KEGG   Gadus morhua (Atlantic cod): 115548243
Entry
115548243         CDS       T10832                                 
Symbol
lig1
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
gmh  Gadus morhua (Atlantic cod)
Pathway
gmh03030  DNA replication
gmh03410  Base excision repair
gmh03420  Nucleotide excision repair
gmh03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:gmh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    115548243 (lig1)
   03410 Base excision repair
    115548243 (lig1)
   03420 Nucleotide excision repair
    115548243 (lig1)
   03430 Mismatch repair
    115548243 (lig1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:gmh03032]
    115548243 (lig1)
   03400 DNA repair and recombination proteins [BR:gmh03400]
    115548243 (lig1)
Enzymes [BR:gmh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     115548243 (lig1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     115548243 (lig1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     115548243 (lig1)
DNA replication proteins [BR:gmh03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    115548243 (lig1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     115548243 (lig1)
DNA repair and recombination proteins [BR:gmh03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     115548243 (lig1)
   NER (nucleotide excision repair)
    Other NER factors
     115548243 (lig1)
   MMR (mismatch excision repair)
    Other MMR factors
     115548243 (lig1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 115548243
NCBI-ProteinID: XP_030218571
Ensembl: ENSGMOG00000003715
UniProt: A0A8C5A076
LinkDB
Position
8:3278677..3317328
AA seq 1085 aa
MQRSIASFFQPKGKEKDIKKKREEPVKETVKSPLKAQNGVKETDSPVKKVVKRSRQLMDS
DDDDTPVVKEQAPPKEKALPKEKAPPKDKAPPKEEKEEAFKAVSTPLSPSPAPATPSTPV
TPATPASSGTPGTPTSISPSGIPKRKTARKMFPKRKLNESSSPLGGRDAAAAAAAAAAAA
AAVVVPGAPEEQKERSSEGALSQPSKRPRVESPSSGTGGKGDEAMEVEAAEEEKTEEEEE
EAATETDVPAARDGTGEKGELAAERRKGAEVKKEESEQRQEDEEEEEEEEKKKAKGAKDE
KRAGEEKGPADTRQQKKTKTKKTTTQKKSEEEEEEEEERLAEKDSAKSPRTQAAKERKEA
KEQGGDKDLAKKAAISSFFAPRKAAVKVEKLEKVEETNEGEKGEVADVKKKEPEKAAVDD
VKDKKGDVTPGQKDFDPSRPNYHPIDHACWGRGQKVPYLAVARTFERIEEDSGRLRNIET
LSNLLRSVMLLSPDDLLCCVYLCLNQLGPAYLGIELGVGDTVLMKAVAQATGRQLDKIKA
EAQEKGDLGLVAESSRSNQRTMFQPANLTAVGVFAKLKEIASMSGNSAMNKKIDIIKGLF
VACRFSEARYIVRSLGGKLRIGLAEQSVLAALNQAVCLTPPGQDFPPAVLDAGKGMSTES
RRTWLEEKSLILKQTYCEMPNYDVILPVLLKEGIDELPKHCKLTPGVPLRPMLAHPTKGV
GEVMKRFDEAAFTCEYKYDGERAQIHILENGEVRVFSRNQEDNTSKYPDIIARIPKMKKD
SVVSCVLDSEAVAWDREKKQIQPFQVLTTRKRKDVDASEIKVQVCIYAFDLLYLNGESLV
RQPLSRRRALLKESFSETEGEFVFARYIDSDNTEAIGEFLEQSVKDSCEGLMVKTLEKDA
TYEIAKRSHNWLKLKKDYLDGVGDTMDLCVIGAYMGKGKRAGAYGGFLLACYDDEGEEFQ
SVCKIGTGFKDEDLEQHYKFLKEHILPKPRAYYRVDQSTEPDVWLDAVQVWEVKCADLSL
SPIYKAGMGLADPEKGISLRFPRFLRIRDDKKPEDATNSLQIADLYKKQQQIQNQGEKAD
LEDYY
NT seq 3258 nt   +upstreamnt  +downstreamnt
atgcagcgaagcatcgcttccttcttccaacccaagggcaaggagaaggatattaagaag
aagcgtgaagaacctgttaaagagacggtcaaaagccctctcaaggcacagaatggggtc
aaggaaaccgattccccggtcaagaaggttgtcaagcgcagccgtcaactcatggacagt
gatgacgatgacacgcccgtagtgaaagagcaggcaccacccaaggagaaggccctgccc
aaggagaaagccccgcccaaagacaaagccccacccaaagaggagaaggaggaggctttc
