Gadus morhua (Atlantic cod): 115548635
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Entry
115548635 CDS
T10832
Symbol
rc3h1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
gmh Gadus morhua (Atlantic cod)
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gmh03000
]
115548635 (rc3h1)
04121 Ubiquitin system [BR:
gmh04121
]
115548635 (rc3h1)
Transcription factors [BR:
gmh03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
115548635 (rc3h1)
Ubiquitin system [BR:
gmh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
115548635 (rc3h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
Prok-RING_4
zf_CCCH_4
FYVE
NS3_helicase_C
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
115548635
NCBI-ProteinID:
XP_030219258
Ensembl:
ENSGMOG00000005886
LinkDB
All DBs
Position
8:complement(8923615..8942466)
Genome browser
AA seq
1145 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAISTD
IEQLPVNTALLQLVGGQVPKAQPVALITSPEDSQHYEEARQCVEELALYLKPLSNTRGVG
LSSTAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPGSGGLMADDGLPMDVAVTRKPS
PLPNGSALGPSMPQLVARGTEAYDLLRKPLKMDGGSAPGSPPDPHDGMGKPGMSLPPHPM
AHGRLPADHLSGVKQMPVVPRGSPMYPPQQQQQQMAEMYYPDTRPPPSSSQYESSQYPTG
YPYQQPPPQYVHRNYIRNAPPPPDSAGAPYQDPYPGYGPPERPYQAPHSGPPFSYPPPHY
DNRGRHGSYQAPPPPPQPYPSQRDDMVRMSPAPMDGPPPSGGPGGSLYHQEPGPRERYPS
EGYYPPANPPPPMRAYPRDPSYGRSQPSLDYLHRRRQELLSQLEERKVISPPPFAASPTL
SHPFPSDYPPEYGDDGSKAFGKADYAAQYSPWSCDTITSYIGTKDAKPKDVMAPGAMEMM
QNVEAKGLRDPSLEAPRRGGEVKDDDPIIPFGPQPTVSRFGAISRTTKTGYQTACPVQAM
AAAAQNPNSKHLAMAAEYSYGNHGGWSAGSYPSHQAGSSTSSSSQGHFSERLPMAAPDRE
QMELQMELQQVNQQISQQTQMHNMEAASNSMLLQREASAQAGHPGQPGQSQGSQQHQQQQ
QGKWPAGGNGNTTVSSKQLSLELDHVEREIGKRTREMAMDSQVAHEVQQYKMKAAENGQP
DHKTQLEEISMALGEVSNGSSSLQENAVGGSMISLTNKTSSLSMCSDQGAGPSEMQKNGV
VHSCS
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgccagttcaagccccacaatggacggagttcctgctgtgcccgatctgcacgcagact
tttgaagagacggttcgccggcctattagtttgggctgtggacatactgtctgcaagatg
tgcctgaataaactgcaccggaaggcctgtccatttgaccagacagccatcagcacagac
atcgagcagctacctgttaacacagcactgcttcagctggtgggaggacaggttcctaag
gcccagccagtcgccttgatcaccagtccggaggactctcagcactatgaggaggccaga
caatgtgtggaggagctggccctctaccttaagcccctcagcaacaccagaggggtgggt
ctgagcagcaccgcccagagcatgctgagcaggccgatgcagaggaagctggtcaccctg
gtgcactgtcagctggtggaggaggagggccgcgtcagggccatgcgagcggcccgctcc
ttgggggagcgcaccgtcaccgagctcatcctgcagcaccagaacccccagcagctctcc
tccaacctgtgggctgccgtccgcgccagaggctgccagttcctgggcccagccatgcag
gaggaggctctcaagctggttctgctcgctctggaggacggctcggctctgtccaggaag
gtgctggtcctgtttgtggtccagaggctggagccccgcttcccccaggcgtccaagacc
agcatcggccatgtggttcagctcctctaccgggcctcctgcttcaaggtgaccaagcgc
gacgaggactcgtccctcatgcagctgaaggaggagtttcgtacgtacgaggccctgcga
