Gadus morhua (Atlantic cod): 115541570
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Entry
115541570 CDS
T10832
Symbol
col5a1
Name
(RefSeq) collagen alpha-1(V) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
115541570 (col5a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gmh00536
]
115541570 (col5a1)
Glycosaminoglycan binding proteins [BR:
gmh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115541570 (col5a1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
ConA_2nd_BAM2
Motif
Other DBs
NCBI-GeneID:
115541570
NCBI-ProteinID:
XP_030209191
LinkDB
All DBs
Position
4:19477537..19550610
Genome browser
AA seq
2049 aa
AA seq
DB search
MDSRIRWKVKRRIRDAQITLAAILLFVTSPASSADPADLLKILDFHSLPEGVSKTTGLCS
HRRSTNGPDVAYRVSREAQLSAPTKQLYPGDVFPEDFSILATVRPKKGSQSFLMSVYNEQ
GIQQLGLEVGRSPVFLYEDHTGKPGPEDYPLFRGVNLADGKWHRVAISVHKQTITLILDC
KKKTTQRLQRSAHPIVDTKGIVVFGTRILDEEVFEGDIQQLMIVADHRAAYDYCEHYSPD
CEVAVPDQPQNQDPNPNEYSPEEDSYYYEYPYYDELGSKPSSETEEAKEEKEVQGSRTVT
SEKASAGPANVVASSSASASSTGGTAAGGGADADGETPYDNYDSYGNYESYYDETTPSLP
PDAARRVTVSSSSAAGGSLDLGGGVDVQPGTGAGLERRVISTGAGSDGGAATAITTDKPA
VGDAYDGAYGEYEYEVEGDATAGGAGSTTTHLGGGGGSSSSSTVNLGGGVGGSSSSTVNL
GGGVGGGGSSSSSSSTVDLGVGGGGSSSSGTISLGGGGGSSSSTIILGGGGGGGDGGGGG
GGGGGGGSTSSSSSSINLGGGGSSSSSTINLGGGSSSSSSTVSLGGGAAGGGGGATGTGE
GDYTDQGGFKEEHVTDYTDLDKDIYDVYGVDYDDNDGKVLPAVTNGDYTEVISSRAEKGQ
KGEPAVIEPGMLVEGPPGPEGQAGLPGPPGSSGSPGNSGDNGERGPTGRPGLPGADGLPG
PPGTVLMLPFRFSSGADSGQKGPAMSAQESQMQAIMQQARLAMRGPSGPMGLTGRSGPLG
SPGVSGLKGDSGDPGPQGPRGPLGSYGPTGKPGRRGRSGADGARGMPGQTGTKGDRGFDG
LAGLSGEKGHRGEAGPSGPPGGPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPQGPPG
PPGVTGMDGHPGPKGNIGPQGEPGPNGQQGNPGAQGLAGPQGAIGPPGEKGPLGKPGLSG
MPGADGPPGHPGKEGPNGEKGHLGPSGPQGPIGYPGPRGVKGADGVRGLKGGKGEKGEDG
FPGFKGDMGIKGDRGELGPAGPRGEDGPEGPKGRSGLPGDSGPLGPNGEKGKLGVPGLPG
YPGRQGPKGSQGFQGFPGANGEKGTRGTAGKSGPRGQRGPTGPRGERGPRGPTGKAGPKG
NSGSDGPPGPLGERGLPGPQGPTGFPGPKGPPGPAGKDGLPGHPGQRGETGFQGKTGPPG
PPGVVGPQGPTGETGPMGDRGHPGPPGPPGEQGLPGAAGKEGAKGDPGPAGPAGKDGPPG
LRGFSGDRGLPGPVGAHGLKGSEGPPGPPGPAGSPGERGPAGPAGPPGPTGRPGHQGPPG
PSGEKGGPGEKGPQGPAGRDGIQGPVGLPGPGGPPGPPGEDGDKGELGEPGQKGGKGDKG
EHGPPGPTGPQGPVGAPGPAGADGEPGPRGQQGLFGQKGDEGSRGFPGPPGPVGLQGLPG
PPGEKGETGDVGQMGPPGPPGPRGPSGPSGADGSQGPPGGIGNPGSVGEKGDSGETGTPG
LQGEVGPPGPRGERGEKGEGGPAGTAGPPGPKGPPGDDGPKGSPGPSGFPGDPGPPGETG
