KEGG   Gadus morhua (Atlantic cod): 115545985
Entry
115545985         CDS       T10832                                 
Symbol
vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
  KO
K19525  vacuolar protein sorting-associated protein 13A/C
Organism
gmh  Gadus morhua (Atlantic cod)
Brite
KEGG Orthology (KO) [BR:gmh00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:gmh04131]
    115545985 (vps13a)
Membrane trafficking [BR:gmh04131]
 Endosome - Golgi transport
  Rab GTPases and associated proteins
   Rab associated proteins
    115545985 (vps13a)
SSDB
Motif
Pfam: VPS13_N VPS13_M VPS13_VAB VPS13_C ATG2_CAD Spo16_N
Other DBs
NCBI-GeneID: 115545985
NCBI-ProteinID: XP_030215398
Ensembl: ENSGMOG00000005126
LinkDB
Position
6:complement(9175801..9214712)
AA seq 3297 aa
MVFESVVVDVLNRFLGDYVVNLDSSQLKLGIWGGDAILRNLEIKENALSQLDIPFKVKAG
HIGRLELKIPWKNLYTQSVEATLDGVYLLVVPTASIKYDAEKEEKQLQEARQRELQRIEE
TKQKAAEQEDPELEKQDTFVEKLVTQVIKNVQVKISNIHVRYEDDVTNPNCPLSFGVSLK
NLSLHTTDENWNSCLLDEKAKLFFKLVQLDSLFAYWNVNSLLFSNHGPEEALRCLQKSIE
LESSLDVSHDFIFRPITADAKLRMNPRSDVDFSSPKVDLVVNLREVAFELNRDQYISILE
LLGSVDLMSRNLPYRKYRPDVHVHSNTHIWWRYVITGVLEVDVKPRLHMWSWQHIRQHRC
MVKGYRDLYKLKITSRKPSEELLKDLEGPEKTLDIFNITLARQQAEMEASKAGLCIYRPG
MKVEEEQSQGWISWAWNWGAEDPEQPKEVDTGGFDRIMTPAEKNKLYTAIGYSETAVNPN
LPKNFEDMKVNFHLEKLSLSIKEKKDKDEVLKLTVETLNSMLTQRPGAQAIKLEAKLKLF
EVTGLAGDRPAPTLLSSRKASMATATPLLSFLFETNPMDQSADQRLRVESQPLEIIYDAS
TVNSMSAFFMPPDDLQLDELTNATLMKLEQFRDRTSTGLMYVIETQKVLDLNVNLMASYV
IIPQTGFYDATQNIMLLDLGHFKMTSMSKKDLPQLCVGSSTIEDIMSRAYDSFNIQLTNL
QFLYSKPDGDWKRARKQKRSSLHILEPVDLKVIFSRAMVVTDSRMAKFKISGELPLLSLR
ISDDRVRGVLELVDSIPLPESRAAPRSTTTSKPRQSYTPQLTPRRPPAVADLRSSLLFES
CETISITSLGSEEDLFYDAPTSPVGDRQFFSDMPGSLQGADSVRRRGLVKKEPQKNMTEL
LLRFEINEMSVQLYRMAKGKEIIVLHLDIDGLGTELKLRSFDMTSNTFLKEICLKCPEYM
DSEEKEVHLITTLDNKEEDLLTLEYTKADRTGPEFKTLHHNTEQLFKVNFSSLDVHLHTE
ALLNSMNFLNSLLPPSSPKEEGGAEELPTIPEEEEEEEGESEEGKKEESVVAKIKSTKKS
KFEDVVNQHIRADLDCLKIFVRGQKARISEITIEGLVSEVLMRKKEMEILAKLKNIIILD
CDKEALYKKTVSIADKEVFDFKMINYTDATEGDAYLDMTKVDTSVSLTVGCIQVVFLNKF
VSSILAFVNNFQAAKEALAEATAQVAEKAATGVMELAERSTRIALNVHFNAPVVFLPQSS
TSANVIVADLGLLSVKNHFTRMPSKTHIKIPPIVDIMTVELRDLNMYRTTYEDGKFQGHT
QLLKPVSLDISIQRNLSSTWYHSIPDIEITAHLKPLNLILSQDDITVVLRTLGENLTETS
DADPPALPPTTGPAPDTLSTKGSQGSGLIGPSPTTGNTVVTAAVVETQKKSKLKDSLKLI
FKFDSMTVVLFKPTGDEPQLDCSHDDELKLAEFTLGTISTSVHLLSDSSMKASVRLANCL
LDDKRPNVQMVTPRMMAMRPGAERNMMVEVNYRQGREGMVLDTVVQDIYLCASMEFLLTV
