Gadus morhua (Atlantic cod): 115543445
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Entry
115543445 CDS
T10832
Name
(RefSeq) rab11 family-interacting protein 1-like isoform X1
KO
K12484
Rab11 family-interacting protein 1/2/5
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
115543445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gmh04131
]
115543445
Membrane trafficking [BR:
gmh04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
115543445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
RBD-FIP
DUF4635
Motif
Other DBs
NCBI-GeneID:
115543445
NCBI-ProteinID:
XP_030211662
Ensembl:
ENSGMOG00000025282
LinkDB
All DBs
Position
5:20377212..20403251
Genome browser
AA seq
1615 aa
AA seq
DB search
MSSVNSDDEQPQRWVPTHVQVTVLRGRGLRGKGKNGTSDVYTIIQVGKEKYSTCVVEKTT
SPEWKEECSFELLPGVLEEGGRGAYPPGSCDLVLTVMHRALIGLDVFLGQAVIPLDKAFQ
DHIYAKTEAEWVNLRSRWFRLNSKTGKKEKERGEVQATVQFTRNNLTASMYNLAMKDKGH
SAFSKLKERMRGKKRSSVDDDAPAPTPPPSVGGGGGGGSLPRTRLPSDGGGEEEYEDDEG
GEGRRNKMRTFFLRGKLRKSSETRSSTSLGSESSESSSRGGSLSPTAGISVVVSDLSNSP
SNSSNLTADNSPEHTADTSPKLSPDDSEFGDDCHEISIAVPALYRNGGVHHAYHAPPPQP
GPGEPLAPAAAAVAAAAKASPLGLGLHLKPLPTSVSLQNISPREEELPRGAGGAGDGRRW
SFDKPGEDEKAAIAAALEKSGPMVGDDEEEERSRSAAPPPGATGAARESYDRKQQQQQQK
KKKGDSGGRVGSEAAPQEKTGKGWFGSKECNSKPSPRVSPKLGPIPESHSPPLPSVPPPS
QHPSWCSWAPPAPPGSTPPGSPLHPTNPFCHSQCSPPPTPMSPSNPFFSTLQQNPSSGAA
LSDPPLTSRPPPLPYLSSARPPIAHLFSQDPDPVPGLLRERPSPKGRAFGASDATAGGEA
LARLKRRPLPHPPPGEEEEASNGRSPNPFNSVGTAAPELEWDDPFEAFVSCRLQSSDDEP
AGPPDPKNAPAQNSPKGSLVEFWHPDKEEPPKSPDPLKDSDVVQAFPPQPADVFLDTAPE
PWSDGFAQFPTAIPATNQNAGMLLTTSLDSSENHDGDTVTNLANPSSNTDCLTRTTTPGA
LCQHCRCEHNPSIPCEGETLKDRSDSSDPSSSGVGSLAEEDALSSISCSASEKWAACWGE
GVETKSVLDLSEESPEQTVLGLLKDSEDKLIDWSCPVITDHRVEGDLIQVSDPNEKPRSM
VDDLVADDQVLVPPPLISLQHGDGPSKEPGPTHVPLSDLSSKPTNTSIPRDLELEATVSR
TGGANELQESFGDLHEPENFVKAADGDDESVAPHPLETEGTSTCPSFHTVTSFLGDGSSF
LEMPFGTGSLDGQLVRQSSPKTPRLLCPKDGPTMTAPLLVFNESSLVESTLGVSDTEEQL
VLENAPKPPELLDVIASRASPSPDQAFYDPLPGGRWLCPSPGSLLSSSLYGSADSQHYQT
CLTHNSSAATSSASVDPLVERRTSEDLWGSVSTLRGAESCDELSRVLFPENASAPGLEGA
CGAADVDGEAAEVGLFPSEETCLAKGLETCFEPGLGVEDLGSHSDTPIQIGVGSVVNRNH
GSDDQPAGGTQQNAGAPSEDTPPAPTKTECPSTLQRSHSEGAMATGLSGRTLTSFGSDPS
VVPSLRPTDPSGPPDSARTPFLLLFLSPTSCPPAGPPAPLARCSLPSASVTASLPLPTAT
PGPAPEAPPPPEEAHATGVAHASDEPHLKVEKVERPQNSPHPVRPLTPGSLGPEERRGPE
GRSVLEKLRCTIQPGRSSQLSEAEPERRKSLTEGAGSYYHLTHSELVALLVGREADLERQ
KAEFERQTALLSRREVELRRLKPQVRDLENYIDTLLVRIMEQTPTLLQVGTTKFK
NT seq
4848 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcggtaaactcggatgacgaacagccacagagatgggtccccacgcacgtgcag
