Gadus morhua (Atlantic cod): 115543943
Help
Entry
115543943 CDS
T10832
Symbol
rpap1
Name
(RefSeq) RNA polymerase II-associated protein 1
KO
K20826
RNA polymerase II-associated protein 1
Organism
gmh Gadus morhua (Atlantic cod)
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmh03021
]
115543943 (rpap1)
Transcription machinery [BR:
gmh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
115543943 (rpap1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPAP1_C
RPAP1_N
Motif
Other DBs
NCBI-GeneID:
115543943
NCBI-ProteinID:
XP_030212505
Ensembl:
ENSGMOG00000011108
LinkDB
All DBs
Position
5:complement(13012286..13034841)
Genome browser
AA seq
1418 aa
AA seq
DB search
MLQRPKPSDSEADLLKEQERFLVSGAPLAAKVIRRPDKRRGGGDGGGGGGGGECQRDIVT
IEDLPDDMPSLTPAPSKKSCSKENRVRFEDQDTEEVLDKHDTHISAVLSRIVERDTSSSL
VSLPTFSGTAFPRVLHRTEPDSKVPAAAAGGRRSIFARQIAAEKLKEASGPSGRAARGPS
PPVETSMDTHLSPAARGPLREASGPRLPSGPRLLSGEGLGGPDRSAETLRIHQENQAMLQ
TMSRGEILEEQRKLLAQLDPRLVDFIKAGRSHQDPAPPGSGEDHQHGGVARDSTAKSVPS
PSESQQEEEMEREEEEELDQEDEEPSPMPPITEEDLPLKPEKQWVHMGKLEPDKLEWTRD
LPGPRRKGTQKAMQARFDFAGSLISPHEDLPTHLGLHHHGEEPELAGYSLQELFLLSRSQ
VIQQRSLSLNTLASILTKARAGQFASALSGSVMTTLLDAGLLFLLRFALDDNVEGVMAAA
AHAIRALLVSDQDEAFLDHSFSWPGGLASFPLLPCSTEEQEEEEEEEQGLPENMRLSAKE
KEERRNDHDVARHDVVKGLLRTGLLSRLRYILEVVRPSPRVVQDLLAVLTRISRHSSHAA
TQVLDCPRLMDVVMSEFLPTSWSAPSLHPPPSVYGLPLAGALKLLRVLATSGRHACARLL
SSLGVRERLSRLLSPEPGELLLESGQALRVSAEAFRLWAVAASYGQACDTYIELYSVLLR
ALQAVTRDLDSSGPLLAPQRQRVQALLALLTQVTHSAGCHQELHAAMLRSPGPEDPAPPP
PPPVSWGHVGGLQAPLVGQLKGLVAGLDGPAGRRESSLALIPGYLHCLGAHYHQLPKQNC
FKPVDTLQELERLTSEVLQPLMSHSAVQHVVTNLQSCSAVCDLQGHGPGPEAVPSLPGLA
SAGWKDGPGLAVPSSPFPLLTALCVLLDSITGIHKGLSSKFSGLLVSEPVIGYLGSCCRA
TPNLSNASAWVLRHEHHLLYLLVRLAHRVAPKDPAVARHASLYHQVAMALLPWLLPGSEH
LAHDLLCSVVFSKDFLPESHSGGPEALELAELKLHAGAPHLQAVGPLLREACVQLPSLRG
CYLGHLAHLEPSVLGSKDAYLGRTPWVRSRLLPELGPGPALPADWPYLPLVTLYERTGGG
ELQVEELPRGALQAVTHCLQWLLLLEVWREGALKAVTPVAKLARLSCVFLSASDLFLERP
VQRLLWALLRLLTRPDRLDSLDLDVAPPGLASFQDLFSALLVQYEAVSFGDPLFGCWLLL
PLQRRYSAAMKLAVFGEHVGALRSLGVTLEQLSLPLERYTSPPEASLPLLQLYFRSLVTG
GLLQARCPLLYTVALAHLNAFLFSEGPAQQAVEAAQRSMLRKVYHLTDQVLKDHLLLFRG
PQQDSALGFHTYQQLPPDRAQRLERALGTPDSSHGGTH
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atgctgcagcgtccaaaacccagcgactctgaggcagacctcctcaaagagcaggagcgg
ttcctggtctctggtgctcctcttgcggctaaagtgatccgaaggccagacaagaggaga
ggaggaggagatggaggaggaggaggaggaggaggagaatgccagagagacattgtcacc
atagaagatctccctgatgacatgccttctctaacaccggcaccatcaaaaaagtcttgc
tctaaagaaaaccgcgttcgctttgaagaccaggatacggaggaggttctagacaagcat
gacactcacatcagcgctgtgctttctaggattgttgagcgagacaccagctcaagcctg
gtctctctgccaacattctctggaactgcatttcccagagtccttcaccgcacagaacca
gatagcaaggtcccagcggccgcagcaggcgggaggaggagtatatttgcccgtcagata
gccgctgagaagctcaaggaggccagtggtccatcgggccgtgcagccagagggcccagc
ccccccgtggagaccagcatggacacacacctttctcctgcagcacgcggcccgctgagg
gaagcttcgggccccaggctgccctcgggccccaggctgctgtcgggcgagggcctgggg
ggtccagaccgctcggcggagaccctgaggatccatcaggagaaccaggccatgctgcag
accatgtcccggggagagatactggaggagcagcggaagctgctggcccagctggacccc
aggctggtggacttcatcaaggctggccgatcccaccaggaccccgctcccccaggctcc
ggtgaagaccaccaacatggaggagtcgctagggacagcacagcgaaaagtgttccctcc
ccgtcagaatcacagcaggaggaggagatggagagagaggaagaggaggagctagatcag
gaagatgaagagccatcaccgatgcctcccatcacagaggaggatctcccgctgaagccc
gagaagcagtgggtccacatgggcaagctggagccggacaagctggagtggaccagagac
