Gadus morhua (Atlantic cod): 115542660
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Entry
115542660 CDS
T10832
Name
(RefSeq) laminin subunit beta-1-like
KO
K05636
laminin, beta 1
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh04510
Focal adhesion
gmh04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115542660
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115542660
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
Motif
Other DBs
NCBI-GeneID:
115542660
NCBI-ProteinID:
XP_030210847
Ensembl:
ENSGMOG00000013965
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Position
4:complement(3744825..3791661)
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AA seq
1785 aa
AA seq
DB search
MWILHLAILLAVGWRAGAMLPDFGEGCTVGSCYPATGDLLIGREDKLSVSSTCGLEEPER
YCIVGHLEGEKKCFTCDSKHMYDERLHPDSHTIENLVTTFASNRLKTWWQSENDMENVTI
QLDLEAEFHFTHLIMTFRTFRPAAMVIERSMNFGKTWQVYRYFGYNCQTAFPGVSQGPMV
DVDDVVCDSRYSDIEPSTEGEVIFRVLDPAYKIEDPYSPRIQNLLKITNLRVRFSKLHTL
GDNLLDHRDEVTQKYYYALYDMVVRGNCFCYGHAAKCAPMEGAREGVEGMVHGRCVCEHY
TEGLNCERCQDFYHELPWRPALGYNTNACKRCECNHHSFACHFDMAVYVSTGNMSGGVCE
ACLHNTTGRQCEQCRPFFYQHPNRDLRAPHICEPCNCDPEGSLQGGMCDGRTDVSAGLIS
GQCRCKASVEGERCDHCRQGHYGLGQGDSGCLPCTCNALGTLPGGTPCDMHSGKCLCKRL
VDGDHCDLCLPQHWGLANDMDGCRACDCDQGGAIHNNCNQHTGQCECQEHMSGRRCDQVD
SGFYFIALDHYTYEAEDAAHGPGVTVVPRPSPLDRSPTWTGVGFVNVPEGAFLEFTIDNV
PESMDYDLLIRYEPQLPEEWENVRIRVDRPDPSLLETTSHCGTSDYLQSGDEQTVALSPG
SRHVELGWPVCLEQGLNYTVRLSLPHYSAHAQVHKPHTLIDSLVLMPRVQELNLFEGSEG
EAAWDTFQRYRCLESSQSVVKSPATDICDDYIFSVSALLHQGAMACQCDPQGARSAVCDP
SGGQCQCRPNVVGRNCEHCSPATFLFGPDGCRPCECDPRGSTHAFCHEATGQCACVAGAT
GRQCSGCLPGHWGFPHCRPCHCNGHSALCSAHTGECLDCRENTAGHNCERCLVGYHGDPA
LGSGGHCRPCMCPDGPGSRRQHADGCYHRHDQDLMVCACRPGYKGVRCEECAPGHYGDPQ
VPGGRCMPCQCSANIDLQDPGACDARSGACLRCLHHTEGPACDRCRAGYHGNATTQSCRK
CMCEPLGSAAGACPAEGGCHCDRRTGQCPCRPSVLGQSCDRCAPDTWGLGGGEGCQSCDC
EPGHAFGSSCDLLTGQCSCKPGFGGRTCRECRDLFWGDPKVKCHACACNPRGITGEQCHR
SSGQCPCVAGVSGPRCDQCARGYSGAFPACEPCHGCFALWDVAVGELTNQTRALSGHVAE
LQSGGGAVTAPYRELVGRLEANAAAVRVVLEGDGAVAALDEARELMNHILGVMSYLNGML
NTTDGDLGSLRDQGNATRATLDQLTEEAGALERAVKELKEQVYNAKNSNFQGAMDTISEA
HLDSTTAELQVNSSTSHPGNTVEQSAALRKATEDELSGSQKEFERKVERQTQKLDKLDAS
LEEMDLSELSVKTCGAVGGNDEACSGGPCGGLGCVGEDGAPRCGGQTDCKGLVAASAAAH
KSAQDLDLEIVSAMQEVEKLSRLVFDAKLRAGEAKVTAQQVLVRANQSKERVEQSNEQLR
ALIRDIRDLLTNGKANVSVVEMVSNEVLAMELPTSSSELQNMTRDIRERVSSLTSVEGVL
SQSAEDIAAAERLLLQAKAASEEASTLKETIDLARAALEEADKAQNLASDAIQQAMQNTN
STMTLLLSVESVTEASEFSLSNATGRLLQLEREVGLLRQSHLEASRTAAGATASSERATE
DAEQAQQEFDGAVTEQYGRAQELVEDKGEVVLEARRRADALQTEAKELLAQSSDKLQRLR
ELERSYEVNQRTLEDKAEELALLEQTVRKVMDEISHKVTLYSTCL
NT seq
5358 nt
NT seq
+upstream
nt +downstream
nt
atgtggatccttcatctcgcgatacttttggccgtgggatggcgggccggggcgatgctc
cccgacttcggggagggctgcaccgtggggagctgctaccccgccacgggggaccttctc
