Gadus morhua (Atlantic cod): 115547663
Help
Entry
115547663 CDS
T10832
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
gmh Gadus morhua (Atlantic cod)
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmh03021
]
115547663
03036 Chromosome and associated proteins [BR:
gmh03036
]
115547663
Transcription machinery [BR:
gmh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
115547663
Chromosome and associated proteins [BR:
gmh03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
115547663
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
SPT6_acidic
Tex_central_region
Spt6_S1
S1
Tex_YqgF
HHH_9
S1_RRP5
HHH_3
SH2
Tex_N
Motif
Other DBs
NCBI-GeneID:
115547663
NCBI-ProteinID:
XP_030217912
Ensembl:
ENSGMOG00000007109
LinkDB
All DBs
Position
7:complement(14873802..14891978)
Genome browser
AA seq
1736 aa
AA seq
DB search
MSDFIESEAEESEEELEEKDLKPKKTQRFLEDDDEEEEENTEDQDERGNLRGLIDDGDDE
EEEEAGSKSGAGSDSDEEVKHRRKKRSFDDYLDDDDLDLIEENLGVKVKRRKKKYERVKT
MEDDDEDDDGKDLIADEIFTGDADGDLEEGETVDVPIQRHEDEEGEDEESDIDDFIVDDD
GQPITSKRGKKYSGFTDAALQEAQEIFGGDFDFADFDADAYEQGDEEEEDTDKRQPKRMH
GRKSIFELYEPSELESSHMTDQDNEIRSTDMPERFQLRSIPIKPAEDEELEEEAEWIFRH
GFSTLTISMQESTDYLDRGTTTNFSRKGPSTIAKIKEALNFMRNQHFEVPFIAFYRKEYV
EPELNINDLWKVWQWDEKWTQLKMRKQNLTRLFRRMQSYQYEQISADPDKPLADGIRPLD
TADIERLKDVQSLDELNDVYNHFLLYYGRDIPKMQNAAKVSKRKKKMKKIIEVNEDGEEE
EVEVEEDDETQKGPDLKLASRRDMYTICQGVGLDGLAKKFGLTPEQFGENLRDSYQRHET
EQFPAEPMELAKDYVCSQFSTPEAVLEGTRYMVAMQLAREPLVRHVLRQTFQERAKVNIK
PTKKGKKEVDEAHFGYSFKYLKNKPVKELNGEQFLKMCLAEEEGLLTIEICIDLMGIKGF
AGDQAYFEEIKQFYYRDEFSHQVQEWNRQRTLAIERSLTQFLYPQMAKELKSKLIAEAKE
NIVRSCCRRLYNWLKVSPYRPDQQVEEDDDDLMDDSQGKGIRVLGVAYAPSRDTPVFCAL
INGEGEVVDFLRLPYFMSRRNAFREDEREKKAKDIENLKKFLKSKKPHVVAVGGENRDAQ
MIMEDIKKAVSELEQESSIPPVGVELVDNELATLYMNSKKSEAEFRDYPPLLRQAVSIAR
KIQDPLVEYTQVCSSDDDILCLKLHPLQEQVVKEELLTALYCEFINRVNEVGVDVNRGIS
HPYTQSLVQYVCGLGPRKGSHLLKILKQNNTRLENRTQLVTMCHMGPKVFINCAGFIKID
TASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPER
LKDLDLDAFAEELERQGYGNKGITLYDIRAELSCRYKDLRVQYRAPNTEEVFNLLTKETP
ETFYIGKLITSCVTGIAHRRPQGESYDQAIRNDATGLWQCPFCQQDNFPELSEVWNHFDS
GSCPGQAIGVRSRLDNGVQGFIPTKFLSDKVVKHPEERVTVGMTVHVRIMKIDIEKFSVD
LTCRTSDLADKGNEWKLPKDSYYDFDTETEDHKHEEDLKKKQQRTPYIKRVIAHPSFHNI
SFKQAEKMMESLDQGDLVIRPSSKGENHLTVTWKVAEGIYQHVDVREEGKENVFSLGHTL
WIGTEEFEDLDEITARFIQPMAAFARDLLGHKYFHECHGGDRKKMEEMLVKTKREKPTFI
PYFISACRDLPGKFILGYQPRGKPRVEYVSLSPDGFRYRSQMFTSVNGLFRWFKDHYQEP
IPGITPSNSSRTRTPVSLNATPANINIADLARAVNSLPRNMTSQMFNAISAVTGQGQNAN
STPAQWGSSQYNYSGGGGGGSTGGGGGSSSAYHVFATPQQPMATPMMTPSYSYTTPSQQA
LGTPQYPGSTPQSSHGHSSHHTHHSGGPGPVSGTPTSSSSSRGRTPQQQQPQPKSGGSSS
AVDWGKMAEQWLKEKEAEGRKKTPRMTPRPSPSPMIESTPMSIAGDATPLLDEMDR
NT seq
5211 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacttcattgagagtgaagctgaagagtcagaggaggagttggaagaaaaagat
