Gadus morhua (Atlantic cod): 115544108
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Entry
115544108 CDS
T10832
Symbol
taf4
Name
(RefSeq) transcription initiation factor TFIID subunit 4
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115544108 (taf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmh03021
]
115544108 (taf4)
03036 Chromosome and associated proteins [BR:
gmh03036
]
115544108 (taf4)
Transcription machinery [BR:
gmh03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
115544108 (taf4)
Coactivators
SAGA/TFTC/STAGA complex
115544108 (taf4)
Chromosome and associated proteins [BR:
gmh03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
115544108 (taf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
AAA_23
Motif
Other DBs
NCBI-GeneID:
115544108
NCBI-ProteinID:
XP_030212789
Ensembl:
ENSGMOG00000002528
LinkDB
All DBs
Position
1:17481614..17490950
Genome browser
AA seq
987 aa
AA seq
DB search
MKCNHPPLLPALSLSLTNHSIWRRRVSRDSSNRRFCRTRERSCAKMAAGSDCLDDVFNTE
VDEKVVSDLVGSLESELTGAGETSATASLQSTKKQVGNSAAAANSNVQSSRIPQELAKTG
VQGGVISSGSPMDGAGGTTAAAVSGMTARPNPTKTSAVSDAATVTTDPAIGAPAAIAVKT
LNGSNLVTISHIPGGVPCVPKGNALLSTTANTNNPTYLPSAHNVVASTVIAPQSSTSSVP
TVTLVRPPMQTPSVSSQGAVISTSTVASVTSTQGPGAVINTLESPKTIIQTTAPISMVSA
VPTGATVAVKSPTVLQNVRTSVPSPINAAPGSAAVRTIAAQVLAPRIGQQQPNAPNVQNI
QLPPGMVLVRSESGQLLMIHHQTLAQMQAQSQSQSAMTPRPATPTSTPSVQLASLQAPGG
SLLARQVTQNNLIKQGLGVQTSVQATTTLQRPPVLQNTVMLGGSASTPGQPLGTATTGQP
GSAAPAVTQRIGPAGAPPVPTPISAETLENVKKCRNFLSTLIKLASSGKQTPETTANVKE
LVKNLLEGKIEPEAFTSRLYEELNSSPQPYLVPFLKRSLPALRQMTSDSTAFIHQSQLPL
PCTQPSSTSAALTAMVLRPPLSTTTTASTRTPVVTLTQSPHCKAGSIAPQQQGATVRPQV
TLAQPSLVALRGQPQPRIIMSQPQVVKQLQGSVPVVKQPLASGTRGVLSAHSALTAAQRN
KLKEGGGGTYRDDDDINDVASMAGVDLSEESARILATNSDLVGTVTRSCKDQPFLTTTLL
TRRVLEMGRKFGVCDLGQEVINYISHATKQRLQNLLEKVSEVAQQKNLTFKEDERFEQVT
DVRTQLKFFEQLDQMEKQRKEEQEREILMKAAKSRSRQEDPEQLRLKQKAKEMQQQELAQ
IRQREANLTALAAIGPRKKRKMGSPANGAVAEGSGSGAAQPGGSNGGGSRQFTRQRITRV
NLRDLLFCLENERESGHSHLLYKGLLK
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgaaatgcaaccatccgccattacttccagctttatctctcagcttaaccaatcacagc
atctggcgacggcgcgtcagcagggactcatccaatcggcgcttctgtcgaacgagagag
cgtagctgtgcaaagatggcggcgggctccgattgcctggatgatgttttcaacacagag
gtggacgaaaaagtagttagtgatctagttggttctctagagtcagaactcacaggagcg
ggtgaaacgagcgctactgccagtttacagtccacaaaaaaacaggtcggaaactctgct
gcagcagcaaactccaatgtccagtccagcagaattccacaagagctcgcaaaaacaggg
gtgcaaggaggtgtcatcagcagcggttcacccatggatggagcaggcggaaccacagcg
gccgcggtatcgggtatgacagcccgtccgaatccaaccaagaccagcgccgtcagtgat
gctgctacggtcaccaccgatccagcgatcggtgcaccagcagcgatcgctgtcaaaact