gtgacggtgctcaggggacggggcttgcggggcaagggcaagaacggcaccagcgacgtg
tacaccatcatccaggtgggcaaggagaagtactccacctgcgtggtagagaagaccacg
tcgccagagtggaaggaggagtgctcgttcgagctgctgccgggggtcctggaggaaggg
ggacggggcgcctaccctcccggcagctgcgacctggtgctcacggtcatgcaccgggcg
ctgattgggctggacgtcttcctgggccaggcggtcatccccctggacaaggccttccag
gaccacatctacgcgaagaccgaggcggagtgggtcaacctgcgctcccgctggttccgg
ctgaactccaagacgggtaagaaggagaaggagcggggggaggtgcaggccacggtgcag
ttcacccgcaacaacctgacggccagcatgtacaacctggccatgaaggacaagggccac
tcggccttcagcaagctcaaggagcgcatgcgcggcaagaagcgctcctccgtggacgac
gacgccccggcgcccacccctcccccgagcgtcggcggcggcggcggcggagggtcgctg
ccgcgcacccggttgcctagcgacggcggcggggaggaggagtacgaggacgacgagggc
ggagagggccggaggaacaagatgaggacgttcttcctgcgcgggaagctgcggaagtcg
tcggagacgcgctccagcacctcgctgggctcggagagcagcgagtcgtcgtcgcgcggc
ggcagcctcagccccacggcgggcatcagcgtggtggtctccgacctctccaactcgccc
agcaacagcagcaacctgaccgccgacaacagccccgagcacacggccgacacctccccc
aagctctcccccgacgacagcgagttcggcgacgactgccacgagatcagcatcgccgtg
cccgccctgtaccgcaacgggggggtccaccacgcctaccacgccccgcccccgcagccc
ggcccgggtgaacccctagcgcccgcggcggcggcggtggcggcggcggcgaaggcgtcc
cccctgggcctgggtctgcacctcaagcccctccccacctccgtgtccctgcagaacatc
agcccccgcgaggaggagctccccaggggggcgggcggcgcgggtgacgggcgccgctgg
tccttcgacaagcccggcgaggacgagaaggcggccatcgcggcggcgttggagaagagc
gggccgatggtcggcgacgacgaagaggaggagcggtcgaggagcgcggcgccgccgccg
ggcgccaccggggcggcgagggagagctacgaccggaagcagcagcagcagcagcagaag
aagaagaagggcgactctggcggcagggtcgggtcggaggcggccccccaggagaagacc
ggcaagggctggttcggctcgaaggagtgcaacagcaagccaagcccccgggtgtcccct
aagctagggcccatccccgagtcccactccccaccgctaccgtcagtgccccccccgtcc
caacacccttcctggtgctcctgggctcctcctgcacccccaggatcaacccccccgggc
tccccactgcaccccactaaccccttctgccactcccagtgcagcccaccaccaactccc
atgtcacccagtaaccccttcttctccacactccagcaaaacccctcttccggggcggcg
ctctccgacccgcctctaacgtcccggcctccgcctctgccttacctctccagcgcccgg
cctcccatagctcacctcttctcccaggaccccgaccccgtccccggcctgctgcgcgaa
cgtccgtccccaaagggacgcgcgttcggcgcctcggacgcaaccgccggcggagaagcg
ttggctagactgaaacggaggcccctcccacatcctcccccaggcgaggaggaggaggct
tcgaatgggaggtccccgaaccctttcaactctgtcggcaccgcggcgccggagttggag
tgggacgatcccttcgaggcgtttgtgtcctgcaggctgcagtcgtccgacgacgagccc
gctggaccaccggaccccaagaacgccccggcccagaactcgccgaaaggttctctcgtg
gaattctggcaccctgacaaagaagaaccgcccaagtctccggatcccctcaaagactct
gacgtggttcaggcattccccccccaacccgcggacgtctttttggatacggccccggaa
ccctggtctgatgggtttgcacagttccccaccgccatcccagcgaccaatcagaatgcc
ggcatgctgctaaccacctccctagattcatcagagaatcacgacggggatactgtcact
