgcaaag
agccagcaggccaactggggcgagggccccaagaacccccaaggctgggggaacggcagc
ggaggctccaacggatccagcaccggagagtggggagagacggacaagaagaagaacagc
ccccgcaacagcatgtgggagggagagggcgggaatgatggaggaggaggaggaggggga
ggaggaggaggaagaggaggcggatggaaggatagtaccagaggaggaggaggaggagga
ggaggaggtggtggtggacccgggggttggggtaagcctaccccggccgcggcacccaac
agctgggggggagagaaccagcgggccaacggtccctcccagcagggcggctgggcctcc
tctaagccccaggagagcagcagcagcagcagtggcagcggcggcggcggcagcggaggt
ggcatggggtcttggggtgggcccggtacagtgaagcagagcggctggggaggcggtgga
ggaggcggtggaggaggtggaggcggtggaggtggaggcggtggcggtggcggcaaacag
gagcagggtgcagagtccacgggctgggaggagccctccccaccctccatccgcaggaag
atggagatcgacgacggcaccgccacctggggggaccccagcggcaacggcaagtcggtc
aacatgtgggatcgccaccaccccagcggtaaccagggtaacggcggcccgcctccgccg
caacaaggcaagaacggcggcatgttcaacaacaacaacatccactcagtcggccccggc
aaccccaatcacaatcacaaccagcaccaccaccacccaccccctcatcacatgcagcac
caccaccactccggccacggacaaccccctgctcacccccacagccacggcaacaacaac
ggatcaaccaacgcccccccaccgcaccagggtgggggctcgcagggtcgaccccccatc
gccaacccaggttggggagagctgcccagcagcgttcaggctaagtctgagcctgcgtgg
ggggagccggccgccccctcctcggcagtggacaacggcacgtcggcctgggggaagccc
cccgccggcatgggcagctgggccgacgggggcacggacccctccggcccctatggccgg
tcccaaggacccccaggccctgcaccctgcaagctaggccccaaacctatgcaagacggc
tggggaggcggcagtgatgagatgggcctgtctggaggccaatgggaccacaccgacgac
ggggacatgtggaacagtcccacctcccaggagggcagctctccctgcaactcctggggc
aacggccccaagaagatcccatgcaagaagatgagcagcaagccagatgacgcctggatc
atgggccgtctcatcaaacagctgactgacatgggcttcccgagagatcctgctgaagaa
gccctgaagagcaacaacatgaatctggaccaggctatgagtgctctgctagagaagaag
acggagctggacaagcgggccatgaccatgtctgactacaccaacggcatgagcaaggca
ctgggctgccggccctccgcccaccccaaagactcctccgatcgcagtgctttccttgac
aaggacgggggtctgtctgacgacgcccccccctcaccgtttctgccttcccccgctctg
aagctgcccgggtccaacagcggtctgcccggccacggtctgggacagggcggccccgcc
gggatggccatgcaaaacttgaacaacagacagatgcccagtggaatgtttagcagtaat
ggagcagcacaagccagggccatgcagcagcagcagcagcagcagcagcagcagcagcag
cagcagcagcctcctcagccacccgtgcccctcagctccgcccagcctagtgtccgtgct
caagtgcctcagtttctctcccctcaggttcaagcacagctcttgcagtttgccgcaaaa
aatattggtctgaaccctgcacttttaacctcgccaataaatcctcaacaaatgaccctg
ttgtaccaactccagcaactgcaaatggcgtaccagcgtttacagatccagcagcagatg
atgcaggcacagcgaaacatgtccggtccaatcagacaacaagagcagcaagttgcacgt
acaatcagcaacatgcagcagcagatccagcagcaccagcgccagctctaccaggccctg
ttgatgaagcagcagcagcagcctccctcccacctgtcctcctcttcctcctcctcctcc
tcctcctcctccgccggactgcacccgtctgccagccaagctgggggtctcggaaagtcc
ctcctggacgccttcccgggacagcaccagaacccaggcctctctgactctctgcacatc
aaagagcaggcctcctccccgggcagtggctacagctcctaccctctctctggactcaat
ccaaacatgaatgtaaactgcatggaggttgggggcctctctctgaaggaccccccccag
ccccaatcccgtttgtcccagtggacacaccccaactctatagacaacttctctgccaac
tccacacacatggagaacaacctcaacaagcacggggccatttctgctgcctccagcctg
ggcccctccgggaagggcccccagatggaggactcctacagtccctacggcctgatgtcc
ggctccgactcctccaccaacagtctggggccacaggacagctggggccagtccaagagt
cctaacgagaagccctccaacgggaaacacatcaactggccccccgagttctgcccgggt
gtcccctggaagggcctgcagaacattgaccctgagaacgaccccaacatgacccctggc
agcgtgcccagtggccccaccatcaacaccaacatccatgacgtcaacagatacctgctg
cgggaccgcaatggaggcaaaatgtccgacatgaagtcggcctggtccccggggcccatc
acccacagccaggcgtccctgtcccacgagctgtggaaggtgccccaggggccccgtagc
agcgtggccccctcccgccccccgcccggcctcaccaacagcaaaccggcgccctccagc
gcctgggggagcaactccctgggcctggctcagggctggagcagctcctacacctctgaa
ggcgccacctggagcaccgacagccctcacaggaccagcagctggctggtgctgaggaac
ctcaccccccagattgatggctcaaccctgaggaccctatgcatgcagcacggccccctg
atcacattccacctcaacctgacccagggcaacgccgtggtgcgctacagctccaaggac
gaagccgccaaggcccagaagtccctgcacatgtgtgtcctggggaacaccaccattctg
gctgagtttgccggcgaggaggaggtgaaccgcttctttgcacaaggccagtcgctaggg
gcgaccaccactagctggcaggccaacccgggaacaaatcagacccggatgggcggggcc
acgcaggcccatcccatgagccagtggggcagcagctccggcgggggcggggccaagtcg
ggcggaggggagctgctatggggggggggcaccccccagtactccagcctatggggaccc
cccgggggcggagacgatgcccgcggaatgggaagcccctcccctattcacactctgctg
cctggagacctgctgagcggagagtccatgtag

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