Gadus morhua (Atlantic cod): 115548257
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Entry
115548257 CDS
T10832
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1 isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
115548257 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gmh01009
]
115548257 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gmh04131
]
115548257 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
gmh03029
]
115548257 (rb1cc1)
Protein phosphatases and associated proteins [BR:
gmh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
115548257 (rb1cc1)
Membrane trafficking [BR:
gmh04131
]
Autophagy
Autophagosome formation proteins
ULK complex
115548257 (rb1cc1)
Mitochondrial biogenesis [BR:
gmh03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
115548257 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
TMF_DNA_bd
TBK1_ULD
ubiquitin
Motif
Other DBs
NCBI-GeneID:
115548257
NCBI-ProteinID:
XP_030218596
Ensembl:
ENSGMOG00000002866
LinkDB
All DBs
Position
8:complement(5612959..5629580)
Genome browser
AA seq
1643 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTELAVQTVLDLKHAIQVKYKIATQHQVLVVNGGECMAAERRVC
SYSAGTDTNPIFLFNKEMILCDRAPTIPKTTFSIENEMELKVEESLMMPAVFHTVASRTQ
LAVEMFEVAKKLCSFCERLVHDEHLQHQGWAAIMANLDDCTLSYQKLLWKYESAYTNYQQ
DFEEIKYKLTKLGTAVSVMAKIPLLECLTRHSYREIVEKSTSTPDKDSDETEGEKSTDSI
LRGPQRPTKLPASFSAPAATASGSPSDQGTNEMTDSGGLRAALQEEEDDSPEMALPPNFN
VTLLDWINVQDRPNDVESVVRKCLDSINRLDPRIIQPFLADCKDTIAKLDNQNMKAIKGL
EDRLYALDQMIASCKKLVNEQKELAQGFLANQKRAENLKDTSVLPDLCLSHANQLMIMLT
NHRKLLDIKQKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALFRLLVELLERVRV
VEALSTVPQMYCLAVVEVVRRKMFIRHYREWACALVKDGKQLYEAEKFKRETFGKLFRRS
FLRNRLFRGLDSWPPTSFCTRKPRRFDYELPDISLEDLHYLKSCCPTEVQPFLMVPTLCD
FEPLNRHVAVLHQLVQAAQSMDEMSRTITDLLNEQRASCSQSGQRSAAMTPQSDGTPGST
TPTSSSKTPSLNLKSPSVPGQPPPPAAPAPAEDLSPDSIDAQTFDFETIGHPNMDLVLQQ
GSLDLDSLAESPESDFMSAVNEFVMEGAALCSPAALSDPTSPEMMVESLYSSVINAIDNK
RILDCTTLEMENTRAAVLERAAERYRVAAEESQGDLRSVKDDLRHLRGLVLKEQRDFGLG
LRAMCLEVRGAVDGMRPAQEQEAGERHRRELLLLRQELEARVQALTRENEGHEAGVKEVQ
RAMLELEALLDHKQAELARLEGEGERRARAEADHAERARALEQTVREQAEEIQGLAAARG
SLEGQLESLRSATERGQRELREELEGAERSHLKEREDEMRREHEAQLQLLSGRHREAQEQ
LSEAHRGELSEAAATLAAALAEKDGRIGELEDRASELADLRCKLEVELALKESEAEEVTR
SLEEARAQQAEVAELRVAAAATGGLRAELAALGQELWRRGEEHEVGLSELRALMRREKDH
CISELVERHEVESGGLRGEVAALQRRAAEAEGADTERQEREKELGQRVAALQQEKEEQLR
RSHEQEAELRSASADMQAENDLLSQKLHEEAEGQRQAEARRGSEREEEASKVQELGAQKK
ELEARLLDRIQKLETELHESKSSNRGEEGQALLAEGGGGAPASASPLSLDSALQERLQQE
RASLQSQMELLERRKDQEMQNLKTSLIAEQQTNFNTVLTREKMKKEQVIKELTESLRKVS
QQQETDKALIEMLSEDRASVMQEKKHLEEELNRMRSSALISSTFMTSQHHPPPAHHLAPQ
EPCEGGATAAGYGAPEFPGDPDRLASVMPVGEEEHDRVESAVEASMVAMQEKYLFSLPSD
