KEGG   Gadus morhua (Atlantic cod): 115544555
Entry
115544555         CDS       T10832                                 
Name
(RefSeq) histone-binding protein RBBP4
  KO
K10752  histone-binding protein RBBP4
Organism
gmh  Gadus morhua (Atlantic cod)
Pathway
gmh03082  ATP-dependent chromatin remodeling
gmh03083  Polycomb repressive complex
gmh04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:gmh00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    115544555
   03083 Polycomb repressive complex
    115544555
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    115544555
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:gmh03036]
    115544555
Chromosome and associated proteins [BR:gmh03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     115544555
  Histone modification proteins
   HAT complexes
    HATB complex
     115544555
   HDAC complexes
    Sin3A-HDAC complex
     115544555
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     115544555
    PRC2.2
     115544555
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     115544555
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    115544555
  Chromatin remodeling factors
   NuRD complex
    115544555
   NuRF complex
    115544555
   NuRF complex (fruit fly)
    115544555
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR75_1st Beta-prop_EML EIF3I WD40_MABP1-WDR62_2nd WD_LRWD1 Beta-prop_WDR90_POC16_2nd Beta-prop_DCAF12 Beta-prop_WDR19_1st WD40_RFWD3 ANAPC4_WD40 Beta-prop_RIG_1st WD40_MABP1-WDR62_1st eIF2A Beta-prop_IFT140_1st MIOS_WD40 Beta-prop_SPT8 NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 115544555
NCBI-ProteinID: XP_030213417
Ensembl: ENSGMOG00000011707
UniProt: A0A8C4ZX35
LinkDB
Position
5:complement(9624615..9628080)
AA seq 424 aa
MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD
YSVHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK
INHEGEVNRARYMPQNPCIIATKTPTSDVLVFDYTKHPSKPDPSGECTPDLRLRGHQKEG
YGLSWNPNLSGCLLSASDDHTICLWDISTVPKEGKIVDAKTIFTGHTAVVEDVSWHLLHE
SLFGSVADDQRLMIWDTRSNNTSKPSHAVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE
DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGAADV
DPQP
NT seq 1275 nt   +upstreamnt  +downstreamnt
atggctgataaagaagccgcgttcgacgatgccgtggaggaaagggtgatcaatgaggag
tacaagatctggaaaaagaacaccccctttctctatgacctggttatgacccatgcgctg
gagtggccaagtctcaccgcccagtggttacctgatgtcaccagacccgaggggaaggac
tacagtgtgcaccggctggtccttgggacacacacttcggacgagcagaatcaccttgtc
atagcaagtgtccaacttccaaatgacgatgcccagtttgatgcttcacattatgacagt
gaaaaaggagagtttggaggattcggctcagtcagtggtaaaatcgagattgaaatcaag
atcaaccacgagggagaagtgaaccgagcccgctatatgccccagaatccctgcatcatc
gccaccaagacccccaccagtgacgtgctggtgttcgattacacgaaacacccctctaaa
ccagacccctctggagagtgcactcctgacctgcgtttgaggggccaccagaaggagggc
tacggcctctcgtggaaccccaacctgagtggttgtctgctcagcgcgtcagacgaccat
acaatctgcctatgggacatcagcacagtgcccaaggagggcaagatcgtggacgccaag
accatcttcacgggccacacggcggtggtggaggacgtgtcctggcacctcctgcacgag
tccctcttcggctccgtggctgacgaccagagactcatgatctgggacacgcggtccaac
aacacgtccaagcccagccacgctgtggacgcccacaccgccgaggtgaactgcctgtcc
ttcaacccctacagcgagttcatcctggccacgggctcggcagacaagaccgttgccctc
tgggaccttcggaatctcaagctgaagctgcactcgtttgagtcgcacaaggacgagatc
ttccaggtccagtggtctccccacaacgagaccatcctggcctccagtggcacagaccgc
cgcctcaacgtctgggacctgagtaagatcggagaagagcagtcgccagaagatgccgag
gacggtcctccagagcttctgttcatccacggaggacacacggcgaagatctccgacttc
tcctggaaccccaacgagccctgggtcatatgctcggtctcagaagacaacatcatgcaa
gtctggcagatggctgagaacatctacaacgatgaggaccccgaaggagcggcagacgtg
gacccccagccttga

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