Gadus morhua (Atlantic cod): 115543520
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Entry
115543520 CDS
T10832
Symbol
shprh
Name
(RefSeq) E3 ubiquitin-protein ligase SHPRH isoform X1
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
gmh Gadus morhua (Atlantic cod)
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gmh04121
]
115543520 (shprh)
Enzymes [BR:
gmh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115543520 (shprh)
Ubiquitin system [BR:
gmh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
115543520 (shprh)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-1st
SHPRH_helical-2nd
Linker_histone
Helicase_C
zf-RING_UBOX
zf-C3HC4
PHD
zf-RING_2
zf-C3HC4_2
zf-RING_5
zf-C3HC4_3
GntR
TPR_10
TPR_12
Motif
Other DBs
NCBI-GeneID:
115543520
NCBI-ProteinID:
XP_030211751
Ensembl:
ENSGMOG00000016082
LinkDB
All DBs
Position
5:3621687..3639220
Genome browser
AA seq
1666 aa
AA seq
DB search
MSSRRKRAPPVRVDDEAKKKLNWNMLEDRQREGEVLQTDDPMPSCSATPAPPVCALLTPG
GSAPERGEGEEELHGTSSDATVALLSDSLSLSVLPTSTLAPAWKSLIGEFSLKPARVLDP
DRQHGAFTLRRTGQRVFLRYSSHEESSGEPGKAPEEEEQEGEIVCTQEHSLGSVQLEDIE
WLQKRGVVQLCHQTKGEAIQVGIYLLEAGISKPEFLGEGNSRLKKANQLMQKLMEHFYDF
IIPEVVETEEVDCDTDLERQNVEELYDCVRHLHLRQEQQRGDQKPLYDVQHTALIPVLRP
YQSQAVNWMLRRERYRLSSPKEPSLHFLWREVVTLCGKKLYYNPFTGCLMREFPLAGPQW
PGGILADEMGLGKTVEVLALILSHSRQGLEPDTLTLPLGKSVNYFVPPPQLEKEEVIHCK
SEALPKVRISYPTVRVMLLTAIKEMRSGKGASTNGIFTYVRSTYGYDLLKNRNHIRRALV
KLIDEGLVDRVKGRGLAGSFRLGKKYKEKKTTVATPTKSPSKNKDAPPRRTSQRRAEEKV
DYVSPASPGEDPEPQWSEDATPRLERAEQSDDGPLVDSSQALLSSQMAVDETRVTSPQRD
GRKVATRGETGYLQEERTRPVPQVETPATRASLTPFNTPAYRFECICGELGLVDYKARVQ
CMNCQLWQHAQCVNYKEESRETTPFYCPHCLVAMTPVPTGATLIISPSSICHQWVEEIKR
HISSSSLRVLVYHGVKRHGFIQPRMLAEQDVVITTYDVLRSELNYVDIPHSNSKDGRRFR
NQKRYMAVPSPLVAVEWWRICLDEAQTVECTTAKAAEMALRLASVNRWCVSGTPVQRGLE
DLYGLVLFLGVDPYWVKHWWDHLLYRPYLRGNTEPLYSVIAQLLWRSAKKDVIDQIQIPP
QTEEVHWLRFSPVEGHFYHRQHEVCSQDALAQLRKISDWSLKLGSLDRRTVTTILYPLLR
LRQACCHPQAVRGEFLPLQKSTMTMEELLKSLQKKCRVECEEAHRQLVCAFNGLAGIHII
RDEFAEAVEMYREVLRSSEEHKDRLKTDSLQRLHATHNLMELLSAKHAGIPPTLRDDRLS
EEAEHLRQHYMTKYNAEVSDAQQALRPVLHKVSELKRKVNLRSPWWMDVLQNAIQNSIDE
DLVSRVHNELSSSYKQQPNKFTMADKFRDGRGLQLILCTQTDELMRSQKTVQEAVKKLEG
PASKDVIEEATICHLRPVRLPLNNCVFCKADELFTNYESKLFSHTVKGQKAFFEEMIEDE
EGLVDDRLPTTSRGLWAASETERTLKAVLTFAKARRMDPLLVEEGNAFMELFENWKKEYK
VLHEYWMVLRNNVSAIDELGMATERLRVRLPEEPKPKVLHIIEPHEVETNRAKLVNDRAL
AQSQLHKKLGQLLYLNNLEKSQDKETGGLNPEPCPICARPLGQEWAVLTCGHCFCNECIS
IIVEQYSVGSRRRAIKCAICRQTTAHAEISYVFTCEASSRNQDIPVKGSHSTKVEAVVRT
LKKIQLTDPGAKCLVFSMWQCVLDIISKALFDNTMEFSQINGIHKFQENLSSFKHEEKIN
ILLLPLHTGSNGLNIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTFVHRFLIKSTI
