Gadus morhua (Atlantic cod): 115543580
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Entry
115543580 CDS
T10832
Symbol
pabpc4
Name
(RefSeq) polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03015
mRNA surveillance pathway
gmh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115543580 (pabpc4)
09123 Folding, sorting and degradation
03018 RNA degradation
115543580 (pabpc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmh03019
]
115543580 (pabpc4)
03041 Spliceosome [BR:
gmh03041
]
115543580 (pabpc4)
Messenger RNA biogenesis [BR:
gmh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
115543580 (pabpc4)
mRNA cycle factors
Stress granule specific factors
115543580 (pabpc4)
Spliceosome [BR:
gmh03041
]
Complex C
Other components
Complex C specific factors
115543580 (pabpc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_occluded
RRM_10
RRM_7
RBD_RDR6
ApbA_C
POP1_C
Motif
Other DBs
NCBI-GeneID:
115543580
NCBI-ProteinID:
XP_030211841
Ensembl:
ENSGMOG00000019025
LinkDB
All DBs
Position
5:complement(8934353..8943643)
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AA seq
629 aa
AA seq
DB search
MNTATTGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNF
SQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTF
SAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKER
EAELGAKAKEFTNVYIKNFSDDMTDDQLKVLFDQHGRTLSVKVMTDPSGKSRGFGFVSYE
KHEDANRAVEEMNGTEVQGKTVFVGRAQKKMERQAELKRRFEMLKQERISRYQGVNLYIK
NLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVG
SKPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANAIINQFQPASGYFMPAVPQVGQAQ
NRTTYYAPNQMAQMRPNPRWQQQGGRGQGGFQGMPGSLRQPGPRGNMRHMSPNSNAPRGG
AQPMGPRPSMGVAAPRAMPPYKYASGVRNPNPQGVQPIALQQAQPAVHVQGQEPLTSSML
AAAPPQEQKQMLGERLFPLIQSMHASLAGKITGMLLEIDNSELLHMLESQESLRSKVDEA
VAVLQAHQAKKDATQKVGGLTSTAPAASS
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgaacactgcgacaaccgggagttatccaatggcttctctctatgttggcgatctgcac
cccgatatcacggaggctatgctgtacgagaaattcagcccagctggaccggtgctctcg
attcgggtatgccgggatatgatcaccagacgttctctgggttatgcctacgtgaacttc
tcccaacctgctgacgcggagagagccttggacaccatgaactttgacgtggtgaagggg
aagcccatccgaattatgtggtcccaaagagacccctcgctcaggaaatccggcgtgggc
aacgtgttcatcaagaacctggacaagtcgatcgacaacaaggccctctacgacaccttc
tcggccttcggcaacatcctctcatgcaaggtggtgtgcgatgagaacggctccaaggga
tacgcctttgtgcactttgagacccaagatgcggccgaccgtgccattgagaagatgaac
gggatgctgctcaatgaccgcaaggtgttcgtaggtcgtttcaagtctcgcaaggagcgg
gaggctgaactgggggccaaagccaaggagttcaccaatgtctacatcaagaactttagt
gacgatatgactgacgaccagctgaaagtgctcttcgaccaacacggtagaacgctcagt
gtgaaggtaatgacagacccctccggcaaatccagaggctttggatttgttagttatgag
aaacatgaggacgccaacagggcggtggaagaaatgaatggcacagaggtccagggcaag
actgtgtttgtgggtcgcgctcagaagaagatggagcgccaggctgagctaaagaggcgg
tttgagatgctaaaacaggaacgcatcagtcgctaccagggtgttaacctgtacatcaag
aaccttgatgacaccatcgatgacgagaaactgcgcaaggagttctctccattcggatcc
atcaccagtgcgaaggtcatgctggaggagggccgctccaaggggttcggcttcgtctgc
ttctcctccccggaggaggccaccaaggccgtgaccgagatgaacggccgcatcgtgggc
tccaagcccctctatgtggccctggcccagcgcaaagaggagcgcaaggcccacctcacc
aaccagtacatgcagcgcatcgccggcatgagggccctgcctgccaacgccatcatcaac
cagttccagcccgccagtggctacttcatgcccgccgtgccccaagttgggcaggcgcag
aacaggaccacttactacgcacccaatcagatggcccagatgagacccaacccacgttgg
caacagcaaggtggacggggtcaagggggcttccagggaatgccgggctccctgcggcag
ccgggaccccgcggcaacatgagacacatgtcccccaactctaacgccccgcgaggtggc
gcccagcccatgggtccccgtccctccatgggggtcgcagctccccgggccatgccaccc
tacaagtacgcctccggggtgcggaaccccaacccccagggcgtgcagccaatcgcctta
cagcaggctcagccagcagtacatgtgcagggacaggaacccctgacatcctccatgctg
gcggccgctcctccccaggagcagaagcagatgctgggggagcgtctcttccctctcatt
cagtccatgcatgccagcctggcagggaagatcaccggcatgctgctggagatcgacaac
tcagagctgctgcacatgctggagtcccaggagtcgctgcgctctaaggtggacgaggct
gtcgctgtcctgcaggcgcatcaggccaagaaagatgccacacagaaagtcgggggcctc
acttccactgcacctgctgcctcctcctaa
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integrated database retrieval system
