Gadus morhua (Atlantic cod): 115542068
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Entry
115542068 CDS
T10832
Symbol
vps16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog isoform X1
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh04140
Autophagy - animal
gmh04148
Efferocytosis
gmh05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
115542068 (vps16)
04148 Efferocytosis
115542068 (vps16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
115542068 (vps16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gmh04131
]
115542068 (vps16)
Membrane trafficking [BR:
gmh04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
115542068 (vps16)
Hops complex
115542068 (vps16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
ANAPC4_WD40
DUF4298
Motif
Other DBs
NCBI-GeneID:
115542068
NCBI-ProteinID:
XP_030210019
Ensembl:
ENSGMOG00000012701
LinkDB
All DBs
Position
4:complement(43225702..43250147)
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AA seq
838 aa
AA seq
DB search
MAFITANWNPLGEAFYRKVELYEMSWVLRDGLRDSLVAAAPYGGPIAVMKESQCLSPSVR
PQLDIYTASGVTMATFPWKSGPVVQLGWSVSEELLCVQQDGTVLIYDLTGAFLRHFSMGQ
EVVQSHVSEAKIFHSPYGTGVAIVTGSSRFTLATNIDDLKLRRLPEVPGLQGAPSCWAVL
NQDRQTKVLLANGPELYLLDNTCCTSVVLPGGSPLDGVFVHIAVSFSYKYLALFTDTGHL
WTGLANLQDKLSEVDTKIRSPPKQMVWCRRPQTQQPSVVVLWERLLLVVAVGGDTVQYPL
DEACVCVGELDGVRLLSPSRHELLQEVPLVCEDIFKIASMGPGALLLEAHKEYQKSSQKA
DEYLREIKEQGMLGDAVRQCVEAAGHEQHTHTQKALLRAASFGKCFLTNLSPEAFVSVCR
DLRVLNAVRDPSIGIPLTHTQYKQMTVQVLIDRLVYRRLYPLAIEVCRYLKTPEYQGVSR
ILRHWACSKVQQKGESDEVMVRCISGRLADSPGISYSHIASKAYDSGRTELAIKLLDYEA
RSGEQVPLLLKMRRSQLALSKAIESGDTDLVYTVVSYVKNEMNRGDFFMTLRNQPVALSL
YRQFCKLQEQETLKDLYNQDDDHQELANYYVSASYREKRLEARLSVLQSAVDEYNKAKNE
FSSKATEEEMRLLRFQRKLDDEKGAGLLGLSLQATMEALLASGLQKQADHLYRDFRVSDK
RYWWLKLKSLAEKEEWEELEKFSKSKKSPVGYLPFVEVCMKKSNKYEAKKYVTKVTPEQR
VRAHLTIEDVEGAADAAIERRSEAEIGTVISHCSSSSSSSQRLLLDKLQRALTTANRK
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atggccttcatcacggccaactggaaccccctcggggaggccttctacaggaaggtggag
ctgtacgagatgtcctgggttctgcgggacggactgagagactctctggtcgctgctgct
ccatacggaggacccatagcggtgatgaaggagtcccagtgtctctctcccagtgttcgt
cctcagctggatatctacacagcatcaggtgttaccatggcaaccttcccgtggaagagc
ggcccagtggtgcagctgggctggtcggtcagcgaggagctgctctgtgtgcagcaggac
gggacggtgctgatctacgatctgacgggggccttcctgaggcacttcagcatgggacag
gaggtcgtccagtctcacgtctcggaggctaaaatcttccactcaccgtacgggacgggc
gttgccatagtgaccggctcctcccgcttcaccttggcaaccaacatcgatgacctcaag
ctgaggagactgcctgaggtcccaggtctgcagggtgctccgtcctgctgggcggtcctg
aatcaggacagacagaccaaagtcctgctggccaacggcccggagctctacctgctggac
aacacctgctgcacctccgtggtcctgccaggtgggtcccctctggacggtgtgttcgtc
cacatcgccgtctccttcagctataagtacctcgccctgttcaccgacacgggacacctg
tggacgggactcgccaacctgcaggataaactgagtgaggtggacaccaaaatcagaagc
cctcctaaacagatggtctggtgccgccggccccagacccagcagccctccgtggtggtg
ctgtgggagcgcctcctcctggtggtcgccgtcggcggcgacactgtgcagtaccctctg
gacgaggcgtgtgtgtgcgtgggggagctggacggcgtgcggctgctgtcccccagcaga
catgagctgctgcaggaggtcccgctggtctgtgaggacatcttcaagatcgcctccatg
ggccccggggccctgctgctggaggcccacaaggagtaccagaagtccagtcagaaggcg
gatgagtacctgagggagatcaaggagcaaggcatgctgggagacgcagtccggcagtgt
gtggaggcggccggacacgagcagcacacacacacacagaaggccctgctgcgggccgcc
tcctttgggaagtgcttcctgaccaacctgagtcctgaagccttcgtctccgtgtgtcga
gacctgagggtcctgaacgccgtgagagaccccagcatcgggatccccctcacacacacg
caatataaacagatgacggtgcaggtgttgattgacaggctggtgtaccgtaggctctac
cctctggctatagaggtgtgtcgctacctgaagactccggagtaccagggagtcagccgg
atcctgagacactgggcctgcagcaaggtgcagcagaagggggagagtgatgaggtgatg
gtgcgctgtatcagcgggcgtcttgccgactccccggggatctcctactcccacatcgcc
tccaaggcctacgacagcggccgcaccgagctcgccatcaagctgttggactatgaggct
cgttcaggggaacaggttcctttgctgctgaagatgaggaggagtcagctggctctgagc
aaagccatcgagagcggagacactgacctggtgtacacggtggtgagctatgtgaagaac
gagatgaaccgaggagatttcttcatgaccctcaggaaccaaccggtggccctcagtctg
tacagacagttctgtaagcttcaggagcaggagacgctgaaggacctctacaaccaagac
gacgaccaccaggagctagctaactactacgttagcgctagctacagggagaagcggctg
gaggcccgtctgtccgtcctgcagagcgctgtggacgagtacaacaaggccaagaacgag
ttctcctccaaggcgaccgaggaggaaatgcgtcttctccgtttccagagaaaacttgat
gatgaaaagggggcgggactactgggcttatctctacaggcgaccatggaggccctgctg
gcgtctggactccagaaacaggcggaccacctctaccgggacttcagagtgtcggacaag
aggtactggtggctgaagctgaagtcattggctgagaaggaggagtgggaggagctagag
aagttttccaagagcaagaagtctccggttggctacctgccctttgtggaggtgtgtatg
aagaagagtaataagtacgaagccaagaagtacgttaccaaggtaacgccggagcagagg
gtccgcgcacacctgaccatagaggacgttgaaggggcagctgatgcggccatagagagg
aggagcgaggcagagatcgggacggtgatctcccactgctcctcctcctcctcctcctcc
cagcgcctcctgctggacaaactgcagcgcgccctgaccaccgccaacaggaagtga
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