Gadus morhua (Atlantic cod): 115544970
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Entry
115544970 CDS
T10832
Name
(RefSeq) AT-rich interactive domain-containing protein 1A-like isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115544970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gmh03000
]
115544970
03021 Transcription machinery [BR:
gmh03021
]
115544970
03036 Chromosome and associated proteins [BR:
gmh03036
]
115544970
Transcription factors [BR:
gmh03000
]
Eukaryotic type
Helix-turn-helix
ARID
115544970
Transcription machinery [BR:
gmh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
115544970
Chromosome and associated proteins [BR:
gmh03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
115544970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
GLTT
Motif
Other DBs
NCBI-GeneID:
115544970
NCBI-ProteinID:
XP_030213511
Ensembl:
ENSGMOG00000001024
LinkDB
All DBs
Position
6:4875346..4897189
Genome browser
AA seq
2396 aa
AA seq
DB search
MAAQVATLNTSPPSELKKPDREPKEESVPGEKQTDKKPSGLDSGSPGRGDLQDGADGGNA
GGGGEPEMKNGNGNPPRPNNNQNDSIGPDGNNHPGMVNHHGSAFPPPSYGYSQHYGRAPF
HQHGGQQSPGMAAAAGPVVQSSNMIDPYQPNSHDHGFSSHPFNNYSPFPNRTPYPGQGYG
MNSPRNTQAPTAGGQPAKQQPAGGPTAMAGSYNNQRYTMGNPQPTSTPTLNKLLTSPSST
RGYPNYPPGDYSGPEGATKGPADMGSSGPYGGSNPAWQQRPHHPSPMSPGSAGPPLGRNQ
PPGPMDPMGKMRGQPYGAGSPYSQQPGQGPPTGPQQGPGYPGQAYGPPGPQRYPVGMQGR
APAGMGAMPYGPQMGSYGQQGPGGYGPQSQAQYYGQPGQAPHPGQQQPAYPQPPSGQQGG
QTPYPGQPHPAPSSSAAAHSQGAPAYQQPHMPPQGQGPPPGASQGPPQQTPYSQASAPQS
GQSPYPQQQGPPSQAPSGLPPSQAGPQAPAGPQSQSNYPGATQGPQQQQPSQQQQQQQQQ
QSSSQQQAASQPSQQTPGHGPQHPPQGPSGAYPQNPAAAPPTTQQQQQQQQQQQQQQQQQ
QQQQQAQQSPYQRFPPQQQPQQDLSGSLDDLPVGTEAAMSPGVSTPGVSTPGVSTPGVSS
SQGDQSNPPFSPHTSPHLPGIRGPSPSPAGSPASAGAGRSGPLSPANMPGTQMPPRPSSV
QSDGSLHPSMSQSPMAQERGFMQRNPQMPPYGSPQSASSLSPRQPSGGQMHAGMGPYQQN
NTMGGYGPQGGQYGPQGYPRQPGYSNMPNANYQGPGVGPMNPMAAQAGGPPYTGMPPGRM
PPGQMGVRPYGPNMGPNMGPNMGPNMGPNMGPNMGPNMGPNMGPNMGPNMGPNMGPNMGN
MPPQVASGMCPPPGLNRKPPDGVAMQHAASNSMHNRMPGYPNMPPGMMGSGPPYGPPMNN
MSGMMNPQGGSPYPMGPNIANNSTGMAPSPEINNKMNNKVDGSVTPKPEPKSKKSNSSTT
TNEKITRLYELGPEPERKMWVDHYLAYIDDKAMGMTNLPAVGRKPLDLFRLYMSVKEIGG
MAQVNKSKKWRELATTLNVGTSSSAASSLKKQYMQCLFAFECKVERGEEPPPEIFTDNKK
NQAPKIQPPSPASLCSTAGSGSLQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQMPPLPP
GASVSLQDPFAEGSDPAFPRRNLTPNSGYQSGMSTPEIQGRMGPYEASKDPFGAMRKVSE
QFLPASQPPSGGAGEPPPQPPPQQQQQQQQQQPPFNRGPPGAMGNMPMGPRQQYPYGPGY
DRRPEQGIGPEGSMGPSGPQPNPMMPANTEAGMYSPNRFPQQQQQQPRHDSYGNQYPGQA
TPPSGTYSNPQPGMYPQQQQSYKRPVEGGYPPAKRHEGEYSGPFPGGQTPAQQQQQQQQP
GGPSAAPAGQPDSYSQYGGSGPPGPYSGPDRRPPGPPAAQFPFGFGRERMQAAAAAAAAA
GAGGGPAAQPNMPPQMMQPGGPEGPPGGMWQGGRGDMNYQNFPNRQGGPGASGPGYQAMT
RSEEMMTPEQRMAHEGQWGGQMGPVRQPPYGPGGGGGAGPPMSRSLQPNYQSPQGVQNHI
PHIPAAPSPASVPRPLESRTSPGKSPYAHGGGIKMQKAGPPVPASHIAPPSVQSPLIRRD