AGVFLKASEQGFAPAPQIKPASGAGDKRSAAASTTSKESAVAAPVAVSKMEINVVVRNPE
IVFVADLTRADAPALVMTTECELVMKSGAEGALMTAIINDLKVVTCPFLREKRTDNFTTV
LQPCQVFFQKNDPLGSPQTMEVSIHALTLKVSPIIINTILTILSVLTPAAETPQELESPV
VPELCEKSDWKDLKMWFLEEGGDVATKTEAPLIPQGESLKVDINSICVTLEAGLGHRTAP
MLLAKSSFHGNVKNWNTLINLYSRLSLEVHYYNEELGVWEPLLEPLEEDKDSFRPWSLEL
KMKKKSMVYSGLSDEVDFNVPNYKTVISISSLDQLNITLSKCGLTMLSNLGVAFSKQSGE
SFQEDEAPFVVKNRLGLPVSVLYSEMFSPIGRVGFDHTVELQDGESLNMDYKRTTTDSDQ
FSAMTSLSAKDYYIQPNPVGHTSVSVIPLIKVGRGIYSVIHNESRVTRFLVCQIYSVEGS
KYIKIRSPFQIINHFSIPFKVFEGPTCLGTALPEEEFCVPLDSYRSELSLQPLTQDGTEE
DQEKEEQEEQQPHEEQVKEKQQQQEEQEQEFQCSEGFSYEDICQQEPVTSLQRTCHRRGN
EGGVLMVNMVPVKDTVVSKHTGNAGENFDESYVLHLWPSILLRNLLPYPIAYKLQDSGRT
APEVILDPGHSAQLHAAIINRSSLALRLLDYLSQDWTASYGFHANQDEISFIVFQSTRDE
EDEVMDAGSKRPRADLDIAVHVVYEAGRMVVAIHSPYWMVNKTGRLLQYKADDIHRKHAL
DYDMPLLFSFKPRNFLQNNKVRLMISDSELSDDFSLDTVGSYGDVKCKGRYKDYLVGVKI
DACSFSLTRIVTFVPFYLLKNRTKHVILISEEGQDNWTPAPPEQSTIPFWPEKDTKRLKI
RVEGCDAPPRTIDFTRPENCLLLKLDNTLGGFIVEVSLSEHSAVIRFSDYHDGSAPFLII
NHTKTQVVEFHQRSRRDSTTWVPDELEDSSQKEVEGQELEPGKALYYTWAEPTGSRELCW
NCGSYSGSLKNEKDELDDLKKDGKLFLISFYEGLQRVVLFTEERSIYKMLCESEKVQLAE
QEYSLSLQNVGVSLVNNSNSQEVSFIGITSSDVVWESKPKKKSRWKPLSIKEADLLEDAY
NAYVESGSVDNLIVDLETNLQVSLSPGGVDMCVLQPYDAPLRRNYLPGVKVEYSVSPRQK
FYRVKVNRIQIQNQLPGAIFPYVFFPVKLPKSVTMDSEPKPMTDISIVTRTAGHSDISRI
KYFMVLIQEMDLKLDLGFLYAILDLFTPENASVTTPQQEVELFQKDMDYGLAEGATASAC
DNSPISLYEYFHISPIKLHLSLSLSTGGDDGNKEKRESELIPVQSLNLLLKSIGATLTDV
QDVVFKLAFFQLNFQFCTYQELQREVTGHYLKQAIKQMYVLVLGLDVLGNPFGLIRGLSE
GVEAFFYEPYQGAIQGPEEFVEGMALGVKALVGGAVGGIAGAASRITGAMAKGVAAITMD
EEYQQKRREAMNKQPSGLKEGLARGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGM
GKGLVGAVARPTGGFIDMVSSTFQGIKRAAETSQDIESLRPPRFIHEDGVIRPYKELEGL
GSQMLQKIENGRFSKYRYFAHAKVNESDFLMITKRGIFFVTKGTFGQLTCEWQYLFNEFT
KDPLIVEDRRLRIEAKERVKSVFHAKEFGKIINFRTPEIAKWVLTKLEDAMEGFPKY
NT seq 9894 nt   +upstreamnt  +downstreamnt
atggttttcgaaagtgtggtggtggacgtcctcaataggtttttaggagactacgttgtc
aacctcgatagctcacaactcaagctcggcatatggggaggtgatgccattcttagaaat
ttggaaatcaaggaaaatgccttgagtcaactcgacattcctttcaaagttaaagcgggg
cacataggtcggctagagctaaagatcccatggaagaacttgtacactcaatctgtggag
gctacattggatggtgtctacctgctcgtcgtgcccacagccagtataaagtatgacgcg
gagaaggaggaaaagcagctgcaagaggctcgtcaaagggagctccagcggatagaggag
accaagcagaaggctgctgaacaagaggaccctgaacttgaaaagcaggacacttttgtt
gagaagttggtcacacaggtcattaaaaatgtgcaggtcaagatatccaacatccatgtc
cgctacgaggatgatgtcaccaacccaaattgtcctctgtcattcggagtgtcactcaaa
