Gadus morhua (Atlantic cod): 115546585
Help
Entry
115546585 CDS
T10832
Symbol
cltc
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh04142
Lysosome
gmh04144
Endocytosis
gmh05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
115546585 (cltc)
04142 Lysosome
115546585 (cltc)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
115546585 (cltc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gmh04131
]
115546585 (cltc)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gmh04147
]
115546585 (cltc)
Membrane trafficking [BR:
gmh04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
115546585 (cltc)
Exosome [BR:
gmh04147
]
Exosomal proteins
Proteins found in most exosomes
115546585 (cltc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
115546585
NCBI-ProteinID:
XP_030216048
Ensembl:
ENSGMOG00000012290
LinkDB
All DBs
Position
7:18552945..18585590
Genome browser
AA seq
1679 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNT
PIRRPISADSAIMNPASKVIALKDAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV
ALVTDNAVYHWSMEGDSQPIKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG
NQPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRIS
GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRIAVRNNLAG
AEELFARKFNNLFAAGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQQGQTSPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKAVDPTLALSVY
LRANVPNKVIQCFAETGQFPKIVLYAKKVGYTPDWIFLLRNVMRINPEQGLQFAQMLVQD
EEPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAI
LGNQMFTNYDRAHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLS
VEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLTELFESFKSFEGLFYFLGSIV
NFSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKSLILVVRGQ
FSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPY
YDSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRKDPELWASV
LLETNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFKKFDVNT
SAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKELVKEAIDSYIKADDPSAYME
VVQAADQSGNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQ
QVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA
CVDGEEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEFDNAIITMM
NHPTDAWKEGQFKDIITKVANVELYYKATQFYLEFKPLLLNDLLIVLSPRLDHSRAVNYF
SKVKQLPLVKAYLRSVQNHNNKSVNEALNNLFITEEDYQAVRTSIDAYDNFDNISLAQRL
EKHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMLYASESKDTELAEELLAWFLQ
EDKKECFAACLFTCYDLLRPDVVLETAWRHNIMDFSMPYFIQVMREYLSKVDKLETSESM
RKEEEQATETQPIVYGTPQLMLTAGPTVPVAAQPAYAYGYQAPAGYAPPPAQPGFGYGM
NT seq
5040 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatcctgcctatccgcttccaggagcacctgcagctccagaacctgggcatc
aatccggcaaacattggcttcagcacgctgaccatggagtcggacaagttcatctgcatc
cgggagaaggtgggcgagcaggcgcaggtggtgatcatagacatggccgaccccaacacg
cccatccgcaggcccatctctgccgacagtgccatcatgaaccccgccagcaaggtcatc
gcacttaaagacgccgctaaaacccttcagatcttcaacatcgagatgaagagcaagatg
aaggcgcacaccatgacggacgacgtcaccttctggaagtggatctccctcaacacggtg
gcgctggtcaccgacaacgccgtgtaccactggagcatggagggcgactcgcagcccatc
aaggtgttcgaccgccactccagcctggcgggctgccagatcatcaactatcgcacggac
gccaagcagaagtggctgctgcttatcggcatctcggcccagcaaaaccgtgtggtcggc
gccatgcagctgtactccgtggacaggaaggtgtcccagcccatcgagggccacgccgcc
agcttcgcccagttcaagatggagggcaacgcggaggagtccactctgttctgcttcgct
gtgcgaggccaggccggaggaaagctgcacatcatcgaagtggggacaccaccgactggc
aaccagccatttccaaagaaagcagtggacgtgttcttccccccggaggcgcagaacgac
ttccctgtggcaatgcagataagctccaaacaggatgtggtcttcctcatcaccaaatat
ggctacatccacctgtacgatctggagacgggcacctgcatctacatgaacaggatcagt
ggggaaaccatctttgtaaccgcaccacacgaggccaccgccggcatcatcggagtcaac
aggaaaggacaggtgctgtcggtgtgcgtggaagaggagaacatcatcccctacatcacc
aacgtgctgcagaaccccgacctggcgctgcgcatcgccgtgcgcaacaacctggcgggc
gcagaggagctcttcgctcgcaagttcaacaacctgttcgccgccgggaactactcggag
gctgccaaggtggcggccaacgcaccaaagggcatcctgcgtaccccggacaccatccgg
cgcttccagagcgtccccgcgcaacagggccagacctctcccctactccagtactttggc
