Gadus morhua (Atlantic cod): 115547845
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Entry
115547845 CDS
T10832
Name
(RefSeq) SR-related and CTD-associated factor 4-like
KO
K13167
SR-related and CTD-associated factor 4
Organism
gmh Gadus morhua (Atlantic cod)
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmh03021
]
115547845
03041 Spliceosome [BR:
gmh03041
]
115547845
Transcription machinery [BR:
gmh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115547845
Spliceosome [BR:
gmh03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
115547845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
115547845
NCBI-ProteinID:
XP_030218187
Ensembl:
ENSGMOG00000015188
LinkDB
All DBs
Position
7:17507360..17519272
Genome browser
AA seq
1301 aa
AA seq
DB search
MEAVNAFNQELFSLMDAKPPISRAKMVSITKSAIKAMKLYKHVVQIVEKFVKKCKPEYKV
SGLYVVDSIVRQSRHQFGADKDVFGPRFTKNINGTFDNLCLCPMEDRSKLVRVLNLWQKN
GVFKIEIIQPLLAKATGSASGTSSFLSMDDPGSPPSPIKEPMVPVVERSTIATIPQLPNS
DALAAVAQLFQSSEGQQLQQMLQNFQQQPLKPPMENRTQPAPPQPHLQVQSQTHLQAHLQ
AHLQPQLQAHPQPHLQAHHQPQLQAQPQPNLQPEPHLPVQPQSHLPTLPQPYQQAHLQAQ
PQPHLQAQPQPHLQAQPQPHLQAQPQPHLQAQAQPQPHLQAQPQPHLQAQAQPQPHLQAQ
PQPHLQAQPQPQLQAHNFLPGLGMGALHPPLSTQTAQQKAAFDRKLLDRFDYDDEPDAGE
ETKKEEALSSPPSSIQQPGGFHQNMERFSSQMMGTTQDPSQQAQLPNGQLLGYGMPPGRL
LPGMMSPMGRAASGHPMPGSAGAPGFPGGAYPSHNAAPQQDMEVERSGFRESRHGRRSLS
GSRSPKRRCSRSTSRTRRSRHRRSRSRDRRPHSPHSRSAERQEREKERERRQKGLPPPIA
DTLSVCSTTLWVGQLDKRTQQQDVACLLEEFGPIDSINMIPPRGCAYIVMVERQDAYRAL
QKLGRGNHKVNQKAIKIAWALNKGIKPDLKPLWDVELGVTYIPWAKIREDQLEDIQEGGV
LDVDTLSPEWKGATSLEPQGELPHNGRSEPAQNQDASAPPAHPPQGPPGQLAMVGPGSLQ
PPGYPGPMGMPPPSFPPGVPPPPFIRPGFNRMQMPTGYPHAGGMPLGPPPPGQGVEDLSM
DPAGLANRNGDERPEGPHPYNNQMGPMGPQGSGPPGTLPPIGGLLGARPGIIPLQRPPGL
PPPHMQRFPPPHGPRPLHPNMPPMLPQMLPRGPHMPMMRHDLPPPLPGGFGMMPPHIMRG
PFPPHGPPHGPPPPPGLPPPPPFVRPAGLPPGAEEPDDGPFRGGRPGFREPEAEWERERE
RGFGAGRRPFDGGRGPEGERAGDGRERLGGWQEEGGNARGGGWDRDRERERDGERDRDRD
RDRNRDRERPRDPERVRDPERVRDPERPRDPERPRDPERVRDPDRPRDPDRPRDPERPRD
PERPRDPERPRDPERERDRDRDRERHDRRERRGSPEADRDRGRGEDGERERGRGEGGERG
RGERRGSENKDKDRPRRSEKRERSSRWDNDDRLAELENMAVLRNSESAEPAAAAVAAAVA
VELPGKPSEQLVSEPSEQKTQSEPCDARVPAPSEPSQSDST
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggaagccgttaacgcctttaaccaagagttgttttctctgatggacgccaagccaccc
atctctcgggccaagatggtctccatcaccaagtctgccataaaagcaatgaagctgtac
aagcatgtggttcagattgtcgaaaagtttgtcaaaaagtgcaaaccagagtacaaggta
tctggcctctacgtggtggactccatagtgaggcagtccaggcaccagtttggagccgac
aaggacgtgtttgggcccaggttcaccaagaacatcaacggaacgtttgacaacctctgc
ctctgcccaatggaggataggagcaaactggtgcgggtgctcaacctgtggcagaagaac
ggagtgtttaagatagagatcatacagcctctcctggccaaggccactggatctgccagc
gggacttccagctttctgagcatggacgacccaggctctcctccgtctccgatcaaagaa
cccatggttcccgtggtggaacgctccaccatagcgaccatccctcagctgccaaactct
gatgccttggccgccgtggcccaactctttcagtcctcagagggacaacagcttcaacag
atgctccagaactttcagcagcagcctttgaagcccccgatggagaatcgcacacagcct
gcacccccccaaccccaccttcaggtccagtctcagacccacctccaggctcacctccag
gctcacctccaacctcaactccaggcccatccacaaccccacctccaggcccaccaccaa
cctcaactccaggcccaaccccaacccaacctacagcccgagccccacttaccggtccag
ccacaatcccatctgccgaccctgccacaaccctaccaacaggcccacctccaggcccag