MPFPPGSVEATHPILKPRRRLTMKDIGSPEAWRVMMSLKSGLLAESTWALDTINILLYDD
NSIATFNLATLPGMLELVVEYFRRCLIEIFGILREYEVGDPGQRTLIDPDALTRDWAGAE
EEDEDPRGAEDMEQDDEDDEDEDDEEDEDEAEVVGVAAAAGERKEGVQVRIKEEPGEQEP
DAAAQNGEKAENGEDVAAAAMEEEKKEPAPLAPGQARPKQASKFDKLPVKVVRKRDPFAA
ARTGRRATVQEFDSGLLHWSAGGGDSTEHIQTHLEPRRGFMDPRRRVPDDAAPRRGKLPA
AAGVVAETAASPSAAEKEKAKEQDEEAPRDGEEPAAADKKSDGEEQQRRRRRRRQEEEEE
EEDAQEEEIRSLGVGLIRKSAGGVAVLEDEPHSKDEGPLVTLANWQDSLARRCVCVSNIV
RSLSFVPGNDHEMSRHPGLLLLLGRLVLLHHRHPERKQAPLTYEKDEESDEGVGQRDEWW
WDCLELLRENTLVTLANVSGQLDLSLYPESICLPLLDGLLHWAVCPSAEAQDPFPTLGPH
SALSPQRLVLETLSKLSIQDNNVDLVLATPPFGRLEKLYAILVRLIGDRKVAVCREMAVV
LLANLAQGDGTAARAIAVQKGSVGNLLGFLEDSLAATQLQQSQSSLLHLQGMHFEPTSPD
MMRRAARALHALARVEENHSEFTLYESRLLDLSVSPLMNSLVSHVICDVLFLIGQS
NT seq
7191 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgccactctcaacactagcccgccttcagaactaaaaaagccggat
cgagaaccaaaagaggagtcggtaccgggggaaaaacagacggacaagaaaccctcggga
ttagacagcggatcaccgggacggggagacctgcaggacggggccgacggaggaaatgca
gggggaggaggggaacctgagatgaagaacgggaatgggaacccgcccaggcctaataat
aatcagaatgattctatcggaccggatgggaataaccaccctggtatggttaatcaccac
gggtccgcttttcctccaccctcgtacggatacagtcagcactacggtcgggcccctttt
catcaacatggcggacaacaaagccctggcatggcagctgctgcaggtccggtcgtgcag
tcgagcaacatgatcgacccatatcaacccaactcgcacgaccatggattttctagccat
ccgttcaacaattacagccccttcccaaacagaactccctatcccggccaaggatacggc
atgaactccccacgcaatacccaggcaccgacagctgggggacagccagctaagcaacaa
ccagcgggaggacccacagcaatggctggatcttacaataatcagagatatactatggga
aaccctcagcccacatccaccccgacacttaacaaactcctaacatcccccagttctacc
cgggggtaccccaactacccgcccggtgactacagcggtccagaaggcgctactaaggga
ccagcagacatgggcagcagcggtccgtatggaggcagcaacccggcctggcaacaaaga
ccccatcacccgtcgcctatgagtccgggaagtgccgggccaccgcttggcagaaaccag
cctcctggacccatggacccgatggggaagatgcgaggccaaccgtacggagcagggagt
ccgtactcccagcagcccgggcaggggcccccgaccgggccccaacagggaccaggctac
ccaggccaggcgtacggccccccgggtccacaacgatacccggtggggatgcagggacgc
gctcccgcgggcatgggggcgatgccgtacggcccacagatggggtcctacggccaacag
gggccgggagggtacgggcctcagtcccaggcccagtactacggccagcccggccaggcc
ccccaccccggccagcagcagccggcctacccccagcccccctccggacagcagggcggg
cagacgccttacccgggccagccccacccggcgccctcctcctccgccgctgcccacagc
cagggagcgccggcctatcagcagccccacatgcccccccagggccagggcccgccgccg
ggcgcgtcccagggcccgccgcagcagacgccgtattcccaagcgtcggcgcctcagtcc
ggccagtcgccgtatccccagcagcaagggccccccagccaggcgccctctggcctgccc
ccctcgcaggccggcccgcaggctcccgcagggccccagagccagtccaactacccgggg
gcaacgcaggggccgcaacaacagcagccgtcccagcagcagcagcagcagcagcagcag
cagtcctcctcccagcagcaggcagccagccagccctcacagcagacccccggacacggg
ccccaacacccaccccagggcccgtcgggagcgtacccccaaaaccctgccgctgcacct
cctaccacacagcagcagcagcagcagcagcagcagcagcagcagcagcaacaacagcaa
cagcagcagcagcaagcacaacagtctccttaccaacggtttccccctcaacaacagccc
caacaggatctgtcgggctccctcgacgacctgcccgtgggcaccgaggcggccatgagc
