Gadus morhua (Atlantic cod): 115548775
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Entry
115548775 CDS
T10832
Name
(RefSeq) partitioning defective 3 homolog isoform X1
KO
K04237
partitioning defective protein 3
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh04144
Endocytosis
gmh04517
IgSF CAM signaling
gmh04520
Adherens junction
gmh04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
115548775
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
115548775
09144 Cellular community - eukaryotes
04520 Adherens junction
115548775
04530 Tight junction
115548775
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gmh01009
]
115548775
Protein phosphatases and associated proteins [BR:
gmh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
115548775
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Par3_HAL_N_term
PDZ
PDZ_6
Motif
Other DBs
NCBI-GeneID:
115548775
NCBI-ProteinID:
XP_030219467
Ensembl:
ENSGMOG00000034687
LinkDB
All DBs
Position
8:11872827..11996700
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AA seq
1489 aa
AA seq
DB search
MKVTVCFGRTRVVVPCGDGNIKVHTLIQQAVMRYKKAIAKDAGYWLQVHRLEHGGDGGIL
DLDDVLCDVADDKDRLVAVYEEQDPHSGGDGTSASSTGTQSPDLFAPAPPELNGTASSTA
SSSAFTPYQAASEIEVTPSALRTNMPLHVRRSSDPALMTLNGPLNGVEPRPPAEQQTPPS
RRNPSRWSTTAGFMKPRHSTGTSSLERKGKATDTYRSLPRDAGTYTNQRDFQRETARSSL
SANHPMVDRWLERQDQDEESTEENGRIEPVGSADSFLDHAPVRNIEGMVRLVEVTNDGGP
LGIHVVPFSSRDRRTLGLLVKRLERGGKADQQELFEENDCIVCINNTDLRNTRFEQAQNM
FRQAMRSPLIVFHVVPSALKSRYEAMSLGDGRTPSGSSYGSDRFSPDSLGGSSASDHGPP
PRVGVARHASQTHAHSPLLDHPGAERPGPYPPGGGSATLPHPAAKPPTGHAPSPQRGQGS
APALGGFTKKVGRRLNILLKKGPEGLGFSITSRDVPIGGSAPIYVKNILARGAAIQDGRL
KAGDRLMEVSGVDLHGRSQEEVVSLLRNTPMGGAVKLLVLRQEDSFLPRDANASPLTQST
RDLKLEEEELVLTPDGTREFLTFEIPLSDSGSAGLGVSVKGNRSKDNHADLGIFVKSIIN
GGAACKDGRLRVNDQLIAVNAESLLGKTNQDAMETLRKSMSTEGNKRGMIQLIIARRVPK
HGELDPPGSPHASQQAFSSSLDDHERRISHSLYGGLEGLDDNLLPRPGGALPRTAGNYQL
SPTVNMPQDDTVIIEDDRPPLFPPHLSDQSSSSSHDDMCFPAETTPPWAKEPANQNESPL
SPGEEDGSFQREGFGRQSMSEKRTKQFGDAAQLDIIKTRKSKSMDLVADEINLTPRPDPN
AGSSPRDVGPSLGLKKSSSLESLQTAVAEVTLNGGDHPFHRPRPRIIRGRGCNESFRAAI
DKSYDRPTAAANAAAITTEEEDEGMDTLEEDTEGSSRSGRDSVSTVADLTPLTGLANGSA
SSDRPREEKRKDKTPTKEKKRSEGGKEKDKEKGKAKKGMLKGLGEMFRFGKNRKDERVGD
KLERKGSAKWRTEESQASEEETQRMKLEQERIQQKKRELRERQARERDYAEILDVCRPLG
GNHGNQEEAEEHPYAGIPSPPASDPPLGSPRLPYPRLLPPHPQHQHHHQLSDSTLYTPVS
KAPNGRPPSADSNRLAPSNHDRIQRLRHEFQQAQTGPEDPDDRRRTYSFEQPWVSTGSPG
PASPVLGGQGGHGGPGSYSQPGRHSVSVEVQMQRQRQEEREAFALAQRQYSSLPRQPRKP