EERMQAMMKMADKSHSAAAAMKHSEASVLTVADLADLFTEDGAPLG
NT seq
5001 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaggagaaaacgcgctcccccggtcagggtggacgacgaggccaagaagaag
ctaaactggaacatgcttgaggatcgccagagggaaggtgaagtcctccagacggacgac
ccgatgccaagctgctcagcaacaccagcacccccagtgtgcgctctccttacccccggc
ggatctgccccagaacgaggggagggagaggaggagctccatgggacgtcctcggatgca
acggtcgctttattgtcggactctctgtcgctctcggtgcttcctacttcgacgctggct
cccgcctggaagtcgctgataggcgagttcagcctcaaacctgctagggtccttgatcct
gaccggcagcacggagcgtttaccctgcgcaggacaggacagcgggtgtttctccgttac
tcgagccacgaggagagctctggggagccggggaaagccccagaggaggaggagcaggag
ggggagattgtgtgtacccaagagcacagccttggtagtgtccagctggaggacatcgag
tggctgcagaagagaggggtggtacagctctgtcaccaaaccaaaggagaggccatccag
gtggggatatacctgctggaggcggggataagcaagccagagttcctgggcgaggggaat
tctaggctaaagaaggctaaccagctaatgcaaaagctaatggagcatttctatgacttc
attataccagaggtggtggagacggaggaggtggactgcgacaccgacctggagcgtcag
aacgtggaggagctctacgactgcgtcaggcacctccacctgcgccaggagcagcagcgg
ggagaccagaagcccctgtacgacgtccagcacacggccctcatccccgtgctgagaccc
tatcagagccaggctgtcaactggatgctgaggagggagcgatacaggctcagctccccc
aaagaaccatcgctacactttctctggcgtgaggtggtcactttgtgcgggaagaaattg
tactacaaccccttcactggctgtctgatgcgggagttcccgctggcggggcctcagtgg
ccgggggggatcctggcagacgagatgggcctggggaagaccgtggaggtcctggccctg
atcctgtcccacagccggcagggcctggagcccgacaccctcaccctacccctggggaag
tctgtgaattacttcgtacctccaccacagctggagaaggaggaagtcatccactgcaaa
tcagaagctctaccaaaagtcaggatctcctaccccactgtgcgcgttatgctgctcacc
gccatcaaggaaatgcgctctggcaagggggcgtcgaccaacggcatcttcacctacgtc
cgctccacgtacggctacgacctcctgaagaaccgcaaccacatacggcgagcgctggtc
aagctgatcgacgaaggcctggtggacagggtcaagggtcgcggcctagccggatccttc
cggctggggaagaagtacaaggagaagaaaaccacggttgccacgccgactaagtctcct
tccaaaaacaaagatgccccgcccaggaggacctcccagcggcgagcggaggagaaggtg
gactacgtctcgccggcgtccccgggagaagacccggaaccccagtggtccgaggacgcc
acgccgcggctggagcgcgccgaacagtcagacgacggcccactcgtggacagctcccag
gcattgctatcctctcagatggcggtggatgaaacacgggtaacgtcgcctcagcgcgac
ggacgcaaagtggcgacccggggagaaaccggctatctgcaggaggaacgcacacgcccc
gtcccacaggtggagacgcctgcgacccgggcttccctcacgccgttcaacacgccagca
taccgcttcgagtgcatctgcggcgagctggggctcgtggactacaaggcccgggtgcag
tgtatgaactgccagctgtggcagcacgcccagtgcgtcaactacaaggaggagagccgg
gagaccacgcccttctactgcccccactgcctggtcgccatgacgcccgtccccaccggc
gcaaccctcatcatctcccccagctcaatctgccaccagtgggtggaggaaatcaagcgc
cacatcagctcctcctcgctgcgagtgctggtgtatcatggcgtgaagcggcacggcttc
atccaaccccgcatgctggcggagcaggacgtggtcatcaccacctacgacgtgctgcgc
tcggagctcaactacgtggacatcccacacagcaacagcaaggacggtcggcgcttccgc
aaccagaagcgctacatggccgtgcccagccccctggtggccgtggagtggtggcgcatc
tgcctggacgaggcccagacagtggaatgtaccaccgccaaagcagcagaaatggcgttg