aacctcagcctgcataccaccgatgagaactggaacagctgcctcttggatgagaaggcc
aagctcttctttaagttggtgcagctcgacagcttgtttgcctactggaatgtgaactcc
ttgctcttctccaaccatggtccagaagaggctttgcggtgtcttcagaagagcattgaa
ctcgagagctctctcgacgtcagccatgacttcattttccggcccatcacagcagatgct
aaactccggatgaatcccaggtccgacgtggacttctcgtctcccaaagttgacctggtg
gtcaatctccgagaggtggcctttgagctgaacagggaccagtacatcagcattctggag
ctcctgggttccgtggatctgatgtcgcggaatctgccataccggaagtacagaccggac
gtccatgttcactcaaacacccatatttggtggcgctacgtcatcacaggtgtgctggag
gtcgacgtaaagccccgcctccacatgtggtcatggcaacacatccggcagcaccgctgc
atggtgaagggataccgagacctgtacaagctgaagatcaccagcaggaaacccagcgag
gagctgctcaaagacctggaggggccggagaagacgctagatattttcaatatcaccttg
gccagacagcaggctgagatggaggcaagtaaagcagggctgtgtatttaccggcctggg
atgaaggtggaggaggagcagagccagggctggatcagctgggcatggaactggggagca
gaggaccctgaacagcctaaagaggtggacaccggaggttttgaccgaattatgacccct
gctgagaagaacaaactctacactgccattggctacagcgagacagccgtcaatcccaac
ctgccaaagaattttgaggacatgaaggtgaacttccatctagagaaactgtccttgtcc
atcaaagagaaaaaggacaaggatgaagtcctcaagctgacagtggagacgctcaactcc
atgctcacacagagacccggagctcaagccatcaaattagaagccaagctcaagctgttt
gaggtcactggcctggcgggagaccggccagcccccaccctgctgtcgtccaggaaggct
tccatggcaacggccacgcccttgctcagcttcctgtttgagaccaaccccatggaccag
agcgccgaccagcggctacgcgttgagtcccaacctctggagatcatctacgacgcttca
acagtgaacagtatgtcggcgttcttcatgccgcctgatgacctgcagctagacgagcta
accaacgctactctgatgaaactggagcagttcagagatcggacatcaactgggttgatg
tatgtcatcgagacccagaaggtcctggatctgaacgtgaacctgatggcgtcttacgtc
atcataccccagactggcttttatgacgccacacagaacattatgctgctggatctcggt
cacttcaagatgaccagtatgagtaagaaggacctgcctcagctctgtgtgggaagcagc
accattgaagacatcatgtccagggcttatgacagcttcaacattcaactcaccaacttg
cagttcctatatagcaaaccagacggtgactggaagagggctcgtaaacagaagcgttcc
tccctccacatcctggagcccgtggacctgaaggtgatcttcagccgggccatggtggtc
acagactcccgcatggccaagttcaagatctcgggggagctcccgctgctgtcgctgcgt
atctctgacgaccgggtccggggtgttctggagctggtcgacagcatccctctgcccgag
agccgggcagccccacgcagcaccaccacctccaagccaaggcagtcctacaccccccag
ctcactcccaggagaccccccgccgtggccgacctgcgctcctcactcctcttcgaatcc
tgtgaaaccatcagcatcacctccttaggctcagaggaggacctgttctacgacgctccc
acctcccccgtcggagacaggcagttcttctcggacatgccgggctctcttcagggcgcc
gactcggtcaggagaaggggcttggtgaagaaagaaccgcagaagaacatgacagagttg
ctcttgaggtttgagattaacgagatgtctgtgcagctgtatcgcatggccaaaggtaaa
gagatcatcgtcctccatcttgacatagacggcctcgggacggagctgaaactgcgctcc
ttcgacatgacgtcgaacacgttcctgaaggagatctgcctcaagtgtccagagtacatg