atcggccgcgaggacaagctcagcgtctcctccacctgcggcctggaggaacccgagcgc
tactgcattgtgggacacctcgagggggagaagaagtgcttcacgtgtgactcgaagcac
atgtatgacgagcgactgcaccccgacagccacaccatcgagaacctggtcaccaccttc
gccagcaaccggctgaagacctggtggcagtcggagaacgatatggagaatgtcaccata
cagctggacctggaagccgagttccacttcacgcatctgattatgaccttcaggacgttc
cggccggccgccatggtgatcgagcgctccatgaacttcgggaagacgtggcaggtgtac
cgctactttggctacaactgccagacggcgttcccgggcgtctcccaggggcccatggtc
gacgtggacgacgtcgtctgcgactcgcgctactccgacatcgagccctcgaccgaggga
gaggtgattttccgagtgttggaccctgcctataaaatcgaggacccctacagccctagg
attcagaacctgctgaagatcaccaacctgcgcgtgcgtttctccaagctccacactctg
ggcgacaacctgctcgaccaccgcgacgaggtcacccagaagtactactacgccctctac
gacatggtcgtccgcggcaactgcttctgctacgggcacgccgccaagtgcgccccgatg
gagggggcacgcgagggcgtggagggcatggtgcacggtcgctgtgtgtgtgaacactac
actgagggtctgaactgcgagcgctgccaggacttttaccacgagctgccctggaggccc
gccctgggatacaacaccaacgcctgcaagaggtgtgagtgtaaccaccactcgttcgcg
tgccacttcgacatggcggtatacgtctccacgggcaacatgagcggcggcgtgtgcgag
gcgtgcctccacaacaccaccggacgccagtgcgagcagtgccgccccttcttctaccag
caccccaaccgagacctgagggccccccacatctgcgagccgtgtaactgcgacccagag
ggctccctgcaggggggcatgtgtgacggccgcaccgacgtcagcgcggggctgatctcg
ggtcagtgccgctgtaaggccagcgtggagggggagcgctgtgaccactgccgacaggga
cactacggcctgggacagggggacagcggctgcctgccgtgcacctgcaacgcgctgggc
acgttgccggggggaacgccctgcgacatgcactcagggaagtgcctctgcaagaggctg
gtcgacggggaccactgcgacctgtgtctgccacaacactggggcttggccaatgacatg
gacggctgcagagcatgtgactgcgaccagggcggggctatccacaacaattgtaaccag
cacacagggcagtgtgagtgccaggagcacatgtcggggcggcgctgcgaccaggtggac
tctggcttctacttcatcgccctggaccactacacctacgaggccgaggacgccgcgcac
ggacccggcgtcacggtggtccctcgcccgtccccattggaccggagccctacctggaca
ggtgtgggctttgtcaacgttccggagggcgccttcctggagttcaccatcgacaacgtc
cccgagtccatggactacgacctgctcatccgctacgagccccagctcccggaggagtgg
gagaacgtgaggatccgggtggaccggccggaccccagcctcctggagaccaccagccac
tgcggcacctccgactacctgcagagcggcgacgagcagaccgtcgccctgtcccccggc
tccaggcacgtggagctgggctggcccgtgtgtttggagcagggcctcaactacaccgtg
cgcctcagcctgcctcactactcagcgcacgcacaagtacacaagccccacaccctcata
gactcgctggtgctgatgccgcgggttcaggagctgaacctgttcgagggctcggagggg
gaggcggcctgggacaccttccagaggtaccgctgtctggagagcagccagagcgtggtg
aagagccccgccaccgacatctgcgacgactacatcttcagcgtgtcggcgctgctgcac
cagggcgccatggcctgtcagtgcgacccccagggggcccggtcagccgtgtgcgacccc
agcgggggccagtgccagtgccggcccaacgtcgtcgggcgcaactgcgagcactgctcc
ccggccaccttcctgttcggccctgacggctgcagaccgtgcgagtgcgaccctcgcggc
tcgacccacgccttctgccacgaggccacggggcagtgcgcgtgcgttgccggggcgacg
gggcggcagtgctccggctgcctcccgggtcactggggcttcccccactgccggccgtgc
cactgcaacgggcacagcgccctctgcagcgcccacaccggggagtgcctggactgcagg
gagaacaccgccggacacaactgtgagaggtgcctggttggttaccacggcgaccccgcg
ctggggtccggcgggcactgccgcccgtgcatgtgtcccgacgggccgggcagccggcgg
