Gadus morhua (Atlantic cod): 115545209
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Entry
115545209 CDS
T10832
Symbol
gapvd1
Name
(RefSeq) LOW QUALITY PROTEIN: GTPase-activating protein and VPS9 domain-containing protein 1
KO
K27566
GTPase-activating protein and VPS9 domain-containing protein 1
Organism
gmh Gadus morhua (Atlantic cod)
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gmh04131
]
115545209 (gapvd1)
Membrane trafficking [BR:
gmh04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
115545209 (gapvd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGAP
VPS9
DUF5601
DUF5740
Motif
Other DBs
NCBI-GeneID:
115545209
NCBI-ProteinID:
XP_030214003
Ensembl:
ENSGMOG00000006411
LinkDB
All DBs
Position
6:20192482..20224027
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AA seq
1454 aa
AA seq
DB search
MVKPDIHTLAHHLKQERLYVASEKQLIQRLNGDVLKTAERLYRAAWIAKQQRINLDRLIL
TSAEASPSECCQHAKVLEDTQFVDGYKTLGFQESIYGEFLARLRENPRLVASCLVAGLGE
RQNQDHSQGVVHTVFTSLYGNCIMQEDESYLLQVLRYLVEFELKESDNPRRLLRRGNCAF
SVLFKLFSEGLFSAKLFLTATLHEPIMQLLVEDEDHLETDPAKVTERLTPAQQERFGEKG
SEGYRQRVQAAVDANEAKLVALVNKFIGYLKQNTYCFPHSLRWIVSQMYKTLSCVERLEV
GEVRTMCTDLLLTCFICPAIVNPEQYGIISDAPINEVARFNLMQVGQLLQQLAMADDDGD
PRRKSSLSKFDKSCVAAFLDVVIGGRAAETPPMSSMNLLEGLSRTVFYMTHGQLLTMVDF
VRSVTAGDQLREEDHALLETLVATVPLSRTVKSNSLEITPSNTPQLSPATTPANKKNRLP
IAGCGYSFPATARSRSRTNIAQEGETEASSQESVQEVMPEEVLVISLSTGPQTVPGMMSE
NEVLNLQMTDGPQGDAQADDTKQHGKPDKTLRFSLCSDNLEGTSEGPSNRSNSVSSLDLE
GESVSELGAGPSGSNGVEALQLLEHEQATTQDNLDDKLRKFEIRDMMGLTDDRDISETVS
ETWSTDVLGSDFDPNMDEDRLQEIAGAAVENMLGSLLCLPGSGSVLLDPYGSTISETTSE
PWSVEVLPSDSEAADLKQEERLQELESCSGVGSTSDDTEVREVSSRPSTPGLSVVSGISA
TSEDIPNKIEDLRSECSSDFGGKDSVTSPDGEEAGHGAHQLTSPPSQTDSLLAMFDPLSC
DGSSTGTIVRPKVHYARPAHPPPDPPIPEAYALGQEPRHSMFTPHGLVQAELEHCKQRHS
CPDRLVRSRSSDIMCPGRRPTSDPGLNRRTMVEERDQGYSLGPTSSPSKDSLKGEVEDRK
DSDDEKSDRNRPWWKKRFVSAIPKVLYWTAESESPAPIAAFRKKEKHEKDDLAHERSQQD
EPLQRPSTQAQAAEDILDKYRNIKRTSPSEDLCVEESVHGSPRDDGLQNMASDDLLDSAS
QTAHQQDAKFSFSDAKKKLRMVLCSADSVALPIMAPTTTRNGLPDHNDPEDNEIVCFLKV
QLAEAINLQDKNQMAQIQETTRCVSRFDARSCRKLLAAIAEDYRKRTPYIAYLTRCRQGL
QTSQAHLERLLQRVLRDKEVANRYFTTVCVRLLLEHMESRMLDFIKAFQGCTASDDKTAA
VEDFLRYLYGAMARDTIWQYASEDQLQDAQMAIERSVMNRIFKLAFYPNQDGDILRDQLF
YEHIQRLTRVVTANHKALQIPEVYLREAPWPSAQAEIRTINAYKTPRDKVQSILRMCSTI
MNLLSLANEDSVPGADDFVPVLVFVLIRANPPCLLSTIQYINNFYASRLSGEECYWWMQF