PAGLDGPAGDKGDDGEAGQPGSPGPTGESGPSGPPGKRGPHGVAGPEGRQGEKGAKGESG
LEGPQGKTGPVGAQGSPGKPGSEGLRGIPGPVGEQGFPGSPGPDGPPGPMGPPGLLGLRG
DSGIKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGASGPKGDNGISGPSGPLGPLGPPG
VPGSPGPKGAKGSSGQTGPKGESGVPGPPGSPGPPGDVIHPMPMHAPMKGRSRRNIDASQ
MQDDAPAADANYKDYDDGMEEIFGSLNSLKLEIEQMKHPLGTQANPARTCKDLQLCHPDF
PDGAYWIDPNQGCSRDSFKVYCNFTAGGESCIFPDKKSEGTRLTSWAKEVAGSWFSEYKR
GKLLSYVDAEGNPVGVVQMTFLRLLSAAARQNMTYNCFQSVAWHDQGADNYDKAIRFLGS
NDEEMSYDNNPYIRAIVDGCALKKGYEKTILEINTPKVEQVPFVDIMFNDFGGSAQKFGF
EVGPVCFMG
NT seq
6150 nt
NT seq
+upstream
nt +downstream
nt
atggattcccgaataagatggaaagtaaaacggcggataagggacgctcagatcactcta
gcggccattctcctgttcgtcacgtcgccggccagctcagctgatccagcggaccttttg
aagattttagattttcacagtttacccgagggagtgtcgaaaacaacaggcttatgctca
catcggaggtcaacaaacggaccggatgtggcctacagggtatccagagaggcccagctc
agcgcgccaaccaaacagctgtacccaggtgatgtgttccccgaggacttctccatcctg
gccaccgtccggcccaagaagggcagccagtccttccttatgtcggtgtacaatgagcaa
ggcatccagcagctgggcctggaggtggggcgctcgcccgtcttcctgtacgaggaccac
acggggaaacccggcccggaggactaccccctcttcagaggggtcaatctggccgacggg
aagtggcatcgcgtggccatcagtgtgcacaagcagaccatcactctcatcctggactgt
aagaagaagaccacccagaggctgcagcgcagtgcccaccctatcgtggacaccaaggga
atcgtagtctttggaaccagaatacttgatgaagaagtctttgagggggacatccagcag
ctgatgattgtagcagaccaccgcgctgcctatgattactgtgaacactacagccccgac
tgtgaggtggccgtccccgaccagcctcagaaccaggaccccaaccccaatgaatacagc
cctgaagaagacagctactactatgagtatccttactatgatgagctgggaagcaagccc
agctcggagaccgaggaggctaaggaggaaaaggaggtccaagggagccgcacggtcacc
tcagagaaggcgagcgcgggtcccgcaaacgtggtggcgtcctccagtgccagcgcctcg
tccaccggcggcacggccgcgggcgggggggcggacgccgacggggagaccccctacgac
aactacgacagctacggcaactacgagtcctactacgacgagaccacgccctccctgccg
ccggacgcggcccgcagagtcaccgtgtccagcagcagcgcggccgggggctccctggac
ctcggcggaggcgtggacgtccagccgggcactggggccggcctggagcggagggtcatc
tccaccggcgccggttctgacggaggagcggcgacggcgatcaccaccgacaaacccgcc
gtgggagacgcctacgatggcgcctacggggagtacgaatatgaagtagagggcgacgcc
accgccggtggagccggtagcaccaccacccatctcggaggaggtggaggttcctccagc
agcagcaccgtcaaccttggcggtggagttggaggctcaagcagcagcaccgtcaacctg
ggcggtggagttggaggtggtggttccagcagcagcagcagcagcactgtcgaccttggc
gttggaggtggaggttccagcagtagtggtaccatcagccttggtggaggtggaggctcc
agcagcagcaccatcatcctgggaggtggaggtggaggtggagatggaggtggaggtgga
ggtggaggtggaggtggaggttccactagcagcagcagcagcagcatcaaccttggcgga