cgtcttgcatcggtcaaccgctggtgtgtcagtggaactccagtccagagaggcttagag
gatctctacggtctcgtgcttttcctcggcgtcgacccctactgggtgaaacactggtgg
gaccatctgttgtaccgcccctatctccgcggcaacacggagcccctgtacagcgtgatc
gctcaactgttatggcgatcggctaaaaaggacgttattgaccagatccagatcccccca
cagacggaggaggtgcactggctgcgcttctcccccgtggagggccacttctaccaccgg
cagcacgaggtctgctcccaggacgccctggcgcagctccgcaagatctctgactggagc
ctgaagctgggcagcctggaccgccgcacggtcaccaccatcctctacccgctgctgagg
ctccggcaggcctgctgccacccgcaggccgtccgtggggagttccttcccctgcagaag
agcaccatgacgatggaggagctcctaaagtccctgcagaagaagtgtcgagtggagtgt
gaggaggctcaccgacagttggtgtgtgctttcaacgggctggcgggcattcatatcatc
cgagatgagtttgcggaggcggtggagatgtacagagaagtgttgcgttcgtcagaggaa
cacaaagatcggctgaaaacagactccttgcagaggctccacgccacccacaatctgatg
gaactgctgagtgcaaagcatgctgggatacctcctactctcagagacgaccgcctgagt
gaagaggcagagcatctccggcagcactacatgaccaaatacaacgctgaggtttcggac
gcgcagcaggccctccggcctgtgctgcacaaagtcagcgagctcaaacgcaaggtgaac
ctgcgctccccgtggtggatggacgtcctccagaatgcgatccagaactccatagacgag
gacctggtgtctcgggtccacaacgagctctccagcagctacaagcagcagcccaacaag
ttcaccatggccgacaagttccgggatgggcgtggcctgcagctgattctgtgcacgcag
acagacgagctgatgaggtcacagaagacggtgcaggaggctgtgaagaagctggaaggt
cccgcctccaaggacgtcatagaagaggccaccatttgtcacctgaggcccgtacgcctg
ccactcaacaattgtgtcttctgcaaagccgacgagctattcacaaactatgaatccaag
ctgttctctcacacggtcaaaggtcagaaggccttcttcgaggagatgatcgaggatgag
gagggtttggtggacgaccggctccccaccaccagccggggcctgtgggccgccagcgag
acagagcgcaccctgaaggcggtgctcaccttcgccaaggcccggcgcatggaccccctg
ctggtggaggaggggaacgccttcatggagctgtttgagaactggaagaaggaatacaag
gttctgcatgagtactggatggttctgcggaacaacgtgtcggccatcgacgagctgggc
atggccacggagcggctccgcgtacggctccccgaagagcccaaacccaaggtcctccac
atcatagaaccacacgaggtggagacgaaccgagcgaagctggtgaacgaccgtgcactg
gcccagtcccagctccacaagaagctgggccagctcctctacctcaacaacctggagaag
tcccaggacaaggagaccgggggtctcaaccctgaaccatgtccgatctgcgcacggccc
ctgggacaagagtgggcggtgctgacgtgcggccactgcttctgcaacgagtgcatctcc
atcatcgtggagcagtacagcgtgggctcgcggcgccgcgccatcaagtgcgccatctgc
cggcagaccacggcgcacgccgagatctcctacgtgttcacctgcgaggcctccagccgc
aaccaggacatccccgtcaaggggagccattctaccaaagtagaagcggttgtgaggacc
ctcaagaagatccaactgaccgaccctggggccaaatgccttgttttctccatgtggcag
tgtgtcctggacatcatctccaaggccctgttcgacaacaccatggagttctcccagatc
aacggcatccacaagttccaggagaacctgagctccttcaagcacgaggagaagatcaac
atcctgctgctcccgctgcacacgggctccaatggcctcaacatcatcgaggccacgcac
gtcctattggtggagcctatcctaaaccccgcccacgagctgcaggcgatcggccgcgtc
caccgcatcggccagaccaagcccacgtttgttcaccggttcctcatcaagtccaccatc
gaagagagaatgcaggccatgatgaagatggccgacaaaagccacagcgccgcggcggcc
atgaagcactcggaggcgtccgtgctgaccgtggccgacctcgccgacctcttcacagaa
gacggggcaccactaggctag
DBGET
integrated database retrieval system