PVSVTQADYPPPPAVSVEVTKDGPRYSSYQVARGNAGGGGVNARVLLEAQELLRQEQRRR
EQEAKGKLALEANANGGVVSGGGGYEQQQGKRTLERNANSHASANGNGSPVSVSVSVSSY
EQRYSPAPLLHLRDPASPKGPTRQDVPPSPSQLARLNRLGSDRGRPFYS
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtgacggtgtgtttcggccggacccgggtggtcgtgccgtgcggggatgggaac
attaaggtccacacgctgatccagcaggcggtcatgaggtacaagaaggcgatcgccaag
gacgcgggctactggctgcaggtccaccggttggagcacgggggtgacggaggaatcttg
gacctggacgatgtgctgtgtgacgtagcagacgacaaggaccggttggtggcggtctac
gaggagcaggacccccactccgggggggacgggaccagtgccagctccacggggacccag
agcccggacctcttcgcccctgcgccccccgagctgaacggcaccgcctcctccactgcc
tcctcctccgccttcacgccctaccaggccgccagcgagatcgaggtcacgccctccgcc
ctcaggaccaacatgccactccacgtgcgtcgcagtagcgacccggccctgatgacgctg
aacgggcctctgaatggcgtggagcctcgcccccccgcggagcagcagaccccgccctcc
cgacgtaacccctcccgctggtcgaccactgccggcttcatgaagccccgccactcaacc
ggcaccagcagcctggagcgcaaggggaaggctacggacacgtaccgcagcctaccgcgc
gacgccgggacctataccaatcagagggacttccagagagagacggcgaggtcatcgctc
agcgccaaccaccccatggtggaccgctggctggagaggcaggaccaggacgaggagtcc
acggaggagaacggccggatcgagccggtcgggagcgcagactccttcctggaccatgcc
cccgtacggaacatcgaaggcatggtgcggctggtggaggtgaccaacgatggcggcccc
ctggggatccacgtggtgcccttcagctccagggaccgcaggaccctgggcctgctggtg
aagcgcctggagcgggggggcaaggcggaccagcaggagctgttcgaggagaacgactgc
atcgtgtgcatcaacaacacggacttgcgcaacacgcgcttcgaacaggcccagaacatg
ttccgtcaggccatgcggtcgcccctcatcgtgttccacgtggttccgtctgcgctgaag
tcgcggtacgaggcgatgtccctgggggacggccgcacgccgtcgggctcctcgtacggc
tcggaccgcttcagccccgactcgctgggcgggagctccgcctccgaccacggcccgccc
ccgcgcgtgggcgtcgcccgccacgcctcacagacgcacgcccactcgccgctcctggac
caccccggggcggagcggccggggccctacccccccgggggtgggtccgccaccctgccc
caccccgccgccaagccccccacaggccacgccccctcgccacagcgcgggcaaggctcc
gcccctgccctcggcggcttcaccaagaaggtggggaggaggctgaacatcctgctgaag
aaaggtccggagggtctgggcttcagcatcacatcgcgggacgtcccgatcgggggctcg
gcgcccatctacgtcaagaacatcctggcccggggggccgccatccaagatggccgcctg
aaggcgggggaccggctgatggaggtgagcggcgtggacttgcatgggcggagccaggag
gaggtggtgtcgctgctccggaacacgcccatgggcggagctgtgaagctgctggtgctg
agacaggaggacagcttcctgccacgagacgcgaacgccagccccctgacgcagagcacc
cgagacttgaagctggaggaggaggagctggtcctgaccccggacgggacccgggagttc
ctgaccttcgagatcccgctgagcgactcgggttctgccgggctgggggtcagcgtgaag
gggaaccgctccaaggacaaccacgccgacctcggcatcttcgtcaagtccatcatcaac
gggggcgccgcttgcaaggacggccggctgcgggtcaacgaccagctgatcgcggtgaac
gccgagtccctacttggcaagaccaaccaggacgccatggagacgctgcgcaagtccatg
tccaccgagggcaacaagaggggcatgatccagctcatcatcgcccggcgcgtccccaag