TILMTEEKQRIILLERTLHMKEEENKRLSQRLMSQSMSSVSSRHSEKIAIRDFQVGDLVL
IILDERHDNYVLFTVGPTLYFLHSESLSALDLKPASGTSRRPWVLGKVMEKEYCQAKKAQ
NRFKVPLGTKFYRVKAVPWNRKV
NT seq
4932 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgtatgtgttccaggttaacaatggcagcacactgacatttgacacagagctt
gctgtgcaaactgtgctggacctcaaacatgccatccaggtcaaatataagattgcaaca
cagcatcaagtgctggttgtcaatggaggggagtgcatggctgcagagcgccgtgtctgc
agttacagcgctggaacagacacaaaccccatattcctgttcaacaaagagatgatcttg
tgcgaccgggccccgacgatccccaagaccaccttctccatcgagaatgagatggagctc
aaggtggaggagtctctcatgatgccggccgtctttcacaccgtggcctcgcgaacacaa
ctcgcagtggaaatgtttgaggtggccaagaagctctgttctttctgtgagcggctggtt
cacgacgagcatctccagcaccaaggttgggcggccatcatggccaacctggacgactgc
accctctcctatcaaaaactgctctggaaatacgaaagcgcctacaccaattatcaacag
gactttgaggaaatcaaatacaaactcacaaagctcggtactgcggtctccgtcatggca
aagatacctttgctggaatgtctgaccagacacagttacagggagatcgtcgagaagtcc
acctccaccccggacaaggactccgacgagacggagggggagaagtccaccgactccatc
ctccgcggccctcagagacccaccaagttacccgcgtccttctcagcccccgcggcaacc
gcatccgggtctcctagcgaccagggaaccaacgaaatgactgacagcggcgggctccga
gcggctctgcaggaagaggaggacgacagcccggagatggcacttcctcccaactttaat
gtaacactactggactggatcaatgtacaagacaggcccaacgacgtggagtccgtcgtg
aggaagtgtttggattccatcaaccggcttgacccgcggatcatccagcccttcttggca
gattgcaaagacaccattgccaaattggataatcaaaacatgaaagccatcaaagggctt
gaagaccggttgtacgcgctagaccaaatgattgcgagctgcaagaagctggtcaatgaa
cagaaagaacttgctcagggattcctggccaaccagaagcgtgcggagaacctgaaggat
acatctgttctgccagacttgtgtctgagtcacgccaaccagctgatgatcatgttgacc
aaccacaggaagctgctggacatcaaacaaaaatgcaccactgccaaacaagaactagcg
aacaatctccaagtccgactcaaatggtgctgctacgtgatgctccacgccgaccaggac
ggcgagaagctgcaggccctgttccggctgctggtggagctgttggagcgagtcagggtg
gtggaggccctcagcaccgtgccccagatgtactgtctggccgtggtggaggtggtgcgc
aggaagatgttcatacgccactaccgagagtgggcttgtgctcttgtcaaagacgggaag
cagctttacgaggcagagaagttcaaaagagaaacgtttgggaagctgtttaggaggtcg
tttctcagaaatcgtctgttcagaggactagattcctggcctccgacatcgttttgtaca
cgaaagcccagaaggtttgactacgagcttcctgacatctccctggaagatctgcactac
ctgaagtcctgctgtcccaccgaggtgcaacccttcctcatggttcccacactgtgtgac
ttcgagcctctgaaccgtcacgtggccgtgctacaccaactggtccaggctgcccagagc
atggacgagatgtcgcgcaccatcaccgacctgctgaacgaacagagggcctcctgcagc
cagagcggccagcggtccgctgccatgaccccgcagtccgatggcactcccggctccacc
acccccacctcctcttccaagacgccctccctcaacctcaagagcccctccgtcccgggc
cagcccccccctccggcggccccggcgccggcggaggacctgtccccggacagcatcgac
gcccagaccttcgacttcgagaccatcggccaccccaacatggacctggtcctgcagcag
ggctccctggacctggactccctggccgagagccccgagtcggacttcatgtcggccgtc
aacgagtttgtgatggagggcgccgccctgtgctcgcccgccgccctcagcgaccccacc
agccccgagatgatggtggagtccctctactcgtcggtcatcaacgccatcgacaacaag
cgcatcctggactgcaccacgctggagatggagaacacccgggcggcggtgctggagcgg