gattctgaagagaaggaggttcatctgataactactttagacaacaaagaggaggacttg
ctcactctggaatatacaaaggctgacaggaccggcccagagttcaaaaccctacatcat
aatacagaacagctctttaaggtgaacttctcctcgctggacgtgcacctgcacacggag
gccctcctcaactccatgaacttcctgaacagcctcctccctccctccagcccgaaggag
gagggaggggcagaggagctgcccaccatacccgaggaggaggaggaggaggagggggag
tccgaggagggcaagaaggaggaatctgtggtagcaaagatcaaatcaactaaaaaatca
aagtttgaggatgtggtaaatcaacacatcagagctgatctggactgtctgaagatcttc
gtccgagggcagaaggccaggatatcagagatcactatagaaggtcttgtttctgaagtc
ttgatgaggaaaaaggagatggagattctggctaaactcaagaacatcatcatcctggac
tgtgacaaagaagctctctacaaaaagacggtatccatagcggacaaggaggtgtttgac
tttaaaatgatcaactacacggatgcaacggagggcgacgcctacctggacatgacaaag
gtggacacctcagtcagcttgactgtggggtgcatccaagtcgtcttcctcaacaagttt
gtctcctccatactggcgttcgttaacaacttccaggcggccaaggaggccctggccgag
gccacggcgcaggtggccgagaaggcggccacgggcgtgatggagctggccgagcgcagc
acgcgcatcgccctcaacgtgcacttcaacgcgcccgtcgtcttcctgccgcagtcctcc
acgtcggccaacgtcattgtggcggacctgggcctgctgtcggtgaagaaccacttcacg
cgcatgccgtccaaaacgcacatcaagatcccgcccatcgtggacatcatgaccgtagag
cttcgcgacctcaacatgtacaggaccacatatgaggatggtaaattccagggacacacg
cagctgttgaagccagtcagcctggacatctctatccagaggaacctgtcctccacctgg
taccacagcatacctgatatagagatcactgctcacctcaaacccttgaacttgatcctg
agccaggacgacatcacagtggtgctgaggactctcggggagaatctgacggagacctcg
gacgccgaccctcctgccctccccccaaccaccggacccgcccccgacaccctgtccacc
aaaggatcccaaggctccggtctgataggcccatccccaaccacaggtaacacagtggtg
acggcggcagtggtggagactcagaagaaaagcaagctgaaggactccctcaaactcatc
ttcaagttcgactccatgacggtggttctcttcaagcccaccggggacgagccacagctg
gactgctctcacgatgatgaactgaagctggcagagttcaccctggggaccatctccacc
tccgtccacctgctgtctgacagctccatgaaggcctcggtccgcctggccaactgcctt
ctggacgacaagagacccaacgtccagatggtcaccccaaggatgatggccatgcgtccg
ggggctgagcggaacatgatggtggaggtgaactaccgtcagggtcgtgaagggatggtc
ctggacactgtggtgcaggacatctacctgtgtgccagcatggagttcctgctcaccgtg
gccggcgtgttcctcaaggcttccgagcagggcttcgcaccggcaccccaaatcaagccc
gccagtggggcaggagacaagagaagcgctgctgcctccaccacgtccaaagagtctgca
gtcgcagctccggtggcggtgtccaagatggagatcaacgtggtggtgcggaaccccgag
atcgtgtttgtggcggacctgacgcgcgccgacgccccggcgctggtgatgaccacggag
tgcgagctggtgatgaagagcggcgcggagggagcactgatgaccgccatcattaacgat
ctcaaggtggtgacgtgtcccttcctaagggagaagaggacggacaacttcaccacagtg
ctgcagccgtgtcaggtgttcttccagaagaacgatcctctgggcagccctcagacaatg
gaggtctccatccacgcactcacactcaaggtatcgcccatcatcatcaacaccatcctc
accatcctgtcggtgctgacacccgcggctgagacgccccaagagctcgaaagcccagtg
gtgccggagctctgcgagaaaagtgactggaaggacctcaaaatgtggttcctggaggag
