Gadus morhua (Atlantic cod): 115546612
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Entry
115546612 CDS
T10832
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115546612 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gmh03041
]
115546612 (ddx46)
Enzymes [BR:
gmh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115546612 (ddx46)
Spliceosome [BR:
gmh03041
]
Complex A
U2 snRNP components
U2 related factors
115546612 (ddx46)
Complex B
115546612 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
115546612
NCBI-ProteinID:
XP_030216075
Ensembl:
ENSGMOG00000007990
LinkDB
All DBs
Position
7:complement(16518828..16532575)
Genome browser
AA seq
1098 aa
AA seq
DB search
MKTTMGRESRHYRKRSSSRGRSGSRSKSRSPDKRSKKEDRSGNRDKDRNRKERSRSRDRR
RSRSRDRKRPRRSRSRERRRSRSRERKRSTSRNRGRRSRSNSPSKSRKTDEKLEGGDNGL
SKSKEKEIDVSEKKKTKEEKEDEKVEDQDFDQNKLEEEMRKRKERVEMWREEQRKKAIEN
IGEIKRELEERKQGKKWSLEDDEDDDEEGGLIPMEGDEEDEEEEGEGKEEKKESEMKKES
EIKKESDVKQEKPEEEVEEEKKETPMELEEEAMEEEEEEEEDDVDPLDAYMEGVKEEVKK
FNMGGMRGNDKRGMMVTNVTVVKSKKGSLTHKKKGELMINDQDAMEYSSEEEEVDLQTAL
TGYQTKQRKVLEPVDHQKIQYEPYRKNFYVEVPELARMTPEDVHCYRLELEGITVKGKGC
PKPIKTWVQCGTSMKILNALKRHSYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFL
LPMFRHIMDQRPLEESEGPIALIMTPTRELALQIAKECKKFSKTLNLRVVCVYGGTGISE
QIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRTTYVVVDEADRMFDMGFEPQVMRIV
DNVRPDRQTVMFSATFPRAMEALARRILAKPIEVLVGGRSVVCSDVQQHVLVIEEDKKFL
KLLEILGHYQEKGSVIIFVDKQEHADALLKDLMKASYPCMSLHGGIDQYDRDSIINDFKN
GACRLMVATSVAARGLDVKQLILVVNYNCPNHYEDYVHRAGRTGRAGNKGYAYTFITDDQ
ARYGGEIVKALELSGSPVPPELEKLWSSFKDQQKAEGKSIKSSSGFSGKGFKFDETEHAL
ANERKKLQKHALGLQDSDDEDGPLDIDEQIESMFNSKKRVKDLSAPGSSGGSGGAMSSSG
GVTSLGPPSAGNIQKLEMAKRLALRINAQKNLGAEAQDVMQQATNAILRGGTIMAPSVSA
KTIAEQLAEKINAKLNYTPVEKLEEERQAAEQAETVKRYEEELEINDFPQTARWKVTSKE
ALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVTKAKAEITRLIKEEL
IRLQNSYQPTSKGRYKVL
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaccactatgggacgagaatcacggcattacagaaaacggtcgtcctccagaggc
cggtcgggtagccggtccaagagccgctctccggacaaacgatccaagaaggaagaccgc
tccgggaaccgagacaaggaccgtaaccgcaaggagcgttcccgcagccgggaccggcgc
aggtcgaggtccagagacagaaagcggcccaggcgctctaggagcagggaaaggagacgg
tctagaagcagagagcggaagaggtcaaccagtcggaaccggggtcgtaggtctcgaagc
aacagtccaagcaaaagcaggaagactgatgaaaagttggaaggtggagataatggtttg
tctaagagcaaagagaaagaaattgatgtctccgaaaagaaaaagacaaaggaagagaaa
gaggacgaaaaagttgaagatcaagactttgaccagaataagctggaggaggagatgagg
aagaggaaggagcgtgtggagatgtggagggaggagcagaggaagaaggccatcgagaac
attggcgagatcaagagggagctggaggagaggaagcagggcaagaagtggagtctggag
gacgatgaagatgacgatgaggaaggaggtctcattcccatggaaggagatgaggaggat
gaggaggaggagggtgagggcaaggaggagaagaaggagagcgagatgaagaaggagagc