ggcggaagctccagcagcagcaccatcaaccttggtggaggctcaagcagcagttccagc
accgtcagcctcgggggcggggcagccggaggaggaggcggcgccaccgggacgggcgag
ggggactacaccgaccagggcggctttaaggaggagcacgtcacagactacacggacctg
gacaaggacatctacgatgtgtacggcgtagactacgacgacaacgatggcaaggtgctg
cccgccgtcaccaacggcgactacacagaggtaatctcatctcgcgcagagaagggacag
aagggagagcctgcagtcatcgagcctggcatgttggtggaaggacctcctgggcctgaa
ggtcaagcaggtcttcccggacccccagggtcttcgggctcacccggcaatagcggtgat
aacggtgagaggggtcctactggccgtcctggtcttcctggtgctgatggtctgccaggc
cccccaggaactgtcctgatgctgcctttccgcttcagctctggggctgactctggccag
aagggaccagccatgtccgcccaggagtctcagatgcaagccatcatgcagcaggccagg
ctggctatgcgcggaccttctggaccaatgggtttgactggcagatctggacctcttggg
tccccaggtgtgtccggtctgaagggagattcaggagaccccggccctcaggggccacgc
ggacccttgggatcttacggacccacagggaagcctggaaggaggggccgctccggagcg
gacggagccagaggtatgcctggacagaccggaaccaagggagaccgaggattcgacggg
ctggccgggctctccggcgagaaaggacaccggggtgaagccggaccttcagggcctcct
ggtggaccaggagaagatggagaaagaggagacgacggagagatcgggccacgaggactc
cccggtgaatctggaccccgcggtttgttgggacccaagggaccccaaggcccccctgga
ccacctggtgtcaccggtatggatggccacccaggacccaaaggaaacattggacctcaa
ggagagcccggccccaacggacagcaaggcaaccccggagctcagggactcgcagggccc
cagggagccatcgggcccccaggagagaagggtcctttaggaaaaccaggtctgtcagga
atgcccggagccgatggacccccgggtcaccctggcaaagaaggaccgaatggagagaag
ggacacttggggccatccggccctcaagggcccattggttatcctgggccccgcggtgtg
aagggggccgacggtgttcgtggtctaaagggagggaagggagagaagggcgaggatgga
ttcccgggcttcaagggagatatgggtatcaagggtgacaggggagagctcgggccagcc
ggacctcgcggagaagacggtcctgagggccccaagggacgctcgggtctgcccggagat
tctggacccctaggacccaacggtgaaaagggtaaactcggagtacctggtcttccaggt
tatccaggcagacaaggaccaaaggggtctcagggattccaagggttccccggagccaat
ggagagaagggaaccaggggaaccgctgggaaatctggccctagaggacagagaggcccg
accggaccgcgtggagagcgagggcccaggggacccactggaaaggctggacccaaggga
aactctggaagtgatggacctccaggacctctgggagagaggggtctccctggacctcaa
ggaccaactggattcccaggaccaaagggcccccctggcccagctggaaaggacggcctg
cccggtcaccctgggcagagaggagagactggtttccaaggcaagaccggccctccaggg
ccccccggcgtggttggcccccagggcccgacaggtgagaccggaccaatgggagatcgt
ggccatcccggacccccaggcccacctggtgagcagggtttgcccggagcagctggcaaa
gaaggagcaaagggggatccaggtcccgccggccccgctggtaaagacggtcctcctggt
ctcagagggttctccggagacagaggtctacccggtcccgtgggtgctcatggcttgaaa
ggcagtgaaggaccacctggaccacctggccccgctggttctcctggtgagcgtggcccc
gccggccccgctggacccccaggccccaccgggcgtcccggacaccagggccccccaggg