cccggcgtgagcacgcccggggtcagcacgcccggggtgagcaccccgggggtctccagc
agccagggggaccagagcaacccgcccttctcgccccacacctccccccacctgccgggc
atccgcgggccttcgccgtcgccggccggctcgccagccagcgccggcgccggccgcagc
ggcccgctgtctcccgccaacatgccagggacccagatgcccccgaggccgtcgagtgtg
cagtccgacggcagcctgcacccctccatgagccagtcccccatggcccaggaacgaggg
ttcatgcagcggaacccccagatgcccccgtacggatccccccagtccgcctcctctctg
tcgccacgccaaccctccggaggacagatgcacgctgggatgggaccctaccagcagaac
aacaccatgggcggctacgggcctcagggggggcaatacggaccccaaggttacccccgg
caacccggctacagcaacatgcccaacgccaactaccagggtccgggcgtggggcccatg
aaccccatggcggcccaggccggagggcccccctacacggggatgcctcccggtcgcatg
ccccccgggcagatgggagtgcgcccctacgggcccaacatggggcccaacatgggaccc
aacatgggaccgaacatgggacccaacatgggccccaacatggggccgaacatgggaccc
aacatgggccccaacatgggccccaacatgggccccaacatgggccccaacatgggcaac
atgccgccccaggtggcctcggggatgtgtcccccgccgggcctgaaccggaagcccccg
gacggtgtggccatgcagcacgccgcctccaactccatgcacaacaggatgcctggctac
ccaaacatgcccccgggtatgatgggctccggccctccatacggaccccccatgaacaac
atgtccggcatgatgaacccccaggggggctccccttacccaatgggccccaacatagcc
aacaactccactggtatggctcctagtcccgagattaacaataagatgaacaacaaagtg
gatggaagcgtgacccctaaaccggagcccaaatccaagaagtccaactcgtcaacgacc
accaacgagaagatcacgcgtctgtacgagctgggcccggagcccgagaggaaaatgtgg
gtggaccactacctggcctacatcgacgacaaggccatggggatgaccaacctgcccgcc
gtcggccgcaagccgctggacctcttccgcctctacatgtcggtcaaggagatcggcggc
atggcgcaggtcaacaagagcaagaagtggcgcgagctggccaccacgctcaacgtgggc
acgtcgagcagcgccgccagctccctgaagaagcagtacatgcagtgtctgttcgccttc
gagtgcaaggtggagcgcggagaggagcccccgcccgagatcttcaccgacaacaagaag
aaccaggcccccaagatccagcccccgtcccccgcgtccctgtgttccacagccggctcg
gggtccctccagggcccccagacgccccagtccaccagcagctccatggccgagggggga
gacctgaagccccccaccccggcctccaccccccacagtcagatgcccccgctgcccccc
ggggcgagtgtcagcctgcaggaccccttcgccgaagggagcgacccggccttcccccgg
aggaacctgacccccaactcgggctaccagtccggcatgagcacgccggagatccagggc
cgcatgggcccctacgaggccagcaaggaccccttcggggccatgcgcaaggtgagcgaa
cagttcctgcccgcgagccagcccccgagtggtggagccggggagccaccgccacagccc
ccgccccagcagcagcagcagcagcagcagcagcagcctccgttcaaccgggggcctcct
ggagccatggggaacatgccaatggggcccaggcagcagtacccgtacggccccggatat
gacaggagaccagagcaagggatcggccccgagggaagcatgggccccagcggccctcag
ccaaaccccatgatgcccgccaacaccgaggctgggatgtactcgccaaaccgcttcccc
cagcagcagcagcagcagccacggcatgattcctatggtaatcagtatcctggccaggca
acgccccctagtggcacctactccaacccgcagcccggaatgtacccacagcaacaacag
agctacaagcgtcccgtggagggggggtacccgcccgccaagcggcacgagggggagtac
agcgggcccttcccgggggggcagacgcccgcccagcagcagcagcagcagcagcagccg
gggggcccctccgcggccccggccggccagcccgactcctacagccagtacggcggcagc
gggcccccggggccctactccggccccgaccgccggccgcccggcccccccgccgcccag
ttccccttcggcttcggccgggagcgcatgcaggcggcggcggcggcggcggcggcggca
ggggcggggggcggacccgccgcccagcccaacatgcccccgcagatgatgcagccgggc
ggccccgaggggcccccgggcggtatgtggcaggggggccggggggacatgaactaccag