TAAVEFIKTIDDRK
NT seq
4365 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagccagacatccacacgctggcccaccaccttaagcaggagcggctgtacgtg
gcctctgagaagcagctgatccagcggctgaatggggacgtgctgaaaacggcagagcgg
ctgtaccgcgctgcatggatcgccaagcagcagaggatcaacctggaccgcctcatcctc
accagcgccgaggcctcaccctccgaatgctgtcagcacgccaaggtgctggaggacacg
cagtttgtggacggctacaagacgctgggcttccaggagagcatctacggagagttcctg
gccaggctgagggagaacccccggctggtggcgtcctgcctggtggccggactcggagag
aggcagaaccaggatcacagccagggggtcgtccacaccgtcttcacctccctctatggc
aactgcatcatgcaggaggacgagagctacctgctgcaggtgctgcgctacctggtggag
ttcgagctgaaggagagcgacaacccgcggcggctgctgcggcgcggcaactgtgccttc
agcgtgctctttaagctcttctccgagggcctgttctccgccaagctcttcctcaccgcc
acgctccacgagcccatcatgcagctgctggtggaggacgaggaccacctggagacggac
ccggccaaggtgacggagcgcctcacgcccgcccagcaggagcgcttcggggagaagggc
tcggagggctaccggcagcgggtgcaggcggcggtggacgccaacgaggccaagctggtg
gcgctggtcaacaagttcatcggctatctgaagcagaacacctactgcttcccgcacagc
ctgcgctggatcgtgtcacagatgtacaagacgctgtcgtgcgtggagcggctggaggtg
ggcgaggtgcgcaccatgtgcacggacctgctgctcacctgcttcatctgcccggccatt
gtcaaccccgagcagtacggcatcatctcggacgcgcccatcaacgaagtggcccgcttc
aacctcatgcaggtaggacaacttttgcaacaactggcgatggccgacgatgatggagac
cccaggagaaagagcagcttgtccaaatttgacaagagttgcgtagctgccttcctggat
gtggtgattggtgggagagcagcggagaccccgcccatgtcctcgatgaacctattagag
ggcctgagcaggacggtgttctacatgactcacggtcagctgctgaccatggtggacttt
gtgcgcagcgtgaccgcgggcgaccagctgagggaggaggatcacgccctcctggagacg
ctggtggccaccgtgcccctgtcccgcaccgtgaagagcaacagcctggagatcacaccc
tccaacacgccccagctgtccccggccaccacccccgccaacaagaagaaccgcctcccc
atagcgggctgtggctattcattcccagccacggcccggagccgcagtcgtaccaacatc
gcccaggagggggagacagaggccagctcccaggagtcggtacaggaagtgatgccagag
gaggtgttggtgatctcactgagcacggggccccagacggtccccgggatgatgtcagag
aatgaggtgctgaacctgcagatgacagacgggccccagggcgacgcccaggccgacgac
accaagcagcacggcaagccggataagacgctgcgcttctccctctgcagcgacaacctg
gagggcacctccgaaggtccgtccaaccgctccaactcagtgtcgtccctggacctggag
ggggagtcggtgtcagagctgggcgccgggccgtcgggcagcaacggggtggaggccctg
cagctgctggagcatgaacaggcaacgactcaggacaacctggacgataagctgcgcaag
tttgagatccgagacatgatgggtctgacagacgaccgagacatctcagagacagtcagc
gagacctggagcacggacgtgctgggcagcgacttcgaccccaacatggatgaggaccgc
ctgcaggagatcgcaggggcggctgtggagaacatgctgggcagcctgctgtgcctgcca
gggtccggttcggtgctgctggacccctacggctccaccatctctgagaccaccagcgag