gaaattaagaaggagagcgatgtaaagcaggagaagcccgaggaagaggtggaggaggag
aagaaggagactcccatggagctggaggaggaggcgatggaggaggaagaggaggaggag
gaggatgatgtggaccccttggatgcttacatggaaggcgtgaaggaggaggtgaagaag
ttcaacatgggaggcatgaggggaaacgacaagagaggcatgatggtgaccaacgtcacg
gtggtaaaatccaagaaggggtctcttacccacaagaagaagggcgagctgatgatcaat
gaccaggatgccatggagtactcctctgaggaagaggaagtggacctgcagacggctctg
acaggctaccaaaccaagcagaggaaggtgctggagccagtggaccaccagaagatccag
tacgagccttaccgcaagaacttctacgtggaggtccccgagctggccaggatgactcca
gaagatgtgcactgctacaggctggagctggaaggcatcacggtcaaagggaagggctgt
cctaagcccataaagacgtgggtgcagtgtggcacctccatgaagatcctcaacgccctc
aaacggcacagctacgagaagcccacccccatccagacacaggccatccctgccatcatg
tctgggcgtgacctcatcggcatcgccaagaccggcagcggcaagaccatcgccttcctg
ctgcccatgttccgacacatcatggaccagaggcccttggaggagagcgagggccccatt
gcgttgatcatgacccccaccagggagctggcgctgcagattgccaaggagtgcaagaag
ttctccaagacgctgaacctccgggtggtgtgcgtgtacgggggcactggcatcagcgag
cagatcgctgagctgaagagaggagctgagatcattgtctgcacacctggaagaatgatt
gacatgttgggagccaacagcggacgcgtcactaacctgaggaggaccacctacgtggtg
gtggacgaggccgaccggatgttcgacatgggctttgagccgcaggtgatgcgcatcgtg
gacaacgtgcggccggaccgccagacggtgatgttctctgccaccttcccccgggccatg
gaggcgctggcccgccgcatcctggccaagcccatcgaggtgctggtgggcggccgcagc
gtggtctgctcggacgtgcagcaacacgtgctggtgatcgaggaggacaagaagttcctg
aagctactggagatcctgggccactaccaggagaaaggctccgtcatcatctttgtggac
aagcaggagcacgccgacgcgctcctcaaggacctgatgaaggcctcctacccctgcatg
tccctgcacggaggcatcgaccagtacgaccgcgacagcatcatcaacgacttcaagaac
ggcgcgtgccgcctgatggtggccacctcggtggcggcccgggggctggacgtcaagcaa
ctcatcctggtggtgaactacaactgccccaaccactacgaggactacgtgcaccgcgcc
gggcgcacgggccgcgccgggaacaagggctacgcctacaccttcatcacggacgaccag
gcccgctacggaggggagatcgtcaaggccctggagctctctgggtccccggtgccccct
gagctggagaagctctggtcctccttcaaagaccagcagaaggctgaagggaagagcatc
aagagcagcagcggcttctcggggaagggcttcaagttcgacgagacggagcacgccctg
gccaacgagaggaagaagctccagaagcacgcgctcggcctgcaggactctgatgacgag
gacgggcccctggatattgacgagcagatcgagagcatgttcaactccaagaagcgggtg
aaggacctctcggcgccgggatcctccggaggctcgggcggggccatgtcctcctctggg
ggggtgaccagcctgggcccgccctccgcagggaacatccagaagctggagatggccaag
cggctggcgctccgcatcaacgcccagaagaacctgggggccgaggctcaggacgtgatg
cagcaggccaccaacgccatcctgcgcggcggcaccatcatggcgccctcggtgtcggcc
aagaccatcgccgagcagctggcggagaagatcaacgccaagctgaactacacgccggtg
gagaagctggaggaggagcggcaggcggcggagcaggccgagacggtcaagagatacgag
gaggagctggagatcaacgacttccctcagacggcgaggtggaaggtgacgtccaaggag
gctctccagaggatcggggaatactctgaggctgccatcaccatccggggaacctacttt
cctcctgggaaggaacccaaggagggggagcgcaagatctaccttgctattgaaagtgca
aatgaactggctgtgacgaaagccaaggcagaaatcaccaggttgatcaaggaagagctc
atcagactacaaaattcttaccagccgacgagcaaagggagatacaaggtgttgtaa
DBGET
integrated database retrieval system