ttgaatggaagtaacttggtgacaatctcgcatattcctggaggcgtgccctgtgtgcct
aaaggaaatgcgcttctgtccactactgcgaacactaataatccgacatatttacccagt
gcgcataatgttgtcgcttcgacggtgatcgcccctcagtcctctacgagcagtgtgccc
acagtgacactggtgaggccacctatgcaaactccctcggtttcctctcagggggcagtc
atctccacttcaacagtggccagtgtcaccagcactcaaggtcctggtgctgtgatcaac
acattagagtcacccaaaaccatcatacagaccacggcgccgatatccatggtatccgct
gtgccgacgggagcaaccgtagctgtcaaaagcccgaccgttctgcagaacgtgcggacg
tcggtgccgtcccccatcaacgcagcgcccgggtcagctgcggtacggaccatcgctgct
caggtgctggccccacggattggacagcaacaacccaacgccccaaacgtccagaacatt
caactgccgccaggcatggtgctggtgcgtagtgagagcgggcagctcctgatgatccac
caccagaccctggcccagatgcaggcccagtcccagtcccagagtgccatgacgccgcgc
cccgccacccccaccagcactccatcggtccagctagcctctttacaggctcccgggggc
tccctgttggctcgccaggtgacccaaaacaatctgatcaaacagggccttggtgtccag
accagtgtccaggccaccaccacgctccagaggccgcccgtcctgcagaacaccgtcatg
ctgggagggagtgcttcgaccccggggcagccactgggcaccgccaccacggggcagccc
ggctctgctgcccccgccgtcacccagaggataggccccgctggggcccccccggtccct
actcccatctccgcggaaacactggagaacgtgaaaaagtgtcggaacttcctgtccact
ctgatcaagctggcctctagcgggaagcagacccccgagaccacggccaatgtcaaggag
ctggtgaagaacctgctggaggggaagattgagccagaggccttcaccagtaggttgtat
gaggagctcaactcttcaccacagccctaccttgtgcctttcctcaagaggagtctacca
gcgctgcgtcagatgacttcggactccaccgccttcatccaccagagccagctccccctg
ccctgcactcagccctcctccacctccgccgccctcaccgccatggtgctgcgaccccct
ctctccaccacaaccaccgcctccaccagaacccccgtcgtcacccttacccagtcgccc
cactgcaaggcaggctcgatcgcaccccagcagcagggggcgacggtgaggccccaggtg
actttggctcagccctccttggttgcgctcagaggacaaccccagcctcgcatcatcatg
agccagccacaagtagtcaaacagctgcaaggttcagtgccagtggtcaagcagcccctg
gcttcagggaccaggggcgtgctctccgcccactctgccttaacagcagctcagaggaac
aaactgaaggaaggaggtggaggaacctacagggatgacgatgacatcaacgacgtggcc
tccatggcgggagttgacttatcagaggagagcgcccgtatcctagcaaccaactcggac
cttgtcggcaccgttacccggtcgtgtaaggaccagcccttcctcaccaccaccctgctg
acccggagagtcctggagatggggaggaagtttggtgtctgtgacctgggccaagaggtc
atcaactacatctctcacgcgaccaagcagcgactgcagaatctgctggaaaaagtgtcg
gaagtggcgcagcagaaaaacctaactttcaaggaagatgaacggtttgagcaggtcacc
gatgtgcgaacgcagctcaaattctttgagcagttggaccagatggagaagcaaaggaaa
gaagagcaggagagagaaatcctgatgaaggccgctaagtctcggtcgcgacaagaagat
cccgagcagctcagactgaagcaaaaggccaaagagatgcaacagcaggagctggcgcag
atccggcagcgggaggccaacctcacggcactggcagccatcgggcccaggaagaaacgc
aaaatgggctcgccagccaacggcgccgtcgcagagggctcggggtccggtgccgctcag
ccaggtgggtcaaacggaggagggtccaggcaattcacacgccagcgcatcaccagggtc
aacctcagggacctgctcttctgcctggagaacgagagggaatccggccactcacacctg
ctctataaaggcctgctcaagtag
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