ccctggagcgtggaggtcctacccagcgactcagaagcagctgacctgaagcaggaggag
cggctgcaggagctggagagctgctcgggggtgggcagcacgtccgatgacacggaggtc
agagaggtcagctccaggcccagcaccccaggcctcagcgtggtctcaggcatcagcgcc
acctcagaagacattcccaacaagatcgaggacctgcggtccgagtgcagttcggacttc
ggggggaaggactctgtgaccagtccggatggggaggaggcgggccatggggcacaccaa
ctgacctctccaccctcgcagacggactctctgctggccatgttcgaccctctgtcctgt
gacggctcctccactggcaccatcgtgaggcccaaggtgcactacgcccggcccgcccac
cctcccccggacccccccatccccgaggcctacgcactgggccaggagccccgccacagc
atgttcacgccccacggcctggtccaggcggagctggagcactgcaagcagcgccactca
tgccccgaccggctggtgcgcagccgcagctccgacattatgtgtcccggccgccggccc
accagcgacccggggctgaaccgacggaccatggtggaggagagggaccagggctactcc
ctggggcccacctcctcgcccagcaaggactccctgaaaggagaggttgaggacaggaaa
gacagcgacgatgagaaatcggaccgcaaccggccgtggtggaagaagcgctttgtctca
gccattccaaaagtgctgtattggacggccgagagtgaatcaccagctcccatcgccgcc
ttccggaaaaaggaaaagcatgagaaagacgacctggctcatgagcgctcacaacaagac
gagccccttcagaggccgagcacccaggcccaggcagcggaggacatcctggacaagtac
cgcaacatcaagaggaccagccccagcgaagacctgtgtgtggaggagagcgtgcacggc
tcccccagggatgacgggctgcagaacatggcttcagacgacctgctggactctgccagc
cagacggcgcatcagcaggatgccaagttctccttcagtgacgccaagaagaagctccgg
atggtcctgtgttctgcggactctgtggccctgcccatcatggctcccaccaccaccagg
aacggactcccggaccacaatgaccctgaagacaatgagatcgtctgcttcctgaaggtc
caactggcagaggccatcaacctgcaggataagaaccagatggcccagatccaggagacg
acgcgctgcgtcagccgcttcgacgctcgctcctgcaggaagctgctggctgccatcgct
gaggattacaggaaacgcacgccgtacatcgcctacctgaccaggtgtcgccaggggctg
cagacctcccaggcccacctggagaggctcctccagagggtactgagagacaaggaggtg
gccaaccgctacttcaccacggtgtgcgtgaggctgctgctggagcacatggagtccagg
atgttggactttatcaaagccttccaggggtgcacggcgtccgacgataagacggccgcg
gtggaggacttcctgcgctacctgtacggcgccatggcgcgggacaccatctggcagtac
gccagcgaggaccagctgcaggacgctcagatggccattgagcgcagcgtcatgaaccgc
atcttcaagctggccttttaccccaaccaggacggggacatcctcagagaccagcttttc
tatgaacatatccagcggctcacccgagttgtgacggccaatcacaaagctcttcagatc
cccgaggtgtacctgcgagaggcgccctggccctctgcacaggctgagatcaggaccatc
aacgcctacaagaccccgcgggacaaggtgcagtccatcctgcgcatgtgctccaccatc
atgaacctgctgagcctggccaacgaggactcggtccccggggccgacgactttgtcccc
gtgctcgtcttcgtcctcataagggcaaacccgccctgcctgctgtccaccatccagtac
atcaataacttctacgccagccggctgagtggggaggagtgctattggtggatgcagttc
accgcggcggtggaattcattaagaccatcgacgatcgcaagtga
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