cctcagccccacctccaggcccagcctcagccccacctccaggcccagcctcagccccac
ctccaggcccagcctcagccccacctccaggcccaggcccagcctcagccccacctccag
gcccagcctcagccccacctccaggcccaggcccagcctcagccccacctccaggcccag
cctcagccccacctccaggcccagccgcagcctcagctccaggcccataacttccttccc
ggtctgggcatgggtgccctgcatcctcctctgtccacccagacggcccagcagaaggca
gccttcgacaggaaactactggaccgcttcgactatgatgacgagccagatgctggggaa
gaaaccaaaaaagaagaggccttgtcatccccgccttcaagtatccagcagcccggaggc
ttccaccagaacatggaacgcttctcatcacagatgatgggcaccacgcaagatccatca
cagcaggctcagcttcccaatgggcagctcctgggatacggcatgccaccagggcgcctc
ttaccagggatgatgtctcctatggggcgggccgcatctggtcatcccatgcctggctct
gctggggctccgggctttccagggggggcatatccatcccataatgcagcgccacagcag
gacatggaagtggagcgatctggcttcagggaaagccgccacggccgcaggtccctctct
ggctccaggtctcccaagaggagatgctctcgctccacctcccgcacgcgacgttcccga
caccggcgctcgcgctccagggaccggcgtccccactccccccactcccgctcggcggag
cgccaggagcgggagaaggagcgcgagcggcggcagaaaggcctcccgccgcccatcgcc
gacaccctgagcgtgtgcagcaccactctgtgggtgggccagctggacaagaggacccaa
cagcaggacgtggcctgtctgctggaggagttcggacccatcgactccatcaacatgatc
ccgccccgtggctgtgcctacatcgtcatggtggagcgacaggacgcctacagggccctg
cagaaacttggaagaggcaaccacaaggtcaaccagaaggccattaagatcgcgtgggct
ttgaacaaaggcatcaagccggacctgaagcccctctgggatgtggagctgggggtcacc
tacataccctgggccaagatcagggaggaccagctcgaggacatccaggaagggggcgtg
ctggacgtcgacacactatccccagagtggaaaggagcgacgagcctggagccgcaggga
gagctccctcacaacgggcgctctgagcctgctcagaaccaggacgcatcggctccaccg
gctcacccgccccagggtcccccggggcagctggcgatggtgggccccggttccttgcag
ccgccgggctatcctgggcccatgggcatgccgccgccctccttcccacccggcgtcccc
ccgccgcccttcatcagacccgggttcaaccgcatgcagatgcccacaggttacccccat
gcaggtgggatgcctctaggaccgcctccccctgggcaaggggtcgaggacctctccatg
gacccagctggactggccaataggaacggtgacgagaggccggaggggccgcacccgtat
aacaaccagatgggacccatgggtccccaggggagcggaccaccgggaaccctcccccct
atcggggggctgctgggggcccggcccggcatcatacccctccaacgccccccgggtctc
cccccgccccacatgcagcggttccctcccccccacggcccgagacccctccatcccaac
atgccccccatgctgccccagatgctgccccgggggccccacatgcccatgatgcgccac
gacctgcccccgcccctcccgggaggcttcgggatgatgccgccccacatcatgagggga
cccttccccccgcacggccccccccacggcccccctcccccgccggggctccctcctccg
cccccgtttgtccgaccggcggggctcccgcccggggcagaggagccggacgacgggccc
ttcaggggcggccggcccgggttcagggagccggaggctgagtgggagcgggagagggag
cggggcttcggagcggggaggcgtccgttcgacggcggccgggggcccgaaggggagagg
gcgggcgacgggagggagcgtctcggcggctggcaggaagaagggggcaacgccagggga
ggaggctgggatagggaccgggagagggaacgggacggagagcgagatagggacagggac
agggatcgtaacagggatcgagagaggccccgggatccggagagggtcagggatccggag
agggtcagggatccagagaggcccagagatccagaaaggcctagggatccggagagggtc
agggatccggatcggcccagggatccggatcggcccagagatcccgagaggcccagggat
cccgagaggcccagggatcccgagaggcccagggatcccgagagggaacgggatcgggac
cgggaccgggagcgtcatgaccggagagagaggcggggcagcccggaggcggaccgggac
cgtgggcggggcgaggacggagagcgggaacgcgggcggggcgaaggaggagaaaggggg
aggggagagaggagaggatcggagaacaaagacaaggacaggccgcggcggtccgaaaaa
agagaaagaagttcacgctgggacaacgacgatcggctggctgaactggaaaacatggcc
gtcctccgtaactctgagagcgcagaacctgctgctgctgctgtggctgctgctgtggct
gtggaactccccgggaaacccagcgagcagttggttagtgaaccctctgagcaaaagaca
caatcagaaccttgtgacgctcgagttccagccccttcagagccttctcaaagtgacagc
acatag
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