aacttccccaaccggcaggggggtcccggcgcctcgggcccgggctaccaggccatgacc
cgctcggaggagatgatgacgcccgagcagcgcatggcccacgagggccagtggggcggc
cagatggggcccgtacggcagccgccgtacggccccggggggggcggcggggcggggccc
cccatgtcccgctcgctgcagcccaactaccagagcccgcagggcgtccagaaccacatt
ccacacattcccgcggcgcccagcccggcctcggtgccgcggcccctggagagccgcacc
tcgcccggcaagtcgccctacgcgcacggcggcgggatcaagatgcagaaggcgggcccg
cccgtgcccgcgtcccacatcgcgcccccctcggtgcagtcgcccctcatccggcgagac
atgcctttccctccgggctccgtggaggccacccaccccatcctgaagccccggcggagg
ctgaccatgaaggacatcgggagccccgaggcgtggcgcgtcatgatgtccctgaagtcg
ggcctgctggcggagagcacctgggcactggacaccatcaacatcctgttgtacgacgac
aacagcatcgccacctttaacctcgccacgcttcccgggatgctggagctggtggtggag
tacttccgacgctgtctcatcgagatcttcggcatcctgcgcgagtacgaggtgggcgac
ccgggccagcggaccctgatcgaccccgacgcgctgacccgggactgggccggggcggag
gaggaggacgaggacccccggggggccgaagacatggagcaggacgacgaggacgacgaa
gacgaggacgacgaggaggacgaggacgaggcggaggtggtgggggtggcggcggcggcg
ggggaaaggaaagagggtgtgcaggtccgcatcaaggaggagcccggggagcaggagccg
gacgccgcggcacagaacggcgagaaggccgagaacggggaggacgtcgcggcggcggcg
atggaggaggagaagaaggagccagcgcccctcgcccccggccaggccaggcccaagcag
gccagcaagttcgacaagctccccgtcaaggtggtgcggaagagggacccgttcgcggcg
gcgcgcaccggccggcgcgccacggtgcaggagttcgacagcggcctcctccactggagc
gccggcggcggcgactccacggagcacatccagacccacctggagccgcgccgcggcttc
atggacccgcgccggcgcgtccccgacgacgcggccccccgccggggcaagctcccggct
gccgccggcgtcgtcgcggagaccgccgcctccccgtccgcggcggagaaggagaaggcg
aaggagcaggacgaagaggcgccgcgggacggggaggagcccgccgccgccgacaagaag
agcgacggtgaggagcagcagcggcggcggcggcggcggcggcaggaggaggaggaggag
gaggaggacgcgcaggaggaggagatccgctcgctgggcgtggggctgatccggaagagc
gccggcggcgtggcggtcctggaggacgagccccacagcaaggacgagggccccctggtg
acgctggccaactggcaggactcgctggcgcgccgctgcgtctgcgtctccaacatcgtg
cgcagcctctccttcgtgccgggcaacgaccacgagatgtcccggcacccgggcctgctg
ctgctgctgggccggctggtgctgctgcaccaccgacaccccgagcgcaagcaggcgccg
ttgacctacgagaaggacgaggagtcggacgagggcgtgggccagcgcgacgagtggtgg
tgggactgcctggagctgctgcgggagaacacgctggtgacgctggccaacgtgtcgggc
cagctggacctctcgctctaccccgagagcatctgcctgcccctgctggacggcctgctc
cactgggccgtgtgcccctcggccgaggcccaggaccccttccccacgctggggccgcac
agcgccctgtcgccccagagactggtcctggagacgctcagcaagctgagcatccaggac
aacaacgtggacctcgtcctcgccacgccgcccttcggccggctggagaagctctacgcc
atcctggtgcggctgatcggcgaccgcaaggtggcggtgtgccgcgagatggcggtggtg
ctgctggccaacctggcgcagggcgacggcacggcggcgcgcgccatcgccgtgcagaag
ggcagcgtgggcaacctgctgggcttcctggaggacagcctggcggccacgcagctgcag
cagagccagagctccctgctgcacctgcaggggatgcacttcgagcccaccagcccggac
atgatgcggcgggcggcccgagccctgcacgccttggcccgggtggaggagaaccactcg
gagttcacgctgtacgagtcgcgcctgctcgacctctccgtctcgccgctcatgaactcg
ctggtgtcccacgtcatctgtgatgtactctttctgattggccagtcatga
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integrated database retrieval system
