Gadus morhua (Atlantic cod): 115547317
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Entry
115547317 CDS
T10832
Symbol
rabgef1
Name
(RefSeq) rab5 GDP/GTP exchange factor isoform X1
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
115547317 (rabgef1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gmh04131
]
115547317 (rabgef1)
Membrane trafficking [BR:
gmh04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
115547317 (rabgef1)
Protein recycling
Other Rab GTPase associated proteins
115547317 (rabgef1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
Motif
Other DBs
NCBI-GeneID:
115547317
NCBI-ProteinID:
XP_030217317
Ensembl:
ENSGMOG00000001896
UniProt:
A0A8C5CWP5
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Position
7:complement(9849132..9866527)
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AA seq
557 aa
AA seq
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MSQKPERRGIHVDQSELLCKKGCGYYGNAAWQGLCSKCWREEYQRAKERQIQEDWAFAEK
LQREEEVAYASSQGPSSQPGPQPQAQATPPHAALTPFSKFEEKKTNEKMRKVTTVKKFFS
PSTRIAPKKGLVEREDRTLRAWRGIFSPSWEMGSPTEALVARLREGHEGKTSSPSISRQA
SLETDRVSKDFMEFLKTMQRPGREIHKQCRAFIESMANKKQDLGADELSECVQDFYQNLS
DRLMSHFKGSSESVERVMDQVEKYIMTRLYKSVFCPETTDDEKKDLATQHRIRALHWVTI
EMLCVSMDEEIPEVSDNVVKAITDVIEMDSKRVPRDKLACITQCSKHIFSAIKITKKEPA
SADDFLPALIYIVLKANPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLD
AQSLNLDTDEFERYMSGQASPRRPTDDGGWPLEAGPSPQGGAAAAASSVAVNPALAQLHH
SLEQLSGLSERQDRLMEGARGLQEELVSWEEGVRREVQHILERYPLEVRPPPASAIDTEN
AETDRLPPPLTPQVFAG
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgagccagaagccggagcgccgcgggatccacgtggaccagtcggagctgctctgcaag
aagggatgtggttactatggcaacgcagcctggcagggcctgtgctccaagtgctggcgg
gaggagtaccagcgagccaaggagagacagatccaggaggactgggccttcgcagagaag
ctgcagcgcgaagaggaggtggcctacgccagcagccaggggccctccagccagcccggg
ccccagccccaggcccaggccaccccgccccatgccgccctgacccccttctccaagttt
gaggagaagaagaccaacgagaagatgcgtaaagtcaccacggtgaagaagttcttcagc
ccctccacgcgcatagcccccaagaaagggcttgttgagagggaggacaggaccctcagg
gcttggagagggatcttctccccctcgtgggagatgggttctcctaccgaagcgctggtg
gctaggctgagagagggccacgaggggaagacctccagcccgtccatcagccggcaggcc
agcttggagacggaccgcgtctccaaggacttcatggagttcctgaagaccatgcagcga
ccaggccgggagatccataagcagtgtcgggccttcatcgaaagcatggccaacaagaag
caggaccttggtgcagatgaattgtcagagtgcgtccaagacttctaccagaacttgtcg
gatcgtctgatgagccacttcaaaggctcgtctgagtctgtagagagggtgatggaccag
gtggagaagtacatcatgactcgtctgtataagagtgtcttctgcccggaaacaaccgac
gatgagaaaaaggaccttgccacgcagcacagaataagggcattgcactgggtgaccatt
gaaatgctgtgtgtgtccatggacgaggagatccctgaagtgtcggacaatgttgtgaaa
gcaataacggacgtgatcgagatggactccaagcgggtgccgcgggacaagctggcgtgc
atcacacagtgcagcaagcacatcttcagcgccatcaagatcaccaagaaggagccggcg
tcggccgacgacttcctgcccgcgctcatctacatcgtgctgaaggccaacccgccgcgg
ctgcagtccaacatccagtacatcacgcgcttctgcaaccccagccggctgatgaccggc
gaggatggctactacttcaccaacctgtgctgcgccgtggcgttcatcgagaagctggac
gcccagtccctcaacctggacaccgacgagtttgagcgctacatgtcaggccaggcctcg
cctcgccggcccaccgacgacggcggctggcccctggaggccgggccctcccctcaaggc
ggcgctgccgccgccgcctcctccgtggccgtgaacccggcgctggcccagctccaccac
agcctggagcagctgtcgggcctgagcgagcgtcaggaccggctgatggagggggcccgc
ggcctgcaggaggagctggtgtcctgggaggagggcgtgcggcgggaggtgcagcacatc
ctggagaggtaccccctggaggtccggcccccgcccgcctccgccatcgacacggagaac
gccgagacggaccggctgcccccgccgctcacgccccaggtgtttgctggctag
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