Gadus morhua (Atlantic cod): 115547872
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Entry
115547872 CDS
T10832
Symbol
ddx20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
gmh Gadus morhua (Atlantic cod)
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gmh03041
]
115547872 (ddx20)
Enzymes [BR:
gmh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115547872 (ddx20)
Spliceosome [BR:
gmh03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
115547872 (ddx20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
CMS1
AAA_19
Motif
Other DBs
NCBI-GeneID:
115547872
NCBI-ProteinID:
XP_030218232
Ensembl:
ENSGMOG00000024195
LinkDB
All DBs
Position
1:13550921..13556108
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AA seq
850 aa
AA seq
DB search
MAACVRKAAHDIDARSRTDDVLLSEGIDFNSLLLSTPVLEGLSASGFQKPSPIQLKAIPL
GRCGLDLIVQAKSGTGKTCVFSTIALDSLILENVTTQVLVLAPTREIAVQIHSVLMAIGS
AMEGLQCHVFIGGTAVSQDKINLKKCHIAVGSPGRIKQLIELGMLSTASIRLFVLDEADK
LLEEGSFQEQINWIFSSLPANKQMLALSATYPESLAQHLSNYMSEPTFVRLNPKDPSLKG
LRQYYKLVNSHAHAHKVFEEKVLHLLELFSKVPFNQALVFSNLHSRAQHLADILSSKGLP
AVCISGGLTQDQRLEAMSKLKQYQCRVLISTDLTARGIDAEKVNLVINLDIPKDWETYMH
RIGRAGRYGTQGLAVTYCCHGEEENKMMAIAQKCNLKLSMLPSPIEPGLMEESCDWGVSV
EASTLGPTSQLFPKQEKKKNRKAPDVPVATAAASSSDQEASSTSSAPPRDPGPGERWPKK
SRAPPEPRREKVEESRPKPARPIKHAAAPQARHTPAPQAPQGPTRKELQEALPKIPPLSS
FKNLSHSLMTLEEAELDFQAFISEGPGRSVEVIRQFKGQNDDGQPSMHTESHVLHDDEDN
ALKRSLQSGGRAAAPAPRRTPPPRRTPPVKMEVDPAHRRSGSGSSSSSSSSSSSSDDDDE
GMEEERPKAKAPPRSGSSQTDARQRSQAEPGPNKSKAQVPALPPTASHRTSRTPHGGALE
REKPARGGHPVPWREERSRADPSREGRGADGAVGRKEQRVCDKRRRDDEGREEIMEGQPR
GEGSSSSEEEEEEEWSNADDWRAYYRSWEQYYEAMACHPQPGYHSYYSQANSWMAAYRMN
TVYINELLKH
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgtgcgtgagaaaagccgctcatgatatagatgcgagaagccggactgatgat
gtcctcttatccgagggaatcgactttaattctttgctgttgtccaccccagtactcgag
ggactttctgcgtcgggatttcagaaaccatcaccgattcagctcaaggcaatcccactt
ggtcgctgtggtcttgatttgatcgtacaagcgaaatcaggcacagggaagacatgtgtc
ttcagcaccattgcactggattcactgatcctggaaaatgtcaccactcaagttttggta
ctggctccgacccgggagatagctgttcagatccattcagtgttgatggccatcggcagt
gccatggaaggtctgcagtgtcatgtctttataggcggcacggcagtgagccaggataaa
atcaacctgaagaagtgtcacattgcagtgggctccccaggccgtatcaagcagttgata
gagttggggatgttgtctacagccagcattaggctctttgtcctggatgaggctgacaaa
ctgctggaggagggcagtttccaggaacaaatcaattggatattttcctctctaccagcg
aacaaacagatgcttgccctttctgccacctacccagaatcccttgcacaacacctgtcc
aactacatgagcgagcccacttttgttcgactcaaccccaaagaccctagtcttaaaggt
ttgaggcagtattacaagcttgtgaactcgcatgctcatgcacataaggtctttgaggag
aaagtcctgcatttgcttgagctcttcagcaaagtacctttcaaccaagcacttgttttc
tccaatctacattcaagggctcaacacctggcagacattttgtcctctaaaggcctccct
gcggtctgtatctcaggtgggctaactcaagaccagaggttggaggccatgtccaaactg
aaacaatatcagtgtagagtactcatctctactgatctgaccgcccggggtatcgatgcg
gagaaggtgaacctggttataaaccttgatatccccaaggactgggaaacgtacatgcat
cgcattggacgggccggccgctatgggactcaggggctggcggtgacatactgttgccat
ggtgaggaggagaacaagatgatggctattgctcaaaagtgcaacctgaaattgtccatg
ctgccatccccaatagaaccagggttgatggaggagtcgtgcgactggggcgtcagcgtg
gaggcctccacactggggccgacatcccaactcttccccaagcaagagaagaagaagaac
aggaaggctcctgacgttcctgtcgccaccgccgccgcctcctccagtgaccaggaggcc
tcctccacgtcctcggctccacccagggaccctggtccaggcgagcgttggcccaagaag
agccgtgctccgcccgagccaagaagagagaaagtggaggagagccgtcccaaaccggcg
cgtcccatcaagcacgcagcagccccccaagccaggcatacgccagccccccaagccccc
caaggccccactcgtaaggagctccaagaggccctccctaagatcccgcccctcagctcc
ttcaagaacctgagccacagcctcatgaccctggaggaggcggagctagacttccaagcc
ttcatctccgagggcccggggaggtcggtggaggtcatcaggcagttcaaaggtcagaac
gacgacggccagccgagtatgcacaccgagtcacacgtgctccacgacgacgaggacaac
gcactgaagcgctcgctgcagagcggcggccgcgccgcagcgccggcgccacgcaggacg
ccgccgccgcgcaggacgccgcccgtcaagatggaggtcgaccccgcccatcggaggtct
ggctctgggtcttcaagctcgtcctcgtcctcctcatcctcctcggatgatgacgacgaa
ggcatggaggaggagcggcccaaagcgaaggctccgccgcgctcgggctcgtcccagacc
gacgcacggcagaggtcccaagccgagcccggtcccaataaaagcaaggctcaggttccc
gccctcccgccaacagcgtcccatcggacaagtcgcacaccacacgggggcgccctcgag
cgagaaaaacccgcacgagggggtcacccggtcccgtggagggaggagaggagccgggct
gacccgtcccgagagggcaggggggcggacggcgcggtggggaggaaggagcagagggtc
tgcgataagaggagacgggatgacgagggaagggaggagatcatggaagggcagccgaga
ggggaaggtagtagtagtagtgaagaagaggaggaagaggagtggtcgaatgccgacgac
tggcgagcctattacagatcctgggagcagtactacgaagccatggcttgccatcctcag
cccggttaccatagctactacagccaagccaacagctggatggcagcatatcgcatgaat
acagtctacattaacgagctccttaaacactga
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