aaggcagtgtccaccccgctctctccatctccggcccccgccacgccctccactcccgtc
accccggcaacccccgcctcctcgggtaccccgggtacccccacctccatctccccctct
gggatccccaagcgcaaaaccgcgaggaagatgttcccgaagcggaagctgaacgagagc
agcagccctctggggggccgcgacgcggcggcggcggcggcggcggcggcggcggcggcg
gcggcggtggtggtaccgggagccccggaggagcagaaggagcgcagcagcgagggggcc
ctcagccagcccagcaagaggccccgggtggagagcccctcctcgggcaccggcggaaaa
ggtgatgaggcgatggaggtagaggccgccgaggaagaaaagacggaggaggaggaggag
gaggcagcgactgagacggatgtgccagcagcgcgggacggcacgggagaaaagggtgag
ctggcggctgaaaggaggaaaggagcggaggtgaagaaggaggagagcgagcagcgacag
gaggatgaagaggaggaggaggaggaggagaagaaaaaggcaaagggagcgaaggatgaa
aagagggccggagaggagaaagggcccgccgacaccaggcagcagaagaagacgaagact
aagaagacgacaacgcagaagaagagcgaggaagaggaggaggaggaggaagagcgactg
gctgaaaaggacagcgccaagagcccacggactcaagccgccaaggagcgtaaggaggcg
aaagaacagggaggagataaggacttggccaagaaagccgccatcagcagtttctttgca
cccaggaaagcggcggtcaaggtggagaagctggagaaggtggaggagacgaatgaggga
gaaaagggggaggtggcggatgtgaagaagaaagagccagagaaggccgcagtggacgat
gtcaaagataagaaaggtgacgtgactccagggcagaaagactttgacccgtccaggccc
aactaccacccgatagaccacgcctgctgggggcggggccagaaggtgccgtacttggcg
gtggcgcggacgttcgagaggatcgaagaggactccggccggctgaggaacattgagacg
ctgtccaacctgctgcggtccgtgatgctcctctccccagatgacctgctgtgctgcgtg
tacctgtgcctgaatcagcttggccccgcctacctgggcattgagctaggagtgggcgac
acggtcctgatgaaagccgttgcccaggcaaccgggcgacagttggacaagatcaaggcg
gaggcgcaggagaagggcgacctcggccttgtggcggagagttcccgtagcaaccagcgc
accatgttccagcccgccaatctcacggcggtgggggtgttcgccaagctgaaggagatc
gccagcatgagcgggaactcggccatgaataagaaaatcgacatcatcaaaggcctcttt
gtggcgtgccgcttctcagaagcccgctacatagtcaggtccctgggggggaagctgcgg
atcgggctggcggagcagagtgtcctggccgccctcaaccaggccgtgtgcctgacaccc
cccggccaagatttcccgcccgctgtactcgacgccggcaagggaatgagcacagagagt
cgcaggacatggctggaggagaagagtctcatcctgaagcagacctactgcgagatgccc
aattatgatgtcattctgccagtgctgctcaaggagggaatcgacgagctgccaaaacac
tgcaagcttaccccaggtgtacccctgaggcccatgctggcccaccccaccaagggggtc
ggagaggtcatgaagaggttcgatgaggcggcattcacctgcgagtacaaatacgacggc
gagcgtgctcagatccatattctagagaacggagaggtgcgggtattcagccgtaaccag
gaggacaacaccagcaagtaccccgacatcatcgcacgcatccccaagatgaagaaggac
tctgtggtgtcgtgcgtgctggactctgaggccgtggcctgggaccgggagaagaagcag
attcagcccttccaggtcctcaccactcgcaagagaaaggacgtcgatgcctccgagatc
aaggtccaggtttgcatctacgccttcgacctgctgtacctcaacggcgagtccctggtg
cgccagccgctgtcccggcgccgggccctgctgaaggagagcttctcggagacggagggg
gagtttgtgttcgcccgctacatcgactcggacaacacggaggccatcggagagttcctg
gagcagtctgtaaaagattcctgcgaggggttgatggtgaagacgctagaaaaggatgcc
acttatgaaatcgccaagcgctctcacaactggctcaagctgaagaaggactacctggac
ggggtgggtgacaccatggacctctgcgtgatcggagcctacatgggcaagggcaagcga
gcgggcgcctacggggggttcctgctggcctgctacgacgacgagggggaggagttccag
tccgtctgcaagattgggacgggcttcaaggatgaagatctagagcagcattacaagttc
ttgaaggaacacattctgcccaagccccgggcctactaccgcgtcgaccaatcaacagag
cccgacgtatggctggacgccgtccaggtgtgggaggtcaagtgcgccgacctatccctg
tcccccatctacaaggccggaatgggattggcggacccagagaagggcatttccctgcgc
ttcccccggttcctgcggatcagagacgacaagaagcccgaagacgccaccaacagcttg
cagattgccgatctgtacaagaagcagcagcagattcagaaccagggagaaaaggctgac
ctagaagactactactga

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