ccctccggagagaagggtggaccgggagagaaaggccctcaaggacccgctggtagagat
ggtatccagggtcccgtgggtctgcccggccccggtggaccacccggacccccaggcgag
gatggagacaagggagaactcggagagcccggccagaagggaggcaagggggacaaaggg
gaacacggtccgccaggacctacaggaccccaaggaccagttggagcccccggccctgct
ggtgcggatggagagccaggtcccagaggtcagcagggtctcttcggacagaagggagac
gaagggtcccgaggattccccggcccccccggcccagtcggactgcagggcttgcccgga
cccccaggcgagaaaggagaaactggagatgtcggacagatgggacccccaggccctcct
ggccccagaggcccatcagggccctcaggagccgatggctctcaaggaccccccggtggc
atcggaaaccctggatctgtgggagagaagggagactctggagagaccgggacccccggt
ctgcagggtgaagttggcccaccgggtccaagaggagaacgtggagagaagggagaaggt
gggcctgccggtaccgccggaccccccggtcctaaaggaccccccggagatgacggtccc
aaaggcagccctggtcctagtggtttccctggtgatccgggaccacctggagagactggt
ccagctggtttagacggtcccgcgggtgacaagggagacgacggagaggctggtcaacct
ggttcccctggacctactggagaatctggaccctccggtccaccaggaaagagaggaccc
cacggtgtagctggacctgaaggaagacagggggagaagggagccaagggcgagtctggt
ttggaaggtccccaaggaaagaccggtccggtcggagcgcagggatctcctggcaagcct
ggctctgagggtctgcgcggcatccctggtccagttggagagcaagggttcccaggatcc
cctggacctgacggacctcccgggcctatgggtccccctgggctgctcggcctcagagga
gactccggtatcaaaggagagaagggtcaccccggtctcattggccttatcggacctccg
ggagaacagggggagaagggcgaccgaggtctgcccggaccccagggagcctcgggtcct
aagggagacaacggcatctctggtccttctggtccactgggtcccctcggacctccagga
gtaccaggttctcctggtcctaaaggagccaagggatcatccggacaaaccggtcctaag
ggagaatctggagttcctggaccccctggctctcctggcccccctggcgacgtcatccac
ccgatgcccatgcacgcgcccatgaagggccgctcccgccgcaacatcgacgccagccag
atgcaggacgacgcgcccgccgccgacgccaactacaaggactacgacgacggcatggag
gagatcttcggctccctcaactcactgaagctggagatcgagcagatgaagcacccgctg
ggcacccaggccaaccccgcccggacctgcaaggacttgcagctctgccaccccgacttc
cctgatggcgcgtactggatcgatcccaaccagggatgctctcgggactctttcaaggtt
tactgcaacttcaccgcgggaggcgagagctgcatcttccccgataagaagtctgaaggg
actagacttacgtcctgggccaaggaggtcgctgggtcctggttcagtgaatacaaacgt
gggaaactgctgtcctacgtggacgcggagggcaaccctgtgggcgtggtccagatgacc
ttcctgcggctgctgagcgccgccgcccggcagaacatgacctacaactgcttccagtcg
gtggcctggcacgaccagggcgcggacaactacgacaaggccatccgcttccttggctcc
aacgatgaggagatgtcctacgacaacaacccctacatccgggccatcgtggacggctgt
gcgctgaaaaagggctacgaaaagacaatacttgagatcaacacaccaaaggtggaacag
gtgccatttgttgacatcatgttcaacgactttggcgggtcagctcagaagttcggcttc
gaggtcggccccgtctgtttcatgggctaa
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