Gadus morhua (Atlantic cod): 115544353
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Entry
115544353 CDS
T10832
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03013
Nucleocytoplasmic transport
gmh03015
mRNA surveillance pathway
Brite
Messenger RNA biogenesis [BR:
gmh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115544353 (srrm1)
Spliceosome [BR:
gmh03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
115544353 (srrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
115544353
NCBI-ProteinID:
XP_030213114
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Position
5:8984183..8993271
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AA seq
878 aa
AA seq
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MDAGFFRGTSAEQDNRFSNKHKKLLKQLKFAECLDKKVDMTKVNLEVIKPWITQRVTEIL
GFEDDVVIEFIFNQLDEKHPDSKMMQINLTGFLNGKNAREFMRDLWPLLLSAQENIAGIP
SAFLEQKKEEIKQRQIEQEKLASLKKLDDDKKEKENKERERAQSKSPRRRKSRSPSPRRR
SPVKRDRKPSPPRSPRHKPGPVTGGTPPPALMPLLPKPEELQPEPEVPASAVPEPVVPQL
ASISEEVVEVEVAKVDPVPELKQPSPEKVAKKEERPKSRERDKDGRRDRPRHRSRSRSRR
RRSFSRSYSPRRRPSPRRRMSPRRRSPPRRGPQSSRHRHRRSPVRRRRSRSASTSGSSSS
KSHSPKKAVKRTSATPPRKQPRLLDPAGSPPGKDRRSASPRARKGRGSPSPSRAAGVKRK
PVVGRAESPADNPKPRRSEDSESDEDKNEKDATADSVQQRRQYRRQNRESSSGSGSSSSS
EEEAAKKPPAPGPAPRNGDVRRRRSHSASPRRRHRDASPRRRRSPSPRGRGRRSPSPRRR
RSPSPPRRRSPSPPPRRRSPSPPPRRRSPSPRRYSPPIQRRYSPSPVPVQKRRMSGSPTK
GSPPASKRRVSRSPKRRSPPPGQKRRTPPSSTSPMQRHRRSPMLPSMRPGRDARSPAAAA
KRLSPSPAQRGRGGARGSASPPRRFDATSTSPSNQRRQPSPSHGNRAIRRVSRTPEPRKN
QRSSASPQPIKRMSSRSRSVSPAPPAALKRPAPGSASPSPSRSASGSPPPAKKASSGSAS
PSPSKNSDAEGGKKKKKKKEKKHKKEKKHKKRKKHRKEKSGGPATGNGQESLGANEDQDS
KKESDSEVEDSLDDLEKHLREKALRSMRKAQISPSQMS
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggattcttccgcggcacgagtgcggaacaagacaaccgattcagcaacaag
cataagaaactactaaagcaactcaaatttgcagaatgtctggacaagaaggtggacatg
accaaagtaaacctggaggtcatcaaaccctggattactcagcgagtcaccgagatcctg
ggattcgaagatgatgttgtcatagaattcatatttaaccagctggatgagaagcaccct
gatagcaagatgatgcagatcaacctgaccggcttcctgaatggaaagaacgccagggag
ttcatgcgagacctatggcccttgttgctcagtgcccaggagaacatcgctggaatcccc
tctgccttcctggagcagaagaaggaggagatcaagcagagacagattgagcaggagaag
cttgcgtctctcaagaaactggatgacgacaagaaggaaaaagaaaacaaggagcgagaa
cgagctcagtccaagagccccaggaggaggaagtcacggtcaccttcaccacgacgaagg
tcccccgtgaagcgggacaggaagcccagccccccgcgctctccacgtcacaagcccggc
ccagtgaccgggggtacacccccacctgctttgatgccgctgctcccaaagccagaggag
ctccaacccgaacccgaggtgccagcaagcgccgttccagaacctgtcgtcccccagctt
gcctctatcagtgaggaggtggtggaagtggaggtggcgaaagtggatcctgtccctgag
ctgaagcagccttctccagagaaggttgccaagaaggaggagcggccaaagtcccgggag
agggacaaggacggccggagggaccggccccgccaccgatcccgctcccgctcccgtcgc
cgccgctccttctccagatcctactcgccccgcagaaggcccagtcccaggaggagaatg
tccccgcgccgtaggagccctccccgacgtggcccacaaagctcccgacacagacacagg
cgctcacctgtccgacggaggcgctctcgctccgcctcgacctcgggaagcagttcttcc
aagtcccactcgcccaagaaggctgtgaagagaacgtctgccacgccgccccgtaaacag
ccacgcctcctggaccccgccggtagccccccaggaaaggaccgccgctccgcgtccccg
cgggccaggaagggccgcggctccccctctccttccagagctgccggggtaaaacgaaaa
ccagtagtaggcagagccgagtcaccagcagacaatcccaaaccaagacgatctgaagac
tcggagtccgacgaagataaaaatgaaaaagacgcaaccgcagattcagtgcaacaaagg
cgtcaataccgcaggcagaatcgtgagtcttcctcaggttccggttcttcttcctcatca
gaggaagaggccgccaagaaacccccggcgcccggcccagcgccccgcaacggcgatgtc
cgcaggaggcgcagccactcggcctccccgcggagacgccaccgggacgcgtcaccaagg
agaagacggtctccttctccacgaggacgcgggcggcgctccccatccccacgccggcgc
agatccccctctccccccagacggaggtccccgtccccgccgccccggaggcgctcccct
tcccccccccctcgcaggcgctccccctccccgcgccgctactccccgcccatccagcgc
cggtacagcccttcgccggtgccagtgcagaagaggaggatgtccggctcccccaccaaa
ggctccccgcccgcctccaagcgccgcgtctccaggtctcccaagcgcaggagccctccg
cccggccagaagaggcgcacgcccccgtcttccacgtctcccatgcaaaggcaccggcgg
agccccatgttgccttccatgcggcccggcagggacgcgcggtccccggccgccgcggcc
aagcgcctctccccgtccccggcgcagcgaggccgcggcggggccaggggctccgcaagc
ccccccaggcgcttcgatgccaccagcacctctccatccaatcagaggaggcagccgtcc
ccctcccatggcaacagagccatccgcagggtgtccaggaccccggagccacgcaagaac
cagaggtcctctgcgagcccccaaccgataaagagaatgtcctccaggtcgaggtccgtc
tccccggctccgccggcggccctgaagcgtccggcgccgggctctgcctctccttctccc
tctcgctctgccagcggctctcctcctccagccaagaaggccagcagcggttctgccagc
ccatcccccagcaagaattcggacgcagagggcggaaagaagaagaagaagaagaaggag
aagaaacacaagaaagagaagaagcataagaaacgcaagaagcacaggaaggagaagagc
ggcggcccggcgacgggaaacggccaggagagccttggggcgaacgaggaccaagattca
aaaaaggaatcagacagcgaagtagaggacagcctggatgatctagagaagcacctgcgt
gagaaggcactgcgctccatgaggaaagcacagatttccccatcgcagatgtcctga
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