atcctgctggatcagggccagctcaacaagtttgagtccctggagctgtgcaggccggtg
ctgcagcagggacgcaaacagctgctggaaaagtggctcaaggaagacaagctggagtgc
tcggaggagctgggggacctggtgaaggcagtggaccccaccctggctctcagcgtgtac
ctgagagccaacgtgcccaacaaggtcatccagtgcttcgctgagaccgggcagttcccc
aagatcgtcctgtacgccaagaaggtgggctacaccccagactggatcttcctgctgagg
aacgtgatgaggatcaacccagagcagggcctgcagtttgcacagatgctggtgcaggac
gaggagcctctggcagacatcacccagatcgtggacgtgttcatggagtacaacctgatc
cagcagtgcacgtccttcctccttgatgccctgaagaacaacagaccctcagagggaccc
ctgcagactcgcctgctggagatgaacctcatgcacgcaccacaggtcgctgacgccatc
cttggcaaccagatgttcaccaactacgaccgcgcccacatcgcccagctgtgcgagaag
gctggcctcctgcagagggcgctggagcactacacagacctgtacgacatcaagcgggca
gtggtgcacacgcacctcctcaaccccgagtggctggtgaacttcttcggctccctgtcg
gtggaggactccctggagtgcctgcgggccatgttgtcggccaacatccggcagaacctg
cagatctgcgtccaggtggcctccaagtaccacgagcagctctccacgcagtccctcacc
gagctctttgagtccttcaagagcttcgaaggtctcttctacttcctgggctccattgtc
aacttcagtcaggacccagaggtgcacttcaagtacatccaggcggcctgcaagacgggc
cagatcaaagaggtggagaggatctgtcgggagagcaactgctacgacccagagcgcgtc
aagaacttcctcaaggaggccaagctcacagaccagctgccactcatcattgtgtgcgac
cgcttcgacttcgtccacgacctggtgctctacctctaccggaacaacctgcagaagtac
atcgagatctacgtgcagaaagtgaaccccagccgccttcccgtggtcatcggggggctc
ctggacgtggactgctcagaggacgtgatcaagagcctgatcctggtggtccgcggccag
ttctccaccgacgagctggtggctgaggtggagaagaggaacagactgaagctgcttctg
ccctggctggaggcccgcatccacgagggctgcgaggagccggccacccacaacgccctg
gccaagatctacatcgacagcaacaacaaccctgagcgcttcctgcgggagaacccttac
tacgacagccgggtggtgggcaagtactgcgagaagagggacccccacctggcctgtgtg
gcctacgagaggggccagtgtgaccaggagctcatcaatgtctgcaatgaaaactcgctg
ttcaagagcctgtcccgctacctggtccgccgcaaggaccccgagctgtgggccagcgtg
ctgctggagaccaaccccttcaggaggcctctcatcgaccaggtggtgcagacggccctc
tccgagacccaggacccggaggaggtgtcggtgacggtcaaggccttcatgacggccgac
ctacccaacgagctgatcgagctgctggagaagatcgtgctggacaactcggtcttcagc
gagcacagaaacctccagaacctcctgatcctgacggccatcaaggcggaccgcacccgc
gtgatggagtacatcaaccggctggacaactacgacgcgcccgacatcgccaacatcgcc
atcagcaacgagctctttgaggaggccttcgccatcttcaagaagtttgacgtcaacacc
tccgctgtgcaggtgctcatcgagcatattgggaacctggaccgggcctacgagtttgcg
gagcgctgcaatgaaccggcggtgtggagccagctggccaaggcccagctgcagaaggag
ctggtcaaagaggccattgactcctacatcaaggctgacgacccctccgcctacatggag
gtggtccaggccgcggatcagagcggtaactgggaggacctggtgaagttcctccagatg
gcgcgcaagaaggcccgcgagtcgtacgtggagacggagctcatcttcgccctggccaag
accaaccgcctggctgagctggaggagttcatcaacggaccgaacaacgcccacatccag
caggtgggcgaccgctgctacgacgagaagatgtacgacgcggccaagctgctctacaac
aacgtgtccaacttcggccggctggcctccacgctggtgcacctgggcgagtaccaggcc
gccgtggacggggcccgcaaggccaacagcacccgcacctggaaggaggtgtgcttcgcc
tgcgtggacggcgaggagttccggctggcccagatgtgcggcctccacatcgtggtgcac
gccgacgagctggaggagctcatcaactactaccaggaccgcggctacttcgaggagctg
atcaccatgctggaggcggctctgggccttgagcgtgcccacatgggcatgttcaccgag
ctggccatcctctactccaagttcaagccccagaagatgagggagcacctggagctcttc
tggtcccgcgtcaacatccccaaggttctgcgggcggccgagcaggcgcacctgtgggcc
gagctggtcttcctgtacgacaaatacgaggagttcgacaacgccatcatcaccatgatg
aaccaccccacggacgcctggaaagagggccagttcaaggacatcatcaccaaggtggct
aacgtggagctgtactacaaagccacccagttctacctggagttcaagcccttgttactg
aacgacctgctcatcgtgctctcaccaagactggaccactctcgcgctgtcaactacttc
tccaaggtgaagcagctgccccttgtcaaggcctacctgcgttccgtacagaaccacaac
aacaagtcggtcaacgaagcacttaacaacctcttcatcacagaagaggactatcaggcc
gtgaggacatcgatagacgcctacgacaactttgacaacatctcgctggcccagcggctg
gagaagcacgagctgatcgagttcaggagaatcgccgcctacctattcaagggcaacaac
cgctggaagcagagcgtggagctctgcaagaaggacaagctctacaaggacgccatgctg
tacgcatcggagtccaaggacacggagctggcggaggagctgctggcctggttcctgcag
gaggacaagaaggagtgctttgccgcctgcctcttcacctgctacgacctgctgcggccc
gacgtggtgctggagacggcctggcgccacaacatcatggacttctccatgccctacttc
atccaggtcatgagggagtacctcagcaaggtggataagttggaaacctcagagtccatg
aggaaagaggaggaacaggcaacggagacgcagcctatcgtctatggcactccccagctg
atgctgacggcgggccccaccgtaccggtcgcggcccagcccgcctacgcctacggttac
caggcaccggccggctacgcaccgccacctgcccagccgggcttcggctacggcatgtaa
DBGET
integrated database retrieval system