cagcacgccgacggctgctaccaccgccacgaccaggacctgatggtgtgtgcctgcagg
ccgggatacaaaggtgtcaggtgcgaggagtgcgcccccggtcactacggcgacccccag
gtcccggggggccgctgcatgccctgccagtgcagcgccaacatcgacctgcaggacccc
ggcgcgtgcgacgcgcgctcgggggcgtgcctccgctgcctgcaccacaccgaggggccc
gcctgcgaccgctgccgcgccggctaccacggcaacgccaccacccagagctgcaggaag
tgcatgtgtgagcctctgggctctgctgcgggcgcctgccctgccgagggggggtgccat
tgcgaccgccggacgggccagtgcccgtgccggcccagcgtcctgggccagagctgcgac
cgctgcgcccccgacacctggggcctgggcgggggggagggctgccagagctgcgactgc
gagcccggccacgccttcgggtcctcctgtgatttgctgacaggacagtgctcgtgtaaa
ccaggcttcggtgggaggacgtgtcgggagtgcagagatctgttctggggggatcccaag
gtcaaatgtcacgcctgcgcctgcaaccctcgcggaatcacgggcgagcagtgccaccgc
tcctccggccagtgcccctgcgtggcgggcgtctcgggcccccgctgcgaccagtgcgcc
cgcggctacagcggcgcgttccccgcctgcgagccgtgccacggctgcttcgccctgtgg
gacgtcgcggtgggcgagctgaccaaccagacgcgggctctgagcgggcacgtggccgag
cttcagagcgggggcggggcggtgacggcgccgtaccgggagctggtcggccgcctggag
gccaacgccgccgccgtacgggtcgtcctggagggggacggcgccgtcgcggccctggac
gaggcccgcgagctcatgaaccacatcctcggcgtgatgtcatacctgaacgggatgctc
aacaccaccgacggcgacctgggcagtctccgggaccagggcaacgccacccgcgccacc
ctggaccagctgacggaggaggcgggcgcgctggagcgggcggtgaaggagctgaaggag
caggtgtacaacgccaagaactccaacttccagggagcgatggacaccatctctgaggcg
cacttggactccaccacggctgagctgcaggtcaactcctccaccagtcaccccggcaac
accgtggagcagtcggcggccctacggaaagccaccgaggacgaactgagcggctcccag
aaggagttcgagcgcaaggtggagaggcagacgcagaagctggacaagctggacgcctcg
ctggaggagatggacctctcggagctcagcgtgaagacgtgcggcgccgttgggggcaac
gacgaggcctgctccgggggcccctgcgggggtctgggctgcgtgggggaggacggggcc
ccccggtgcgggggccagacggactgtaagggcctggtggccgcctccgctgccgcccac
aagtcggcccaagacctggacctggagatcgtctccgccatgcaggaggtggagaagctg
tcccgcttggtgtttgatgccaagctgcgtgcgggcgaggccaaggtgaccgcccagcag
gtgctggtcagagccaatcagagcaaggagagggtggagcagagcaacgagcagctgcgg
gccctcatcagggacatacgagacctcctgaccaatggcaaggccaacgtgtcggtggtg
gagatggtgtccaacgaggtgctggccatggagctgcccacctcgtcgtccgagctgcag
aacatgacccgggacatccgggagcgggtcagctctctgaccagcgtggagggcgtcctc
agccagagcgccgaggacatcgccgccgcggagaggctactgctgcaggccaaggccgcc
agtgaggaggcctccaccctgaaggagaccatcgacttggcccgggcggcgctggaggag
gcagacaaagcccagaacctggccagcgacgccatccagcaggccatgcagaacaccaac
agcaccatgaccctgctactctcggtggagtcggtgacggaggcgtcggagttctccctg
agcaacgccacggggcgcctgctgcagctggagcgggaggtcgggctgctgaggcagagc
cacctggaggccagccgcacggccgccggcgccaccgccagcagcgagcgggccaccgag
gacgcagagcaggcccagcaggagttcgacggggcggtgacggagcagtacggccgggct
caggagctggtggaggataagggggaggtggtgctggaggccagacggagggcagacgcc
ctgcagacggaggccaaggagctgctggcccagagcagtgacaagctccagaggctacga
gagctggagcggtcctacgaggtgaaccagcgcaccctagaggacaaggcggaggagctc
gccctcctggagcagacggtgcgcaaggtgatggacgagatcagccacaaggtcacgctc
tacagcacctgcctctga
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