ctcaaacccaaaaagacccagaggtttctggaagatgatgatgaggaggaagaggagaac
actgaagatcaggatgaaagggggaatttaagaggactcatcgacgatggagacgatgag
gaggaggaggaagcagggagcaagagtggagcaggcagtgattcggacgaggaagtcaaa
catcgacgcaagaagcgcagctttgatgactatctggatgacgacgaccttgacctcatt
gaggagaatttaggagtcaaagtgaaaagaaggaaaaagaagtatgagcgcgtcaagacg
atggaggacgacgatgaggacgacgacgggaaggacctcatcgccgacgagatcttcacg
ggggacgccgacggcgacctcgaggaaggggagacggtggacgtacctattcagcgtcat
gaggacgaagagggagaggatgaggagtcagacattgacgatttcattgtggatgacgac
ggccagcccatcacttctaagaggggcaaaaaatattctggcttcacggatgccgccctc
caggaagcccaggagatcttcggtggcgactttgactttgccgacttcgatgcggacgcg
tacgagcagggcgacgaggaagaggaggacacggacaagaggcagcccaagcggatgcac
gggaggaagagcatcttcgaactgtacgagcctagtgagctggagagcagccacatgacg
gaccaggacaacgagatccgctccacagacatgcccgagaggttccagctgagatccatc
cccatcaaaccagccgaggacgaggagctagaagaggaagccgagtggatcttcagacac
ggattctccaccctgaccatctccatgcaggagagcacagactacctcgacagggggaca
accacaaacttcagcaggaaaggtcccagcaccatcgccaagatcaaggaggccctgaac
ttcatgaggaaccagcactttgaggttcccttcatcgcgttctacaggaaggagtatgtg
gagccggagctgaacatcaacgacctgtggaaggtgtggcagtgggacgagaagtggaca
cagctgaagatgcggaagcagaacctgacccgcctgttccggaggatgcagtcgtaccag
tacgagcagatctccgccgacccggacaaacccctggctgatggcatccgccccctggac
actgcagatatagagaggctgaaagacgtccagtcgttggacgagctgaacgacgtgtac
aaccacttcctgctctattacggccgcgacatccccaagatgcagaacgccgccaaagtg
agcaagaggaagaagaagatgaagaagatcattgaagtgaacgaggacggcgaggaagag
gaggtggaggtggaggaagacgacgagacccagaaaggaccggatctgaagctggcgtcc
cgtagagacatgtacaccatatgtcagggcgtgggcctcgacgggttggccaaaaagttt
ggactgactccagagcagtttggggagaatctgagggacagctaccagcggcacgagacg
gagcagttccctgcagagcccatggagttggccaaggactacgtctgcagtcagttcagc
accccggaggcagtcctggaggggacccgctacatggtggccatgcagctggcccgggaa
cccctggtgagacacgtgctcaggcagaccttccaggagcgggccaaggtcaacatcaaa
cccaccaagaagggcaaaaaggaagtggacgaggcccacttcggctactccttcaagtac
ctgaagaacaagccggtgaaggagctcaacggggaacagttcctcaagatgtgtctggcg
gaggaggagggcctgctcaccatagagatctgtatcgacctgatgggcatcaaggggttt
gcgggggaccaggcctactttgaggagatcaagcagttctactacagggacgagttcagc
caccaggtgcaggagtggaacaggcagcggacgctggccatcgagaggtccctcacccag
ttcctgtacccccagatggccaaggagctgaagagcaagctgatcgccgaagccaaggag
aacatcgtcaggtcttgctgcaggcgtctctacaactggctgaaggtgtccccctaccgg
ccggaccagcaggtggaggaggacgatgacgacctgatggacgacagccaggggaaaggc
atccgcgtgctgggcgtggcctacgctcccagcagagacacgccagtcttctgcgcgctg
atcaacggagaaggagaggtggtggacttcctgcgtctgccctacttcatgtccagaagg
aacgctttccgggaagatgaacgagagaagaaggcgaaggacatcgagaacctcaagaag
tttctgaagtccaaaaagcctcacgttgtggcggtgggaggggagaaccgggacgcccag
atgatcatggaggacatcaagaaggcggtcagcgagctggagcaggagtcgtctatcccc
ccggtgggggtggagctggtggacaacgagctggccaccctatacatgaacagcaagaag
