KEGG   Gadus morhua (Atlantic cod): 115545211
Entry
115545211         CDS       T10832                                 
Symbol
ercc8
Name
(RefSeq) DNA excision repair protein ERCC-8
  KO
K10570  DNA excision repair protein ERCC-8
Organism
gmh  Gadus morhua (Atlantic cod)
Pathway
gmh03420  Nucleotide excision repair
gmh04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:gmh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    115545211 (ercc8)
  09124 Replication and repair
   03420 Nucleotide excision repair
    115545211 (ercc8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:gmh04121]
    115545211 (ercc8)
   03400 DNA repair and recombination proteins [BR:gmh03400]
    115545211 (ercc8)
Ubiquitin system [BR:gmh04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     115545211 (ercc8)
DNA repair and recombination proteins [BR:gmh03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      115545211 (ercc8)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd EIF3I Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd Beta-prop_EML WDR55 ANAPC4_WD40 NBCH_WD40 Beta-prop_TEP1_C Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_WDR19_1st Beta-prop_RIG_1st Beta-prop_Vps41 Beta-prop_DCAF12 Beta-prop_IFT140_1st WD_LRWD1 Beta-prop_SCAP Beta-prop_SPT8 WD40_RFWD3 Beta-prop_LRRK2 Beta-prop_NUP159_NUP214 Beta-prop_WDR75_2nd Beta-prop_WDR35_TULP_N Beta-prop_Nup120_160 Beta-prop_HPS5 Nucleoporin_N Beta-prop_WDR11_1st
Other DBs
NCBI-GeneID: 115545211
NCBI-ProteinID: XP_030214008
Ensembl: ENSGMOG00000007833
LinkDB
Position
6:16895444..16908532
AA seq 397 aa
MLGYISGRKVGIDDPLRLRRAESTRRLLSLELNHGRDVERIHGNGVNCLDIEAVEGRYML
SGGADGVIVIYDLENYSGKPQYTCKAVGTVGRSSRFAHKFSVETVQWYPFDTGMFISSSF
DKTMKVWDTETLKPAERFMFDGNVYCHHMSPVARKHSLVAVGTKNPKLQLCDLKSGSRIH
VLQGHRAEILSVRWSPRNEHILASASADSTVRIWDVRRASGSLFTLDQHNGDKSKAAAEA
VNTAHNGRVNGLCFSGDGLYLITMGTDDRMRLWNSSNGENTLVNYGKVSNESRKGLKFTV
STGCSLDCVFVPCGSSVAVYGLHSGELVATLRGHYNNVDCCDFHPDYQELYTGGKDCNVL
AWIPALRAPDVEEEREEGVGPVAVNPAFEDAWSSEED
NT seq 1194 nt   +upstreamnt  +downstreamnt
atgttagggtatattagtggaagaaaggttggaatcgacgatccacttcgccttcgacgt
gcagagtccacacgaagactactcagtctggaactgaatcatggcagagatgtggaaaga
atccacggcaacggagtcaactgcctggacatagaggctgtggagggtagatatatgctg
tctggaggagcagacggggtcatcgtgatctatgacctcgagaactacagcgggaaaccc
cagtacacatgtaaagcagttggcaccgtgggaagatcgagtaggtttgcacacaagttc
agcgtggagacggtgcagtggtatccatttgacactggaatgtttatctccagttcattt
gacaagacaatgaaggtgtgggatactgaaacacttaagccggctgagcgcttcatgttc
gacggaaatgtctactgccaccacatgtcccccgtcgcccggaaacatagccttgttgca
gttggcaccaagaaccctaaacttcagttgtgtgacctcaagtcaggctcccgcattcat
gtgctacagggtcatcgggccgagatcctgtctgtgcgatggtcgcccaggaacgagcac
atactggcctccgccagtgcagatagcacggtgagaatatgggatgtacgacgggcctcc
gggagtctgtttaccctggaccaacacaacggagacaagtcgaaagctgccgccgaggca
gtcaacacagcgcataatggcagagtgaatggcttgtgcttcagcggggatgggctctat
ctcatcaccatgggaacggatgaccgcatgcgcctgtggaacagtagcaacggagagaac
acgttggtgaattatgggaaagtgagcaacgagagccgcaaggggttaaagttcacggtg
tcgaccggctgcagcctggactgcgtgttcgtcccgtgcggcagctcggtggccgtgtac
ggcctgcacagcggggagctggtggccacgctgagaggccactacaacaacgtggactgc
tgtgacttccacccagactaccaggagctctacacgggaggtaaagactgtaacgtcctg
gcctggatccccgccctcagggccccagatgtggaggaggaaagagaggagggcgttggg
cctgttgcggtgaaccctgcctttgaagatgcctggagcagtgaggaagactga

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