Gadus morhua (Atlantic cod): 115547000
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Entry
115547000 CDS
T10832
Symbol
vps11
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh04140
Autophagy - animal
gmh04148
Efferocytosis
gmh05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
115547000 (vps11)
04148 Efferocytosis
115547000 (vps11)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
115547000 (vps11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gmh04131
]
115547000 (vps11)
Membrane trafficking [BR:
gmh04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
115547000 (vps11)
Hops complex
115547000 (vps11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_N
VPS11_C
TPR_Vps41
Clathrin
zf-C3HC4_2
zf-rbx1
zf-C3H2C3
zf-RING_2
zf-RING_5
zf-C3HC4
TPR_GEMI5
WD40_Prp19
Beta-prop_EML_2
zf-ANAPC11
Kbp-5
zf-RING-like
DLP_helical
Motif
Other DBs
NCBI-GeneID:
115547000
NCBI-ProteinID:
XP_030216746
Ensembl:
ENSGMOG00000015886
LinkDB
All DBs
Position
7:complement(21551610..21562081)
Genome browser
AA seq
926 aa
AA seq
DB search
MAAFLQWRRFVFFDKESVKDPVDNGKNFYLPSGISASDSGRGHIVLGDMDGQIWLLPRSM
KLESFQAYKLRVTHLHQLKQHSILVSVGQDEEGINPLVKVWNLDKKDSGNPLCTRIFPAI
PGNKPTEVSCLSVHENLNFMAIGFTDGSVVLTKGDITRDRHSKTLTLHEGTCPITGLSFR
QVGKVTHLFVATLEKVHCYTLSIKEYPRLELDTHGCALRCSSLTDPSQDSQFIVAGDECV
YLYQPDERGPCFAFDGQKLLAHWYRGYMLLLTKDAKSPSKAAFASRETSPSEKQLLTIYD
LDNKFIAYSAPFDDIIDVLAEWGSFYVLTRDGKMFVLQEKDTQTKLEMLFKKNLFVMAIN
LAKSQHLDSDGLSEIFRQYGDHLYLKGDHDGAIQQYIRTIGKLEPSYVIRKFLDAQRIHN
LTAYLQALHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKSSESEVHFDVEIAIKVLRQA
GYHSHAVFLAEKHAQHEWYLKIQLEDLKNYLEALRYIGRLPFEQAESNMKRYGKTLMHHV
PDGTTSLLKDLCTDYKPKKEGADRETPQRGLEVKANSEEFIPIFANNRRELKAFLEHMIE
VEPFSPAGVYDTLLELRLHDWAHEEEPEQKKVLQGAALFLLHSDNTVFDKALVLCQMHNF
KEGVLYLYEKGKLYQQIMHYHMQNEEYGKVVEACKRYGDQEVCLWEQALGYFARKEEDCK
AYISQVLQHIDQNNLMPPLLVVQTLAHNSTATLSVIKDYLVNKLQRESQQIEDDERKIRQ
YREETAHLRTEIQDLRTSAKIFQKTKCNMCSSPLELPSVHFLCSHSFHQHCFESYADSEA
ECPTCLPENRKVMDMLRVQDQKRDLHDHFTRQLRSSNDGFSVVADYFGRGVFNKLTLVTD
PPGSRAASSLETDLQRDLLTHTKRNS
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atggcagcattcttacagtggcgaagatttgtgttttttgataaagaatcggttaaagat
cctgtagacaatggaaaaaacttttatcttcccagcggaatatcggcgtctgattccggc
cgcggtcacattgttctcggagatatggatggccagatctggcttttgccacgctcgatg
aagcttgagtccttccaggcttacaagttgcgtgtgacacacctgcatcaactcaagcag
cacagcatccttgtctcagtggggcaggatgaagaaggaataaaccctctggtgaaggtg
tggaatctcgacaagaaggatagtgggaatcccttgtgcactaggattttccccgcaatt
cccgggaataagccaacagaggtgtcatgcctcagtgtgcacgagaacctcaacttcatg