ctgccaggtcccaggaggaaggggacccagaaggccatgcaggctcgctttgacttcgcc
ggctccctgatctccccccacgaagacctgcccacccacctgggtctgcaccaccacgga
gaggagcccgagctggcgggttactctctccaggagctcttcctcctgtcccggagccag
gtcatccagcagaggagtctgtccctcaacaccctggccagcatcctcaccaaggcgcgc
gccgggcagtttgcgtcggcgctgagcgggagcgtgatgaccacgctgctggacgccggc
ctcctcttcctgctgcgcttcgcgttggacgacaacgtggagggggtgatggcggcggcg
gcgcacgcgatcagagccctgctggtgtcagaccaggacgaggccttcctggaccacagc
ttctcctggccgggtggcctggcctccttccccctgctgccctgctccacggaggagcag
gaggaggaggaggaggaggagcagggcctgccggagaacatgaggctgagcgccaaggag
aaggaggagcggaggaacgaccacgatgtcgcccggcatgacgtcgtcaagggcctgctg
aggacggggctgctgtcccggctgcgctacatcctggaggtggtccgcccctctccgcgg
gtggtccaggacctcctggcggtgctgacccggatcagcagacactcctcccacgcggcc
acgcaggtgctggactgccctcgtctcatggatgtggtgatgtccgagttcctgcctact
tcctggagcgctccgtctctgcacccgcccccgtctgtgtacggcctcccattggctggg
gccctgaagctcctcagggtattggctacctcggggaggcacgcctgcgcccggctgctg
agctctctgggcgtgagggagcgtctctcccgcctgctgagccccgagcccggggagctg
ctgctggagagtggccaggcgctgcgggtctccgctgaggccttcaggctctgggccgtg
gcagccagctacgggcaggcctgcgacacctacatagagctgtactcggtcctgctgcgg
gcgctgcaggctgtgacccgggacctggactcctcggggcccctgctggccccccagcgg
cagagggtgcaggccctgctcgccctgctcacccaggtcacccacagcgcagggtgccac
caggagctgcacgccgccatgctcaggagcccgggccccgaggaccccgcgcccccccct
ccccccccggtgtcctggggccacgtgggcgggctgcaggcccccctggtggggcagctg
aaggggctggtggcaggcctggacgggccggcggggaggagggagagcagcctggctctc
atccctgggtacctgcactgcctgggggcgcactaccaccagctccccaagcagaactgt
tttaagccagtggacacactccaagagctggaacggctcacatcagaggtgctgcagcca
ctgatgtcgcacagtgccgttcaacacgtcgttacaaatctccagtcatgctccgccgtt
tgtgacctccagggtcatggtcccggtccggaggccgttcctagtctgcctggattggcc
agcgcgggatggaaggacggcccgggattggctgttccctcgtctcccttccctcttcta
acagcgctttgcgtccttctggactccatcaccggcatccataaaggcctcagcagcaag
ttcagcggtctcctcgtatcggagcctgtgattggctaccttggtagctgctgtcgggcc
acgcccaatctgtcaaacgccagcgcctgggtcctacgtcacgaacaccacctgctctac
ctgctggtccggctggcccaccgagtggctcctaaggatccggccgtggcgcggcatgcc
tctctgtaccaccaggtggcgatggcgctgctcccctggctgctgccgggcagtgagcac
ctggctcacgacctgctgtgctccgtcgtcttcagcaaggatttcctcccggagagccac
agcgggggaccggaggccctggagctggcggagctgaagctgcacgcgggggccccccac
ctgcaggcggtggggcctctcctccgcgaggcctgcgtccagctgccgtccctccggggc
tgctacctgggccacctggcccacctggagccctccgtcctgggctccaaggacgcctac
ctgggccgcaccccctgggtccgctcccggctgctcccggagctggggccggggccggcg
ctgcccgccgactggccctacctgccgctggtcaccctgtacgagcggacgggcgggggc
gagctgcaggtggaggagctgccccgcggcgccctgcaggccgtcacccactgcctccag
tggctgctgctgctggaggtgtggagggagggggcgctgaaggcggtcacccccgtggcc
aagctggcgcgcctgtcctgcgtgttcctgagcgccagcgacctgttcctggagaggccc
gtccagcggctgctctgggccctgctccggctgctcaccaggccggaccgcctggactcc
ctggacctggacgtggcgccgccgggcctggcctccttccaggacctgttctcggcgctg
ctggtgcagtacgaggcggtgtcgttcggggaccccctgttcggctgctggctgctgctg
cccctgcagcggcgctacagcgcggccatgaagctggccgtgttcggggagcacgtgggg
gcgctgcgctccctgggcgtcacgctggagcagctgagcctgcccctggagcgctacacc
tccccgcccgaggcctccctccccctgctgcagctctacttccgctccctggtgacgggg
ggcctgctgcaggcccgctgccccctgctgtacaccgtggccctcgctcacctcaacgcc
ttcctcttctccgagggccccgcccagcaggcggtggaagcagcccaacgcagcatgctg
aggaaggtctaccacctgaccgaccaggtgctgaaggaccacctgctgctgttccgcggg
ccccagcaggactctgcgctgggcttccacacgtaccagcagctgcctcctgatcgggcc
cagcggctggagagggccctgggcacgccggacagcagccatggagggacacactga
DBGET
integrated database retrieval system
