Gadus morhua (Atlantic cod): 115543958
Help
Entry
115543958 CDS
T10832
Symbol
hif1a
Name
(RefSeq) hypoxia-inducible factor 1-alpha
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh04137
Mitophagy - animal
gmh04140
Autophagy - animal
gmh04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
115543958 (hif1a)
04137 Mitophagy - animal
115543958 (hif1a)
04148 Efferocytosis
115543958 (hif1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gmh03000
]
115543958 (hif1a)
Transcription factors [BR:
gmh03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
115543958 (hif1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
HIF-1a_CTAD
PAS_11
HIF-1
PAS
PAS_4
PAS_9
HLH
Motif
Other DBs
NCBI-GeneID:
115543958
NCBI-ProteinID:
XP_030212535
Ensembl:
ENSGMOG00000010900
LinkDB
All DBs
Position
5:12715643..12734800
Genome browser
AA seq
774 aa
AA seq
DB search
MDTGIVPEKKRVSSDRRKEKSRDAARCRRGKESEVFYELAQELPMPHSVRANLDKASIMR
LTISYLRMMKLLGTDGPVAEAAPEESELGARLSGSYLKALEGFLMVLSEDGDMIYLSENV
HKCLGLAQFDLTGQSVFDYTHPCDQEELREMLVHKTGSKKTKEPSTERTFFLRMKCTLTS
RGRTVNVKSATWKVLRCSGHVRVFKPPAEEEKAPPSRPPVPYLVLICDPIPHPSNIEVPL
DTKTFLSRHTLDMKFTYCDERITELMGYDPEHLMNRSVYEYYHALDSDHLTKTHHNLFAK
GQVSTGQYRMLARGGGFVWVETQATVIYNNKNSQPQCVVCVNFVLSGIQEEKLIFSLEQT
EDLKPVKEEKKGPQEIEEEEEEQEEIEQEEVMETVCHADETVVQAATLQVLPSEEKPPEV
DVVQIFTQAPEGPPLVSLYDQLKEEPEALTLLAPAAGDTFISLDFSCPDSEMNLLEDAPL
YNDVMLPSTSEHLALPLTDLTPSESPRSTPSPPAEQEVPCGRAGGHTQASSPPVPDSPLN
LGFPGDMELSSDFDLVEKLFAVDTKPKTPFTTQAIEDLDLEMLAPYIPMDDDFQLRSLAP
DEHLPCEPPPVRPPATSAPLHSYLSSPSGRTGGPGPLGPVATPNAAPLLSKRNPQLEKEV
SLKMLAAVNAQRKRKLGDVPLTDVFAAGALLQGPCEQGKKLKVSEVPVMLSHRYVLLLPS
DLASLLLGPSSEGGSPAITLPQLTRYDCEVNAPVQGRQLLLQGEELLRALDQVN
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atggacactggaattgtccctgaaaagaaaagggtgagctcggaccgcaggaaggagaag
tctcgggatgcggcgcgctgccggcgggggaaggagtcggaggtgttctacgagctggcc
caggagctgcccatgccccacagcgtccgggccaacctggacaaggcctccatcatgagg
ctcaccatcagctacctgcgcatgatgaagctgctcggcaccgacgggcccgtggcggag
gcggccccggaggagagcgagctgggggcccggctgagcggctcctacctgaaggccctg
gaggggttcctcatggtgctgtcggaggacggagacatgatctacctctcagagaacgtc
cacaagtgcctgggcctggcacagtttgacctgaccgggcagagcgtgttcgactacacg
catccgtgtgaccaggaggagttgagagagatgttggtccacaaaacaggctccaagaag
accaaggaacccagcaccgagcgcaccttcttcctccgcatgaagtgcaccctcactagc
aggggccgcaccgtcaacgtcaagtcggccacctggaaggtgctccggtgctccggccac
gtgcgcgtgttcaaaccccctgcggaggaggagaaggccccaccctccaggcccccggtg
ccctacctggtgctgatctgtgaccctatcccgcacccctccaacattgaggtgcccctg
gacaccaagaccttcctgagccgacacacgctggacatgaagttcacctactgcgacgag
aggataacggagttgatgggctacgacccggaacacctgatgaaccgctctgtgtacgag
tactaccacgccctggactcggaccacctcaccaagacccaccacaacctgttcgccaag
gggcaggtcagcacggggcagtaccgcatgctggcccggggggggggctttgtgtgggtg
gagacgcaggccaccgtcatctacaacaacaagaactcccagccgcagtgtgtggtctgc
gtcaacttcgtgctcagcggtatccaggaggagaagctgatcttctctctggagcagacg
gaggacctgaagccggtgaaggaggagaagaaagggccgcaggagatagaggaggaggag
gaggagcaggaggagattgagcaggaggaggtgatggagacggtgtgccatgccgacgag
actgtggtccaggccgcgactctccaggtgctgcccagcgaggagaagcctccagaggtg
gacgttgttcagatcttcacgcaggcccctgagggcccgcccctggtcagcctgtacgac
cagctgaaggaggagcccgaggccctcaccctgctggccccggccgcgggagacaccttc
atctccctggacttcagctgccctgactccgagatgaaccttctggaggacgcgcctctc
tacaacgacgtgatgcttccctccaccagtgagcacttggccctgcctctgactgacctg
acccccagtgagtccccccgctcaacccccagcccccccgcagagcaagaggtgccctgc
ggccgagccggcggccacacgcaggccagcagccccccggtgcccgacagccccctgaac
ctaggcttccccggggacatggagctcagctcggacttcgacctggtcgagaagctgttt
gccgtcgacacgaagcccaagacccctttcacgacccaggccatcgaggacctggacctg
gagatgctggcgccgtacatccccatggacgacgacttccagctgcgctcgctggcccct
gacgagcacctgccctgcgagccgccgccggttcggccgccggccacctccgcaccgctc
cacagctacctgagctcaccctcgggccgcacggggggccccgggcccctggggccggtg
gccacgcccaacgcggcccccctgctctccaagaggaacccgcagctggagaaggaggtg
tctctgaagatgctggccgccgtgaacgcccagcgcaagaggaagctgggcgacgtcccg
ctgacggatgtctttgcagcgggggcattgcttcagggcccgtgtgagcaggggaagaag
ctgaaggtgtcggaggttcctgtgatgctctcccatcgctacgtcctgctgctgccgtca
gacctggccagcctcctcctgggcccctcctcggagggcggcagcccggccatcaccctg
ccccagctcacccgctacgactgcgaggtcaacgcgcccgtacaagggcgccagctcctg
ctgcagggggaggagcttctgcgagctctggaccaagtcaactag
DBGET
integrated database retrieval system
