Gadus morhua (Atlantic cod): 115546441
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Entry
115546441 CDS
T10832
Name
(RefSeq) LOW QUALITY PROTEIN: runt-related transcription factor 1-like
KO
K08367
runt-related transcription factor 1
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
115546441
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gmh03000
]
115546441
Transcription factors [BR:
gmh03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
Runt
115546441
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Runt
RunxI
ZrgA
Motif
Other DBs
NCBI-GeneID:
115546441
NCBI-ProteinID:
XP_030215783
LinkDB
All DBs
Position
7:5797255..5858120
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AA seq
505 aa
AA seq
DB search
MAFNSIFGAQTSPCQRENDPAPGRRFSPPSTTLSSGGKMSEALPLGGQEAGGGAALVGKM
RMVDRGMVEVISDHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVT
VMAGNDENYSAELRNATAAAKAGVARFNDLRFVGRSGRGKSFTLTITVFTSPPQVATYQR
AIKITVDGPREPRRHRQKLDEVKAGSLAFSERLSELEQLRRSSMRVSPPHGLSHHHGHAH
HHGHAHHHHHHASSVNSRPAPGGLGSAPFSSQSHAQIAESRQMQSSPPWSYDQSYPYLGQ
MTTPTVHSATPLSPSRSSLSELSSRLTGPDLAAXSDPRLSLDRPFPSLNDARCFADPRPP
LHYPPGLRLLCLCPAHNAVTMATARAAXPGRYHPYLAPPPYPTNHVPSQGGGAFQATPTP
YHLYYSAAAGSYQFSVMAGGGGAGGGSGGGGDSSRSPPRHASTGSALLHPSLPNQSEGLG
VEAESSGHSGSPASMVAAEAVWRPY
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcaacagcatcttcggagcccagacttcgccatgccaacgggaaaacgacccc
gcccctggtcggcggttcagccccccctccaccaccctctcctccgggggtaagatgtct
gaggccctgcctctcggaggccaggaggccggaggtggagccgccctggtgggcaaaatg
cggatggttgaccgtggcatggtagaggtgatatccgaccaccctggtgagctggtgcgg
acggacagtccgaacttcctgtgctccgtgctgcccacccactggcgctgcaacaagacc
ctccccatcgcatttaaggtggttgccctgggcgacgtccccgacggcaccctggtgacg
gtgatggcggggaacgacgagaactactctgccgagctgcggaacgccacggccgccgcc
aaggccggggtggcgcgcttcaacgacctgcgctttgttggccgcagcgggcgagggaag
agcttcaccctgaccatcaccgtgttcaccagccccccccaggtggcgacctaccagagg
gccatcaagatcaccgtggacggcccccgggaacccagacgccacagacagaagctggac
gaggtgaaggcggggtctctggcgttctccgagcggctctctgagcttgagcagctgagg
cggagctccatgagggtatcgcccccccacggcctctcccaccaccacggccacgcccac
caccacggccacgcccaccaccaccatcaccacgcctcctcggtcaatagtcgccctgcc
cctggtgggctaggctctgcccccttctcaagccaatcacacgcacagatcgcagaatcc
aggcagatgcagtcgtctccgccctggtcgtacgaccaatcgtatccttacctgggccag
atgaccacgcccacagtccactcggccacgcccctctcccccagtcgctcctccctcagc
gagctgtcctcgcggctcaccggccccgacctcgccgccntctccgacccccgcctctcc
ctcgatcgccccttcccctcgctgaacgacgcccgctgcttcgccgacccacggcccccc
ttgcactacccccccgggctccgcctcctttgcctatgccccgcccacaatgccgtcacc
atggcgacggccagagcggccncgcctggccgctaccacccctacctggccccgcccccc
taccctactaaccacgttccctcccagggaggcggggccttccaggccacgcccaccccc
taccacctgtactactccgccgccgctggctcgtaccagttctccgtcatggcaggaggt
ggcggagccgggggtgggtctggagggggcggagactcgtcgaggtcgccgccccgtcac
gcctccacaggctccgccctcctgcacccctcgctgcccaatcagagcgaggggctgggc
gtggaggcggagtcgtcggggcacagcggctcgccggccagcatggtggcggccgaggcc
gtgtggcggccatattga
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