tcagaggcggagttcagggactacccccccctactgcgacaggccgtgtccatcgcccgc
aagatccaagaccccctggtggagtacacgcaggtgtgcagcagtgacgatgacatcctc
tgcctcaaactgcaccccctgcaggagcaagtggtcaaggaggagctgctgaccgccctg
tactgtgagttcatcaaccgggtgaacgaggtgggcgtggacgtgaaccggggcatctcc
cacccttacacccagagcctggtccagtatgtctgcggcctggggcccaggaaggggtcc
cacctcctcaagatcctgaagcagaacaacacgcggctggagaaccgcacccagctggtg
accatgtgccacatggggcccaaggtgttcatcaactgcgctggtttcatcaagatcgac
acggcctccctgggagacagcaccgactcgtacatcgaggtgctggacggctcgcgggtc
caccccgagacgtacgagtgggcgcgcaagatggcggtggacgccctggagtacgacgag
tctgcggaggacgccaacccggccggagccctggaggagatcctggagaacccggagcgc
ctcaaggacctggacctggacgccttcgccgaggagctggagagacagggctacggtaac
aagggcatcacgctgtacgacatccgcgccgagctcagctgtcgctacaaggacctgcgt
gttcaatacagggcgcccaacacggaggaggtgttcaacctgctcaccaaggagacgcca
gagaccttctacataggtaaactgatcaccagttgtgtgacgggcatcgctcaccggcgc
ccccagggggagagttacgaccaggccatcaggaacgacgccacgggcctgtggcagtgt
cccttctgccagcaggacaacttcccggagctcagtgaggtgtggaaccactttgacagc
ggctcgtgtccgggccaggccatcggggtgcgcagccgtctggataacggggtgcagggc
ttcatccccacaaagttcctcagtgacaaggtggtcaaacaccctgaggagagagtcacg
gtgggaatgacggtacatgtccgcatcatgaagatcgacatcgagaagttcagcgtggac
ctgacctgccgcacctccgaccttgcggacaagggcaacgagtggaagctcccgaaggac
agctactacgacttcgacacggagacggaggaccacaaacacgaagaggacctcaagaag
aagcagcagaggacgccctacatcaagcgtgtgatcgcccacccaagcttccacaacatc
agcttcaagcaggcggagaagatgatggagtccctggaccagggagacctggtcatccgg
cccagcagcaagggggagaaccacctcacggtcacctggaaggtggcggagggtatctac
cagcacgttgacgtgcgggaggagggcaaggagaacgtgttcagtctgggacacaccctg
tggatcggcaccgaggagtttgaggacctggatgagatcacggcgcgcttcatccagccc
atggcggcgttcgccagggacctgctgggacacaagtacttccacgagtgccacggcgga
gacaggaagaaaatggaggagatgctggtgaagaccaagagggagaagcccaccttcatc
ccctacttcatctcggcctgcagggacctgcccgggaagttcatcctggggtaccagccc
agaggcaagcctcgggtggagtacgtgagcctcagtccggatggcttccgctaccgctcg
cagatgttcacctcggtcaacggcctgttccgctggttcaaggaccactaccaggagccc
atccccggcatcacccctagcaacagcagcaggaccaggacgcccgtatcgctcaatgct
acgccggcaaacatcaatatcgcagacctggcgcgagcggtcaactccctgccccgcaac
atgacctcccagatgttcaacgccatctccgcggtgacgggccagggccagaacgccaac
agcacgccggcccagtgggggtccagccagtacaactacagcgggggcggcggcgggggc
agcaccggcggcggagggggcagctcctcggcctatcacgtgtttgccacgccccagcag
cccatggcgacgcccatgatgacgcccagttactcgtacacgacgcccagccagcaggcg
ctgggcacgccccagtacccgggctccacgccccagtcgtcccacggccactcctcgcac
cacacccaccacagcgggggcccggggcccgtgtccggcacgcccacgtcctccagctcg
tcccgcggccgcacgccacagcagcagcagccgcagcctaagtccgggggcagcagctcg
gccgtggactggggcaagatggccgagcagtggctgaaggagaaggaggcggaggggagg
aagaagacgccgcgcatgaccccccgaccctcgcccagccccatgatcgagagcacgccc
atgtccatcgccggcgacgccacgcccctcctggacgagatggaccgatag
DBGET
integrated database retrieval system