ggcggggacgtagccaccaagacggaggctccgttgataccccagggagagtcgctaaag
gtggacatcaactcgatctgcgtgactctagaggccgggctggggcaccgcactgccccc
atgcttctggccaagtcttcgttccacgggaacgtgaagaactggaacaccctcatcaac
ctgtacagccgactcagcctggaggttcattattacaatgaggagctgggggtttgggaa
ccactgctggagccattagaggaggacaaagacagcttcagaccctggtccctggaactg
aagatgaagaagaagtcgatggtctactcaggcctctcggatgaggtggacttcaacgtg
ccaaactacaagaccgtgatcagtatcagcagcctggaccagctaaacatcaccctgtcc
aagtgtggactgactatgctcagtaacctgggcgtggcattctccaagcagtccggggag
tccttccaggaggacgaggccccctttgtggtgaagaaccggctgggtctgcccgtgtcg
gtcctttacagcgagatgttcagccccatcggccgcgtgggcttcgaccacaccgtggag
ctccaggacggggagagcctcaacatggactacaagagaaccaccaccgactcggaccag
ttctccgccatgacctctttgagtgccaaggactactacatacagcccaatcctgtgggc
cacacgtcggtcagtgtgatccccctgatcaaagtgggccggggcatctacagcgtcatc
cacaacgagtcgcgggtcactcgcttcctggtctgccagatttactctgtggagggaagc
aagtacatcaagatccgctcccccttccagatcatcaatcacttctccatcccgttcaaa
gtatttgagggaccaacatgtctggggacagctctgcctgaagaggagttctgtgttcct
ctggactcctacaggtctgagctgagcctacagccactgacccaggatggcactgaggag
gatcaggagaaggaggagcaggaggaacagcagccccatgaggaacaggtgaaggaaaaa
cagcagcagcaggaggaacaggagcaggagtttcagtgttctgagggcttcagttacgag
gacatctgccaacaagagcccgtgaccagcctgcagaggacatgccatcgccgcggcaac
gagggtggcgtgctgatggtcaacatggtgccggtgaaggacaccgtggtgtccaaacac
accgggaacgccggggagaactttgatgagtcctacgtcctccacctgtggccatccatc
ttgttacgcaacctccttccctaccccatcgcttacaagctacaggatagcggacggact
gcccctgaggtcatcctagacccgggccactcggcccagctccacgcggccatcatcaac
cgctccagcctggctctgcgactccttgactacctgtcccaggactggactgcctcatac
ggcttccatgcaaaccaagatgagatctccttcatcgtgttccagtccacgcgcgacgag
gaggacgaggtgatggacgccggcagcaagaggccccgggccgacctggacatcgccgtg
cacgtggtctacgaggcgggccgcatggtggtggccatccactcgccctactggatggtg
aacaagaccgggaggctgctgcagtacaaggccgacgacatccatcggaaacacgcgctg
gactacgacatgcccctgcttttctccttcaagccccgcaacttcctgcagaacaacaag
gtgcgtcttatgatctcagacagcgaactctccgatgatttctccctggataccgtcggt
agctatggagatgtgaaatgtaaaggcagatacaaagactacctggtcggggtgaagatc
gatgcctgcagtttcagcctgacacgcatcgtgacctttgtgcccttctacctgctgaaa
aaccgcaccaagcatgtgatcctgatcagcgaggagggccaggacaactggacaccagct
ccgcccgaacagtcgaccattcccttctggcctgagaaggacaccaagaggctgaagatc
agggtagaaggatgtgacgcgcctcctcgaaccatcgacttcacaaggccagagaactgc
cttttgctgaagctggacaacacactgggcgggttcattgtggaagtgagcctatcggag
cattcggctgtgatccgtttctcagactaccacgacggctccgcccccttcctcattatc
aaccacaccaagacccaagttgtggagttccaccaaaggagtcggagagactcgaccacg