cgcgagcatgactcccagattgtgcagatcgccatggaagggggtttgcgcatcgccccc
gaccaatggtcctcgctgctctacggagaccagtcccacaagtcccacatgcagtccatc
atcgataagttgcagaccccggcctccttcgcccagagtgtccaggagctgaccattgcg
ctccaaaggacaggagacccagccaacctgaacaggctgaggccccatctggaactactg
gctaatattgaccccagccctgacgcccctcctccaacgtgggagcagctggagaagggt
ctggtggcggtgaagacggtggtgcacggcctggtggacttcatccagaaccacagcaag
aaaggagcggacccacagcagcctccccagcacagtaagtacaagacgtacatgtgtcgc
gacatgaagcagaaggggggctgtccccgcggagcgagctgcaccttcgcccactctcag
gaagagctcgagaagtaccgcaagatgaacaagcgccttgcggctcgtctacccggctcg
ggggggctgatggcggacgacggtctccccatggacgtggcggtcacgcggaagccgtcc
cccctccccaacggcagcgccctggggccctccatgccccagctggtggcccgcggcacc
gaggcctacgacctgctgcgcaagcccctcaagatggacgggggtagtgcccccggctcg
ccgcccgacccgcatgacggcatggggaagcccggcatgtctcttccacctcaccccatg
gcccacggcaggctcccggcggaccacctgtccggggtgaagcagatgcccgtggttccc
cggggctcgcccatgtacccccctcagcagcagcagcagcagatggccgagatgtactac
ccggacacgcgcccgccgccctcctcctcgcagtacgagtcctcgcagtaccccacaggt
tacccgtaccagcagccccctccccagtacgtccaccggaactacatccgcaacgccccg
ccgcccccggactcggcgggggccccctaccaggacccctaccccggctacggcccgccg
gagcgcccctaccaagccccgcactccggcccccccttctcctatcccccgcctcactac
gacaaccgcggccgccacggctcctaccaggcgcccccgcctcccccccagccctacccc
tcccagagggacgacatggtccggatgagcccggcgccgatggacgggccgccgccgtcg
ggggggccgggcggctcgctctaccaccaggagcccggcccccgggaacgctacccctcc
gaggggtactaccccccggccaacccgcctccacccatgagggcgtatcccagggacccg
tcgtacggccgctcccagcccagcctggactacctgcaccgccgccgccaggagctgctc
tcccagctggaggagaggaaggtcatctcccccccgcccttcgctgcctcccccaccctc
tcccaccccttccccagcgactacccgccggagtacggcgatgatggctccaaagcgttc
ggcaaggcggactacgcggcccagtactccccctggtcatgtgacaccatcacctcgtac
atcggcaccaaggacgccaagcccaaagacgtcatggcccccggcgccatggagatgatg
cagaatgtggaggccaagggtctccgggacccctcgttggaggccccgcgtcggggcggc
gaggtgaaggacgacgaccccatcatccccttcggcccccagcccaccgtgtcgcgcttc
ggcgccatctcccgcaccaccaagacgggctaccagacggcctgccccgtgcaggccatg
gccgctgccgcccagaaccccaactccaaacacctagccatggctgccgagtactcctat
gggaaccacggaggctggagcgccggctcctacccctcgcaccaggccggctcctccacc
tcgtcctcctctcagggacacttcagtgaacgcctgcccatggcggccccagaccgagag
cagatggagctgcagatggagctgcagcaggtcaaccagcagatcagtcagcagacgcag
atgcacaacatggaggctgccagtaactccatgttgctgcagagggaagccagtgctcag
gctggccacccggggcagcccggccagagccaggggtcccagcagcaccagcagcagcag
cagggcaagtggccagcaggtggcaacggcaacaccaccgtctccagcaagcagctcagc
ctggagctggaccacgtggagagggagatcgggaagaggacccgggagatggccatggac
agccaggtggcccacgaggtgcagcagtacaagatgaaggcggcggagaacggccagccc
gaccacaagacccagctggaggagatctccatggcgctcggtgaggtgtccaacggttcg
agcagtctgcaggaaaatgcggtgggcggttccatgatctcgctgaccaataagacgtct
tcgctgagcatgtgctccgaccagggagccggtccatcagagatgcagaagaatggtgtt
gtccattcctgctcctaa
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