gccattggctttacagatggcagtgtggtgctaaccaagggggacatcaccagagaccgc
cacagcaaaacgctgacgctgcacgagggcacctgtccaatcaccggcctctccttccgc
caggtcggcaaggtcacacacctgtttgtagcgacgctggaaaaagtccattgttacacg
ctgtccatcaaggagtaccccagactggagctggacacacacggctgtgccctgcgctgc
tcctccctcaccgacccgtcccaggactcccagttcatcgtggcgggggacgagtgcgtg
tacctgtatcagcccgatgagaggggcccctgctttgccttcgacgggcagaagctgctg
gcccactggtacagaggctacatgctgctgctcaccaaggacgccaaatcgcccagcaag
gcagcgtttgcgagcagagagacgtccccctcagaaaagcagctgctgaccatctacgac
ctggacaacaagttcatcgcctacagcgccccctttgacgacatcatcgacgtcctggcc
gagtggggctccttctatgtgctcaccagggacggcaagatgtttgttctgcaggagaag
gacactcagactaaactagagatgcttttcaagaagaacctgtttgtgatggctataaac
ctggctaagagccagcacctggacagtgacgggctgtcggagatcttcaggcagtacgga
gaccacctctacctcaagggggaccacgacggggccatccagcagtacatacgaaccatt
gggaagctggagccgtcctacgtgatccggaagttcctggacgcccagcggatccacaac
ctgacggcctacctgcaggccctgcaccggcagtccctggccaacgcggaccacaccacc
ctgctgctcaactgctacaccaagctgaaggacagctccaagctggaggagttcatcaag
agcagcgagagcgaggtccacttcgacgtggagatcgccatcaaggtgctgcggcaggcg
ggctaccacagccacgccgtcttcctggcggagaagcacgcgcagcacgagtggtacctg
aagatccagctggaggacctcaagaactacctggaggcgctgcgctacatcggacgcctg
cccttcgagcaggcggagagcaacatgaagcgctacggcaagaccctcatgcaccacgtc
cccgacgggaccacctctctcctcaaggacctctgcaccgactacaagcccaagaaggag
ggcgccgacagggagacgccgcagagagggctcgaggttaaggccaactcggaggagttc
atcccaatctttgccaacaaccggcgggagctcaaggccttcctggagcacatgatcgag
gtggagcccttctccccggccggggtgtacgacacgctgctggagctcaggctgcacgat
tgggcccacgaggaggagcccgagcagaagaaggtcctgcagggggcagcactcttcctt
ctgcacagcgacaacacagtgtttgacaaggccctggtcctctgccagatgcacaacttc
aaagaaggagtgctgtacctctacgaaaagggcaaactgtaccagcagatcatgcactac
cacatgcagaacgaggagtacggcaaagtggtggaggcctgcaagcgctacggggaccag
gaggtgtgcctgtgggagcaggcgctgggctacttcgcccggaaggaggaggactgcaag
gcctacatcagccaggtcctgcagcacatcgaccagaacaacctgatgcccccgctgctg
gtggtgcagacgctggcgcacaattcgacggccacgctgtccgtcatcaaggactacctg
gtgaacaaactgcagagggagagccagcagattgaggacgacgagcgcaagatccgccag
taccgcgaagagactgctcacctccgcaccgagatccaggacctgaggaccagcgctaag
atcttccagaagaccaagtgcaacatgtgcagcagtccgctggagctgccctcggtccac
ttcctgtgcagccactccttccaccagcactgcttcgagagctacgccgacagcgaggcc
gagtgcccgacctgcttgccagagaaccgcaaggtcatggacatgctgcgcgtgcaggac
cagaaacgggacctccacgaccacttcaccagacagctccgcagctccaacgacggcttt
tcggtggtggccgactacttcggcaggggggtgttcaacaagctgaccctggtcacggac
ccccccgggagcagggctgcgagcagtctggagacagacctccagagagacctcctcacc
cacaccaagaggaacagctag
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integrated database retrieval system