gcggcggagcggtaccgcgtcgcggcggaggagtcccagggcgacctgcgcagcgtcaag
gacgacctgcgccacctccgcggcctggtgctgaaggagcagcgcgacttcggcctcggc
ctccgggccatgtgcctcgaggtgcgcggcgccgtcgacggcatgcggccggcccaggag
caggaggccggcgagcgccaccggcgggagctgctcctcctgcggcaggagctggaggcg
cgcgtccaggcgctgacccgggagaacgagggccacgaggccggcgtgaaggaggtgcag
agggccatgctggagctggaggcgctgctggaccacaagcaggcggagctggcccggctg
gagggcgagggggagcggcgggcgcgggcagaggcggaccacgcggagcgggcgcgagcc
ctggagcagacggtccgggagcaggcggaggagatccagggcctcgccgccgcccggggc
tcgctggaggggcagctggagagcctgcgctcggcgacggagcggggccagcgggagctc
cgcgaggagctggagggggcggaacgctcgcacctcaaggagcgggaggacgagatgagg
cgggagcacgaggcccagctgcagctgctctccgggcggcaccgggaggcgcaggagcag
ctgagcgaggcgcaccgcggcgagctgagcgaggcggccgccacgctggccgccgccctg
gccgagaaggacgggcggatcggcgagctggaggaccgcgcctccgagctggccgacctg
cgctgcaagctggaggtggagctcgccctcaaggagtcggaggcggaggaggtgacgcgg
tcgctggaggaggcgcgggcgcagcaggcggaggtggcggagctccgggtggcggcggcg
gcgacgggcggcctgcgtgccgagctggcggcgctcggacaggagctgtggcggcgcggc
gaggagcacgaggtgggcctctcggagctccgggccctgatgcggcgggagaaggaccac
tgcatctcggagctggtggagcgccacgaggtggagagcggcggcctgcgcggcgaggtc
gccgccctgcagcggcgggcggccgaggcggagggggccgacaccgagcggcaggagagg
gagaaggagctgggccagagggtcgccgccctgcagcaggagaaggaggagcagctacgg
cggtcccatgagcaggaggcggagctcaggagcgccagcgcagacatgcaggcggagaac
gacctgctgtcccagaagctgcacgaggaggcggaggggcagcggcaggcggaggcccgg
cggggcagcgagagggaggaggaggcctccaaggttcaggaactgggggcgcagaagaag
gagctggaggcgaggctgttggacagaattcagaaacttgagactgaacttcacgagagc
aagtcgtcgaacaggggggaggagggccaggccctgctggcggagggtggcggtggcgcc
ccggcctcagcctccccgctgtccctggactcggcgctgcaggagaggctgcagcaggag
cgcgcctccctgcagagccagatggagctgctggagaggaggaaggaccaggagatgcag
aacctcaagacgtcactcatcgccgagcagcagactaacttcaacacggtgctgacccgg
gagaagatgaagaaggagcaggtcatcaaggagctcacggagagcctgagaaaggtcagc
cagcagcaggagacggacaaagccctgatcgagatgctgtcggaggaccgcgccagcgtc
atgcaggagaagaagcacctggaggaggagctgaaccgcatgcgtagctccgccctcatc
tcctccaccttcatgacctcgcagcatcacccgccgcccgcccaccacctggccccccag
gagccctgcgagggcggggccacggcggccgggtacggggcccccgagttcccgggcgac
cccgaccgcctggcctcggtgatgccggtgggggaggaggagcatgaccgcgtggaatcg
gccgtggaggccagcatggtggccatgcaagagaaatatttgttttctctccctagtgac
accattctgatgactgaggagaagcagaggataatccttcttgaaaggacgttgcacatg
aaggaagaagaaaacaagcgcctcagtcagcgactgatgtcccagagcatgtcatccgtc
tcctctcgtcactcggagaagatcgccatcagagacttccaggtgggcgacctggtgctc
atcatcctggacgagaggcacgacaactacgtgctgttcaccgtgggccccaccctctac
ttcctccactcggagtccctctccgcgctggacctaaagccagcgtcgggcacgtccaga
aggccatgggtgctcgggaaggtgatggagaaggaatattgtcaagctaaaaaggcccag
aaccgcttcaaagtccccctgggaaccaagttctaccgggtaaaggcggtgccgtggaac
cggaaggtctga
DBGET
integrated database retrieval system