aacctagctaacccttcctctaacactgattgtttaacacgcactactacgcccggagcc
ctgtgtcagcactgccggtgcgaacacaacccctccatcccctgtgagggcgagacgctg
aaggaccgcagcgactcctccgatcccagttcgtccggagtcggaagtttagccgaggaa
gacgctctctcgagcatatcttgttcagcctcggagaagtgggccgcttgttggggcgag
ggagtcgagacgaagagcgtcctggatctcagtgaagaatcgcctgagcagaccgtcctc
ggtctcctgaaagactcggaggataagctcatcgactggtcatgtcctgtcattactgat
catagagttgagggagatctaattcaggtaagcgatccgaatgagaaaccacggtctatg
gtagatgatttggtagctgatgatcaggtgttggtcccaccacccctgatttccttgcaa
catggagatggaccgtctaaagaaccaggtcctactcatgtcccactgtctgacctatcg
tcaaagcctaccaacacctctattccccgagacctagaactagaagccacggtgtccaga
acggggggagcaaatgagctccaagaatcttttggggatcttcacgagccagagaacttt
gttaaagccgccgatggcgacgacgagtctgttgcgccacaccctctggaaaccgaagga
acttccacctgcccttccttccacacggtgacctcgtttttgggtgatggatcgtccttc
ctggagatgccgtttggaaccggcagcctggacggtcagctcgtccgtcagagctctccg
aagacaccccgactcctctgtccgaaagacggcccgacgatgaccgctcccctcctggtc
ttcaacgagtcctccctcgtggaaagcacgctcggcgtcagcgacacagaggagcagctc
gtcctcgagaacgccccaaaaccgccggagctcctcgacgttatcgccagccgggcatcg
ccgtccccagaccaggccttctatgaccccctgccgggcgggcggtggttgtgtcccagc
ccgggaagcctcctcagcagcagcctgtacggcagcgccgattcccagcactaccagacc
tgtctgactcacaactcctccgcggcgacctcgtcggcctcggtggaccccctggtggag
cgtcgaacgtcggaggacctgtggggctccgtctccacgctgcgcggcgccgagagctgt
gacgagctcagtcgggtcctcttcccggagaacgcgtccgctccgggactagagggtgcg
tgtggagcagcggacgtcgacggagaggcggcggaagtggggttgtttccgtctgaagaa
acgtgtcttgctaaaggattggagacatgttttgaacccggtttaggcgtcgaggacctc
ggttcccattcagacacaccaattcagattggcgtgggttcagtcgttaaccgtaaccat
ggaagtgacgaccagccggcgggaggaacccagcagaacgcgggagcgccatcggaggac
acgccacccgcccccacgaagaccgaatgcccttccacgctccaacgctcccactccgag
ggcgccatggcgaccggcctctccgggcgcaccctgacctccttcgggagcgatccaagc
gtggtcccatccctccgcccaaccgacccctctgggccccctgactccgcccgtaccccc
ttcctcctcctcttcctctctcctacttcctgtccgcccgccggaccgcctgctccttta
gcgcgctgctccctccctagcgcttccgtcaccgcttcgctgccgctgccgacggcaacg
cctggccccgcccccgaggctccgcccccgccggaggaagcgcatgcgacgggtgtggcg
catgcgagcgacgagccgcatttgaaggtggagaaggtggagcgaccgcagaacagcccc
caccccgtgcgacccctgaccccgggctccctggggccggaggagaggaggggccccgag
ggacgctcggtgctggagaagctgcgctgcaccatccagcccggccgcagcagccagctc
agcgaggcggagccagagaggaggaagtccctgacggagggggcgggctcttactaccac
ctgacccacagcgaactggtggcgctgctggtggggcgggaggcggaccttgagaggcag
aaggcggagtttgagcggcagacggcgctgctgtcgcggcgcgaggtggagctgcggcgg
ctgaagccgcaggttcgagacctggagaactacatagacactctgctggtccgcatcatg
gagcagacgcccacgctcctgcaggtcggcacaaccaagttcaagtga
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