cacggagagctggacccccccggcagtccgcacgcctcccagcaggccttcagctcctcg
ctggacgaccacgagcgccgcatctcccactcgctgtacgggggcctggagggtctggat
gacaacctgctgccccgccccgggggggccctgccccgcaccgccggtaactaccagctg
tccccaaccgtcaacatgccccaggacgacacggtcatcatcgaggacgaccggcccccc
ttgttccccccccacctctccgaccaatcctcctccagctcccacgacgacatgtgcttc
cccgccgagacgaccccgccctgggccaaggagccagccaatcagaacgagagcccgctg
agcccgggggaagaggatggaagcttccagagggagggcttcggtcggcagagcatgtcg
gagaaacgcaccaagcaattcggagacgcagcccagctggacatcatcaagaccaggaag
tccaagagcatggacctcgtagccgacgagattaacctcacaccacgacccgaccccaac
gcagggtcgtctccccgggacgtgggtccgtctctgggcctgaagaagtccagctccctg
gagagcctccagaccgccgtggccgaggtgaccctgaatggaggggaccaccccttccac
aggccacgcccccgcatcatcagggggcggggctgcaacgagagcttccgcgccgccatc
gataaatcgtatgaccggccgaccgccgccgccaacgctgccgccatcaccaccgaagaa
gaagatgagggcatggacacactggaggaggacacagaggggagctcccggtctgggcgg
gactcggtctccacggtagcagacctcacccccctgaccgggttggccaacgggtccgcc
tcttcggaccggcccagggaggagaagaggaaggacaagacgcccaccaaggagaagaag
aggagcgagggagggaaggagaaggacaaggagaagggcaaggccaagaagggcatgctg
aagggcctgggggagatgttcaggttcgggaagaatcggaaggacgaacgcgtcggcgac
aagctggagcggaaaggctcggccaagtggcggacggaggaatcacaggcgtcggaggag
gagacgcagcgcatgaagctggagcaggagaggatccagcagaagaagcgggagctgcga
gagcgtcaggcgcgggagcgggactacgccgagatcctggacgtatgccggcccctgggc
ggtaaccacggcaaccaggaggaggcagaggagcacccgtacgccggcatcccctccccg
cccgcctctgaccccccgctgggcagcccccgcctcccctacccccgcctcctgcccccc
cacccccagcaccagcaccaccaccagctctcagactccaccctctacacccccgtcagc
aaggcccccaatgggaggcccccgtccgcagacagcaaccgactagcccctagcaaccac
gaccggatacagcggctgcgccatgagttccagcaggcccagacgggacccgaggacccc
gacgaccgccggcgcacctacagcttcgagcagccctgggtcagcactggcagtccgggc
cccgctagtccggtcctggggggccaggggggtcacgggggtccggggtcctacagccag
cccgggcgccactcggtctccgtggaggtccagatgcagaggcagcggcaggaggagagg
gaggccttcgccctggcccagcgccagtacagctccctgccccgccagcccaggaagccc
cctgtctcggtgacccaggcggactatcccccccctcccgccgtcagcgtggaggtcacc
aaggacggcccccgctactccagctaccaggtcgcccgcggcaacgccggagggggcgga
gtcaacgcccgcgtgctcctggaggcccaggagctcctgcggcaggagcagcgtcgccgt
gagcaggaggctaagggcaagctagcgctggaagctaacgctaacggcggcgtggttagc
ggcggcggcggctatgagcagcagcagggcaagcggacgctggagaggaacgctaacagc
cacgctagcgctaacggaaacggtagccctgttagcgttagcgttagcgtcagcagctac
gagcagcgctacagcccggcgcccctcctccaccttagggaccccgcctcacccaagggc
cccacgcggcaggacgtcccgccctcaccctcccagctcgcccgcctcaaccgcctgggc
tccgaccgggggcggccattttactcctga
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