tgggtgcctgatgagctggaggacagctctcagaaggaggtggaggggcaggagctggag
ccaggtaaagctctgtactacacctgggcagagcccaccggctccagggagctgtgctgg
aactgtggcagctactctgggtccctgaagaacgaaaaggacgagcttgatgatttgaag
aaagacggaaagcttttcctcatctctttctatgaaggcctacagcgggtcgtgctgttc
acggaggagcgttccatctacaagatgctgtgcgagagcgagaaggtgcagctggccgaa
caggagtatagcctctccctacagaatgtgggcgtgtctctggtcaacaacagcaacagc
caagaggtctccttcattgggattacaagttcggatgtggtgtgggagtccaagcccaag
aagaagagtcgttggaagccgctgagcatcaaagaggctgacctgttggaggatgcatac
aacgcctatgtggagtcgggctccgtggacaatctcatagtggacctggagaccaacctc
caggtgtccctgtcccctggcggcgtggacatgtgtgtgctgcagccctacgacgcgccc
ctgcggaggaactacctgcctggcgtgaaggtggagtacagcgtctcgcctcgccagaaa
ttctacagggtcaaagtcaaccgcatacagatccagaatcagttgcctggagccatcttc
ccctatgtcttcttccccgtcaaactaccaaagtcggtcaccatggattctgagcctaaa
cccatgacggacatcagtatagtgaccaggactgcaggccattcagacatctcccgcatt
aagtactttatggtgttgatccaggagatggacctgaagctggacctcggcttcctctac
gccatactggatctgttcacaccggagaacgctagcgtcactacgcctcaacaagaagtg
gagctgtttcagaaggacatggactacgggctggctgagggagccaccgcctctgcctgt
gacaactctcccattagcctctatgagtacttccacatctctcccatcaagctccacctg
agcctctctctgagcaccggaggggacgacggcaacaaggagaagagggagtcggagctg
atccccgtccagtcgctcaacctgctgctgaagagcataggagcgacgctgaccgacgtg
caggacgtggtctttaaattagccttctttcagttgaacttccaattctgcacctatcag
gagcttcagagggaggtcacaggacattatttaaagcaggctatcaaacagatgtatgtg
ttggtgctggggctggacgtgctgggcaaccccttcggtctgatcagagggctgtctgag
ggagtagaggctttcttctatgaaccctaccagggcgccatccaggggccagaggagttt
gttgaaggcatggctctgggggtgaaggctctggttggtggagctgttggcggcatcgcg
ggggcggcctctaggataacaggcgccatggcgaagggggtggcagccatcaccatggac
gaggagtaccagcagaagaggagggaggccatgaacaaacagcccagcggcctgaaggaa
gggctggcccggggaggaaaggggctggtgtcgggatttgtcagtggcatcaccggaatt
gttaccaagccgataaaaggagcccagaaggagggggccgcgggcttcttcaagggcatg
ggcaagggtctggtgggagcggtcgcaaggccaaccgggggcttcatcgacatggtcagc
agcaccttccaagggatcaagagggcggccgagacctcccaggacatcgagtcgctacgg
ccccctcgcttcatccacgaagacggtgtcatacgcccatataaggagctggaggggctg
ggcagccagatgctgcagaaaatcgaaaacggacgtttctccaagtatagatactttgct
cacgccaaggtcaatgagtcggacttcctgatgatcaccaaaaggggcattttctttgta
accaagggtacgtttggtcagctgacctgtgagtggcagtacctgttcaacgagttcacc
aaggaccccttgatcgtagaagaccgacgacttcgcatcgaagctaaggaaagggtcaag
tcagtcttccacgctaaagagttcgggaagatcatcaacttccgaactccagagattgcc
aagtgggttctcaccaagttggaagacgcaatggaaggtttccccaaatactga

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