Gadus morhua (Atlantic cod): 115541452
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Entry
115541452 CDS
T10832
Symbol
rtcb
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gmh Gadus morhua (Atlantic cod)
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gmh03016
]
115541452 (rtcb)
Enzymes [BR:
gmh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
115541452 (rtcb)
Transfer RNA biogenesis [BR:
gmh03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
115541452 (rtcb)
Prokaryotic type
tRNA splicing ligases
115541452 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
115541452
NCBI-ProteinID:
XP_030209054
Ensembl:
ENSGMOG00000018882
LinkDB
All DBs
Position
4:complement(1903825..1911272)
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AA seq
505 aa
AA seq
DB search
MARSYDDELQYLEKIDKTCWRIKKGFVPNMKVEGIFYVNGPLEKLMFEELRNACRGGGFG
GFLPAMKQIGNVAALPGIVNRSIGLPDVHSGYGFAIGNMAAFDMSDPTAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQALFDHIPVGVGSKGVIPMTAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYDD
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMRRDNIVVNDRQLACARIHS
AEGQDYLKGMAAAGNYAWVNRASMTFLTRQAFSKVFATTPDDLDMHVIYDVSHNIAKVEE
HMVDGRPKTLLIHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMT
ETFGTTCHGAGRALSRAKARRNFDFQDVLDKLADQGIAIRVASPKLVMEEAPDSYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atggctcgatcctacgatgacgagttgcaatacttggagaaaattgacaaaacctgttgg
cggataaaaaaggggtttgtgcccaatatgaaggttgaaggaatcttctacgtgaacggt
ccccttgagaagctgatgtttgaggagctccgcaatgcctgtcggggaggaggctttggt
ggtttcctcccagctatgaaacagattggaaatgtcgccgcactgcccggaatagtgaac
aggtccatcggtctccctgacgttcactccgggtacggcttcgccattggaaacatggcc
gccttcgacatgagtgaccccaccgctgttgtgtcacctggcggcgtggggttcgacatc
aactgcggcgtgcgtctgctgcggaccaacctggacgagggcgacgtgcagccggtgaag
gagcagctcgcccaggcactgttcgaccacatccccgtgggcgtcggctccaagggcgtc
atccccatgaccgccaaggacctggaggaggccctggagatgggcgtggactggtcccta
agggagggctatgcctgggccgaggacaaggagcactgcgaggagtacggccgcatgctg
caggccgaccccaacaaggtctcctccaaggccaagaagaggggcctgccgcagctgggc
accctgggagcgggcaaccactacgccgagatccaggtggtggacgagatctacgacgac
tacgccgccaagaagatgggcatcgaccacaagggccaggtgtgcgtaatgatccacagc
ggcagccgcggcctcggccaccaggtggccacagacgccctggttgccatggagaaggcg
atgaggagggacaacatcgtggtgaacgaccggcagctggcctgcgcccgcatccactcg
gccgagggccaggactacctgaagggcatggccgccgccgggaactacgcctgggtcaac
cgcgcctccatgaccttcctcaccagacaggccttctccaaggtgtttgcgaccacgccc
gacgacctggacatgcacgtgatctacgacgtgtcccacaacatcgccaaggtggaggag
cacatggtggacggccggcccaagacgctgctgatccaccgcaagggctccacccgcgcc
ttccccccgcaccacccgctcatcgccgtcgactaccagctcacaggacagccggtgctg
atcggagggaccatggggacgtgcagctacgtgctgacggggacggagaagggcatgacg
gagaccttcggcaccacctgtcacggagcgggtcgtgctttatcccgagcgaaagcccgt
cgtaacttcgacttccaggacgtgctggacaaactggctgaccagggcatcgctatcagg
gtcgcgtctcccaagctcgtcatggaggaggctcccgactcgtacaaaaacgtcacagat
gtcgtgaacacgtgccacgacgccggcatcagcaagaaagccatcaaactccggccgatc
gcggtgattaagggttga
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